HEADER SUGAR BINDING PROTEIN 08-NOV-11 4A6S TITLE STRUCTURE OF THE PAIL LECTIN FROM PSEUDOMONAS AERUGINOSA IN COMPLEX TITLE 2 WITH 2-NAPHTYL-1-THIO-BETA-D-GALACTOPYRANOSIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PA-I GALACTOPHILIC LECTIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 2-122; COMPND 5 SYNONYM: PA-IL, GALACTOSE-BINDING LECTIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET25B KEYWDS SUGAR-BINDING PROTEIN, GLYCOMIMETIC, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.RODRIGUE,G.GANNE,B.BLANCHARD,C.SAUCIER,D.GIGUERE,T.S.CHIAO, AUTHOR 2 A.VARROT,A.IMBERTY,R.ROY REVDAT 6 20-DEC-23 4A6S 1 HETSYN REVDAT 5 29-JUL-20 4A6S 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 09-OCT-13 4A6S 1 JRNL REVDAT 3 02-OCT-13 4A6S 1 JRNL REVDAT 2 14-NOV-12 4A6S 1 HETATM ANISOU REVDAT 1 17-OCT-12 4A6S 0 JRNL AUTH J.RODRIGUE,G.GANNE,B.BLANCHARD,C.SAUCIER,D.GIGUERE, JRNL AUTH 2 T.C.SHIAO,A.VARROT,A.IMBERTY,R.ROY JRNL TITL AROMATIC THIOGLYCOSIDE INHIBITORS AGAINST THE VIRULENCE JRNL TITL 2 FACTOR LECA FROM PSEUDOMONAS AERUGINOSA. JRNL REF ORG.BIOMOL.CHEM. V. 11 6906 2013 JRNL REFN ISSN 1477-0520 JRNL PMID 24057051 JRNL DOI 10.1039/C3OB41422A REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 35959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1888 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2325 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 131 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3604 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 234 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.35000 REMARK 3 B22 (A**2) : 2.35000 REMARK 3 B33 (A**2) : -3.52000 REMARK 3 B12 (A**2) : 1.17000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.207 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.076 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3799 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5202 ; 1.657 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 482 ; 6.464 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;34.551 ;25.854 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 520 ;14.554 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;11.275 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 565 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2972 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1969 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2571 ; 0.325 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 193 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 15 ; 0.127 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.226 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.261 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5226 14.8636 50.9895 REMARK 3 T TENSOR REMARK 3 T11: 0.5836 T22: 0.0218 REMARK 3 T33: 0.2547 T12: 0.0597 REMARK 3 T13: -0.0456 T23: -0.0581 REMARK 3 L TENSOR REMARK 3 L11: 2.1705 L22: 1.4252 REMARK 3 L33: 4.5900 L12: 0.2681 REMARK 3 L13: 1.8233 L23: 0.1193 REMARK 3 S TENSOR REMARK 3 S11: 0.2323 S12: 0.1123 S13: -0.1146 REMARK 3 S21: 0.1805 S22: -0.0137 S23: -0.0382 REMARK 3 S31: 0.0772 S32: 0.0688 S33: -0.2186 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 151 REMARK 3 ORIGIN FOR THE GROUP (A): -3.7615 35.0866 51.1015 REMARK 3 T TENSOR REMARK 3 T11: 0.6715 T22: 0.0240 REMARK 3 T33: 0.2917 T12: 0.0833 REMARK 3 T13: 0.1616 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 2.2267 L22: 1.9639 REMARK 3 L33: 4.2351 L12: 0.7678 REMARK 3 L13: 0.9230 L23: 0.9457 REMARK 3 S TENSOR REMARK 3 S11: 0.2812 S12: 0.0534 S13: 0.2851 REMARK 3 S21: 0.1450 S22: -0.0722 S23: 0.0457 REMARK 3 S31: -0.2622 S32: -0.0547 S33: -0.2090 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 151 REMARK 3 ORIGIN FOR THE GROUP (A): -23.8272 25.7961 15.3765 REMARK 3 T TENSOR REMARK 3 T11: 0.3711 T22: 0.4510 REMARK 3 T33: 0.3768 T12: 0.0614 REMARK 3 T13: 0.0735 T23: 0.1794 REMARK 3 L TENSOR REMARK 3 L11: 1.9066 L22: 2.1451 REMARK 3 L33: 4.5429 L12: 0.1953 REMARK 3 L13: 1.7975 L23: 1.1388 REMARK 3 S TENSOR REMARK 3 S11: -0.1847 S12: 0.0682 S13: 0.1121 REMARK 3 S21: 0.0095 S22: 0.2783 S23: 0.4007 REMARK 3 S31: -0.2214 S32: -0.4389 S33: -0.0936 