HEADER HYDROLASE 19-JAN-12 4AFM TITLE STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF A NOVEL CARBOHYDRATE TITLE 2 BINDING MODULE OF ENDOGLUCANASE CEL5A FROM EUBACTERIUM TITLE 3 CELLULOSOLVENS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOGLUCANASE CEL5A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CARBOHYDRATE BINDING MODULE, RESIDUES 37-170; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EUBACTERIUM CELLULOSOLVENS; SOURCE 3 ORGANISM_TAXID: 29322; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS HYDROLASE, CARBOHYDRATE BINDING MODULE, FAMILY 5 GLYCOSIDE HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.S.LUIS,I.VENDITTO,J.A.M.PRATES,L.M.A.FERREIRA,H.J.GILBERT, AUTHOR 2 C.M.G.A.FONTES,S.NAJMUDIN REVDAT 5 20-DEC-23 4AFM 1 REMARK LINK REVDAT 4 08-MAY-19 4AFM 1 REMARK LINK REVDAT 3 27-FEB-13 4AFM 1 JRNL REVDAT 2 30-JAN-13 4AFM 1 JRNL REVDAT 1 19-DEC-12 4AFM 0 JRNL AUTH A.S.LUIS,I.VENDITTO,J.A.M.PRATES,L.M.A.FERRIEIRA,M.J.TEMPLE, JRNL AUTH 2 A.ROGOWSKI,A.BASLE,J.XUE,J.P.KNOX,S.NAJMUDIN,C.M.G.A.FONTES, JRNL AUTH 3 H.J.GILBERT JRNL TITL UNDERSTANDING HOW NON-CATALYTIC CARBOHYDRATE BINDING MODULES JRNL TITL 2 CAN DISPLAY SPECIFICITY FOR XYLOGLUCAN. JRNL REF J.BIOL.CHEM. V. 288 4799 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23229556 JRNL DOI 10.1074/JBC.M112.432781 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.S.LUIS,V.D.ALVES,M.J.ROMAO,J.A.M.PRATES,C.M.G.A.FONTES, REMARK 1 AUTH 2 S.NAJMUDIN REMARK 1 TITL OVERPRODUCTION, PURIFICATION, CRYSTALLIZATION AND REMARK 1 TITL 2 PRELIMINARY X-RAY CHARACTERIZATION OF A NOVEL REMARK 1 TITL 3 CARBOHYDRATE-BINDING MODULE OF ENDOGLUCANASE CEL5A FROM REMARK 1 TITL 4 EUBACTERIUM CELLULOSOLVENS. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 67 491 2011 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 21505249 REMARK 1 DOI 10.1107/S1744309111004246 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 33704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1788 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1377 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 54.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1003 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : -0.23000 REMARK 3 B12 (A**2) : 0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.043 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.044 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.023 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.074 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1175 ; 0.031 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 12 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1623 ; 2.873 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 24 ; 0.178 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 163 ; 8.428 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;44.201 ;25.660 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 177 ;13.297 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 1 ;11.100 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 177 ; 0.168 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 926 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 39 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): -1.2267 4.1149 3.9345 REMARK 3 T TENSOR REMARK 3 T11: 0.0576 T22: 0.0034 REMARK 3 T33: 0.0356 T12: 0.0103 REMARK 3 T13: 0.0063 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.5508 L22: 0.8779 REMARK 3 L33: 1.3097 L12: 0.5710 REMARK 3 L13: 0.4903 L23: 1.0079 REMARK 3 S TENSOR REMARK 3 S11: -0.0493 S12: -0.0165 S13: -0.0220 REMARK 3 S21: -0.0133 S22: -0.0004 S23: 0.0144 REMARK 3 S31: 0.0268 S32: 0.0126 S33: 0.0496 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5895 11.3235 11.1250 REMARK 3 T TENSOR REMARK 3 T11: 0.0383 T22: 0.0543 REMARK 3 T33: 0.0268 T12: 0.0163 REMARK 3 T13: 0.0096 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.5130 L22: 1.0665 REMARK 3 L33: 1.2096 L12: -0.2693 REMARK 3 L13: -0.7505 L23: 0.7146 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: -0.1033 S13: 0.0251 REMARK 3 S21: -0.0435 S22: 0.0714 S23: -0.0945 REMARK 3 S31: -0.0094 S32: 0.1556 S33: -0.0666 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 153 REMARK 3 ORIGIN FOR THE GROUP (A): 7.9903 13.5880 -2.3683 REMARK 3 T TENSOR REMARK 3 T11: 0.0540 T22: 0.0217 REMARK 3 T33: 0.0323 T12: -0.0049 REMARK 3 T13: 0.0102 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.3122 L22: 0.1008 REMARK 3 L33: 0.0911 L12: 0.0231 REMARK 3 L13: 0.0300 L23: 0.0452 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: 0.0194 S13: 0.0261 REMARK 3 S21: -0.0170 S22: 0.0392 S23: -0.0017 REMARK 3 S31: -0.0217 S32: -0.0025 S33: -0.0106 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 154 A 165 REMARK 3 ORIGIN FOR THE GROUP (A): -2.4001 8.4998 -0.5192 REMARK 3 T TENSOR REMARK 3 T11: 0.0654 T22: 0.0044 REMARK 3 T33: 0.0335 T12: 0.0106 REMARK 3 T13: 0.0038 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.4439 L22: 0.0874 REMARK 3 L33: 2.0105 L12: 0.1466 REMARK 3 L13: 0.1734 L23: 0.3308 REMARK 3 S TENSOR REMARK 3 S11: -0.0553 S12: 0.0143 S13: -0.0071 REMARK 3 S21: -0.0190 S22: 0.0031 S23: 0.0067 REMARK 3 S31: -0.0620 S32: -0.0171 S33: 0.0522 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U REMARK 3 VALUES.PHENIX-1.7.2-869 WAS USED IN THE PENULTIMATE STEP FOR REMARK 3 OCCUPANCY REFINEMENT AND TLS GROUP DETERMINATION. RESIDUES 37-38 REMARK 3 AND 166-170 ARE DISORDERED. ASP A118 WAS MODELLED WITH ALTERNATE REMARK 3 CONFORMATION. IT MAY ALSO HAVE RADIATION DAMAGE AS IN PDB 4AFD. REMARK 3 DISORDERED SIDE CHAINS WERE MODELED STEREOCHEMICALLY. FOLLOWING REMARK 3 WERE GIVEN ALTERNATE CONFORMATIONS, SER A45, GLU A51, GLN A67, REMARK 3 GLN A71, MSE A73, GLU A82, ILE A83, IL3 A95 GLU A100, SER A103, REMARK 3 SER A112, VAL A116, GLN A126, LYS A130, MSE A154, VAL A160 AND REMARK 3 SER A162. REMARK 4 REMARK 4 4AFM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1290050987. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35557 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 38.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 200 DATA REDUNDANCY : 21.60 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4AEK REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 80 MG/ML OF PROTEIN AT 292 K WERE REMARK 280 GROWN IN 0.2 M AMMONIUM SULFATE, 0.1 M SODIUM ACETATE TRIHYDRATE REMARK 280 PH 4.6, 26% W/V PEG 2K MME. CRYSTALS WERE SOAKED WITH 10 MM REMARK 280 CELLOHEXAOSE FOR A FEW HOURS. 30% GLYCEROL WAS USED AS A REMARK 280 CRYOPROTECTANT. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.57333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 129.14667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 96.86000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 161.43333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.28667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.57333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 129.14667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 161.43333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 96.86000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 32.28667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2001 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 37 REMARK 465 SER A 38 REMARK 465 GLY A 166 REMARK 465 SER A 167 REMARK 465 SER A 168 REMARK 465 ASP A 169 REMARK 465 ASP A 170 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2089 O HOH A 2092 1.99 REMARK 500 O HOH A 2021 O HOH A 2022 2.06 REMARK 500 O HOH A 2019 O HOH A 2020 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2038 O HOH A 2038 8555 2.09 REMARK 500 NE2 GLN A 71 O HOH A 2038 8555 2.09 REMARK 500 NE2 GLN A 71 O1 GOL A 1167 8555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 99 CE2 TRP A 99 CD2 0.098 REMARK 500 HIS A 101 CG HIS A 101 CD2 0.082 REMARK 500 ASP A 118 N ASP A 118 CA 0.169 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 91 CB - CG - OD2 ANGL. DEV. = -7.9 DEGREES REMARK 500 TRP A 99 CD1 - NE1 - CE2 ANGL. DEV. = 6.6 DEGREES REMARK 500 VAL A 117 O - C - N ANGL. DEV. = -9.7 DEGREES REMARK 500 ASP A 118 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 136 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 139 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 141 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 52 98.68 -165.95 REMARK 500 ASP A 118 -122.69 58.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 164 SER A 165 142.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 80 11.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 GLYCEROL (GOL): FROM THE CRYOPROTECTANT. REMARK 600 ACETATE ION (ACT): FROM THE CRYSTALLISATION BUFFER. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1168 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1169 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1170 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1172 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YPJ RELATED DB: PDB REMARK 900 NON-CATALYTIC CARBOHYDRATE BINDING MODULE CBM65B REMARK 900 RELATED ID: 4AEK RELATED DB: PDB REMARK 900 STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF A NOVEL CARBOHYDRATE REMARK 900 BINDING MODULE OF ENDOGLUCANASE CEL5A FROM EUBACTERIUM REMARK 900 CELLULOSOLVENS REMARK 900 RELATED ID: 4AEM RELATED DB: PDB REMARK 900 STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF A NOVEL CARBOHYDRATE REMARK 900 BINDING MODULE OF ENDOGLUCANASE CEL5A FROM EUBACTERIUM REMARK 900 CELLULOSOLVENS REMARK 900 RELATED ID: 4AFD RELATED DB: PDB REMARK 900 STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF A NOVEL CARBOHYDRATE REMARK 900 BINDING MODULE OF ENDOGLUCANASE CEL5A FROM EUBACTERIUM REMARK 900 CELLULOSOLVENS WITH A BOUND CELLOTETRAOSE MOEITY. REMARK 900 RELATED ID: 4BA6 RELATED DB: PDB REMARK 900 HIGH RESOLUTION STRUCTURE OF THE C-TERMINAL FAMILY 65 CARBOHYDRATE REMARK 900 BINDING MODULE (CBM65B) OF ENDOGLUCANASE CEL5A FROM EUBACTERIUM REMARK 900 CELLULOSOLVENS DBREF 4AFM A 37 170 UNP Q3LHN3 Q3LHN3_9FIRM 37 170 SEQRES 1 A 134 ALA SER GLY ASP ILE VAL LEU PHE SER GLY SER LYS HIS SEQRES 2 A 134 VAL GLU PHE THR ASP TRP GLY GLY THR ASP TRP PRO SER SEQRES 3 A 134 ALA TYR GLU LEU GLN PRO PRO TYR GLN THR MSE PRO PHE SEQRES 4 A 134 ASP LEU ASN LYS ASN PHE GLU ILE LYS VAL ASP TYR SER SEQRES 5 A 134 GLY ALA ASP ILE VAL LEU ILE PHE ALA ARG TRP GLU HIS SEQRES 6 A 134 GLY SER LYS PRO GLN ILE TRP ALA GLN ILE SER PRO TYR SEQRES 7 A 134 TYR VAL VAL ASP GLY THR ALA VAL PHE THR LYS GLU GLN SEQRES 8 A 134 ILE ALA LYS ALA TYR GLY SER ASP ASP PHE SER ASP LEU SEQRES 9 A 134 ASP TYR ILE GLY VAL LYS PRO LEU PRO SER ALA ASP GLY SEQRES 10 A 134 MSE THR VAL THR LYS ILE VAL ALA SER TYR THR SER GLY SEQRES 11 A 134 SER SER ASP ASP MODRES 4AFM MSE A 73 MET SELENOMETHIONINE MODRES 4AFM MSE A 154 MET SELENOMETHIONINE HET MSE A 73 13 HET MSE A 154 13 HET GOL A1166 6 HET GOL A1167 6 HET GOL A1168 6 HET ACT A1169 4 HET ACT A1170 4 HET ACT A1171 4 HET ACT A1172 4 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 GOL 3(C3 H8 O3) FORMUL 5 ACT 4(C2 H3 O2 1-) FORMUL 9 HOH *130(H2 O) HELIX 1 1 LYS A 125 GLY A 133 1 9 SHEET 1 AA 5 ASP A 40 VAL A 50 0 SHEET 2 AA 5 MSE A 154 TYR A 163 -1 O MSE A 154 N VAL A 50 SHEET 3 AA 5 PHE A 81 SER A 88 -1 O GLU A 82 N SER A 162 SHEET 4 AA 5 THR A 120 THR A 124 -1 O ALA A 121 N VAL A 85 SHEET 5 AA 5 TYR A 115 VAL A 117 -1 O TYR A 115 N VAL A 122 SHEET 1 AB 4 TYR A 64 LEU A 66 0 SHEET 2 AB 4 TYR A 142 PRO A 147 -1 O ILE A 143 N LEU A 66 SHEET 3 AB 4 ILE A 92 ARG A 98 -1 O VAL A 93 N LYS A 146 SHEET 4 AB 4 ILE A 107 ILE A 111 -1 O ILE A 107 N ARG A 98 LINK C THR A 72 N MSE A 73 1555 1555 1.31 LINK C MSE A 73 N PRO A 74 1555 1555 1.32 LINK C GLY A 153 N MSE A 154 1555 1555 1.33 LINK C MSE A 154 N THR A 155 1555 1555 1.30 SITE 1 AC1 9 LYS A 48 HIS A 49 GLU A 51 MSE A 73 SITE 2 AC1 9 PHE A 75 HOH A2050 HOH A2127 HOH A2128 SITE 3 AC1 9 HOH A2129 SITE 1 AC2 8 TYR A 64 GLU A 65 LEU A 66 GLN A 71 SITE 2 AC2 8 THR A 72 PRO A 74 HOH A2003 HOH A2034 SITE 1 AC3 10 GLY A 89 ALA A 90 ASP A 91 LYS A 104 SITE 2 AC3 10 ASP A 136 SER A 138 HOH A2067 HOH A2068 SITE 3 AC3 10 HOH A2070 HOH A2076 SITE 1 AC4 4 LYS A 84 ASP A 86 THR A 120 VAL A 160 SITE 1 AC5 3 GLN A 67 TYR A 70 HOH A2037 SITE 1 AC6 1 TRP A 99 SITE 1 AC7 1 GLN A 106 CRYST1 48.740 48.740 193.720 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020517 0.011846 0.000000 0.00000 SCALE2 0.000000 0.023691 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005162 0.00000