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 151 REMARK 3 ORIGIN FOR THE GROUP (A): -11.1773 7.5976 13.1143 REMARK 3 T TENSOR REMARK 3 T11: 0.3923 T22: 0.3635 REMARK 3 T33: 0.2743 T12: 0.0083 REMARK 3 T13: -0.0480 T23: -0.0294 REMARK 3 L TENSOR REMARK 3 L11: 1.7218 L22: 1.2476 REMARK 3 L33: 4.4766 L12: 0.2279 REMARK 3 L13: 1.5368 L23: 0.9478 REMARK 3 S TENSOR REMARK 3 S11: 0.0361 S12: 0.1979 S13: -0.0955 REMARK 3 S21: 0.0603 S22: 0.3470 S23: -0.0291 REMARK 3 S31: 0.2574 S32: 0.0431 S33: -0.3831 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4A6S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1290049741. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97623 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37963 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1OKO REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M LISO4, 100 MM SODIUM ACETATE PH REMARK 280 4.5, 25% GLYCEROL (ADDED FOR CRYPROTECTION). REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 260.33400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 130.16700 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 130.16700 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 260.33400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2039 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2057 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 58 CG HIS A 58 CD2 0.054 REMARK 500 GLU B 11 CG GLU B 11 CD 0.111 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 38 159.41 -46.59 REMARK 500 ASN A 78 -136.81 59.53 REMARK 500 GLN B 53 58.16 -119.53 REMARK 500 ASN B 78 -130.06 55.04 REMARK 500 ASN B 88 141.92 -25.99 REMARK 500 ASN B 89 9.05 59.71 REMARK 500 GLN C 40 156.44 -48.42 REMARK 500 ASN C 78 -131.50 53.92 REMARK 500 ASN D 78 -137.13 58.40 REMARK 500 ARG D 83 68.59 36.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1122 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GS9 A1123 O3 REMARK 620 2 GS9 A1123 O4 66.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1122 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GS9 B1123 O3 REMARK 620 2 GS9 B1123 O4 65.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C1122 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GS9 C1123 O4 REMARK 620 2 GS9 C1123 O3 60.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D1122 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GS9 D1123 O4 REMARK 620 2 GS9 D1123 O3 65.4 REMARK 620 N 1 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UOJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA LECTIN 1 IN THE CALCIUM- REMARK 900 FREE STATE REMARK 900 RELATED ID: 1L7L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA LECTIN 1DETERMINED BY REMARK 900 SINGLE WAVELENGTH ANOMALOUS SCATTERING PHASING METHOD REMARK 900 RELATED ID: 2VXJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PA-IL LECTIN COMPLEXED WITH AGAL13BGAL14GLC AT REMARK 900 1.9 A RESOLUTION REMARK 900 RELATED ID: 1OKO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA LECTIN 1 COMPLEXED WITH REMARK 900 GALACTOSE AT 1.6 A RESOLUTION REMARK 900 RELATED ID: 3ZYH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PA-IL LECTIN COMPLEXED WITH GALBG0 AT 1.5 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 2WYF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PA-IL LECTIN COMPLEXED WITH AGAL12BGAL-O-MET REMARK 900 AT 2.4 A RESOLUTION REMARK 900 RELATED ID: 3ZYB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PA-IL LECTIN COMPLEXED WITH GALAG0 AT 2.3 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 3ZYF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PA-IL LECTIN COMPLEXED WITH NPG AT 1.9 A REMARK 900 RESOLUTION REMARK 999 REMARK 999 SEQUENCE REMARK 999 ALL NUMBERING SHIFTED BY 1 SINCE N-TERMINAL METHIONINE IS REMARK 999 CLEAVED. DBREF 4A6S A 1 121 UNP Q05097 PA1L_PSEAE 2 122 DBREF 4A6S B 1 121 UNP Q05097 PA1L_PSEAE 2 122 DBREF 4A6S C 1 121 UNP Q05097 PA1L_PSEAE 2 122 DBREF 4A6S D 1 121 UNP Q05097 PA1L_PSEAE 2 122 SEQRES 1 A 121 ALA TRP LYS GLY GLU VAL LEU ALA ASN ASN GLU ALA GLY SEQRES 2 A 121 GLN VAL THR SER ILE ILE TYR ASN PRO GLY ASP VAL ILE SEQRES 3 A 121 THR ILE VAL ALA ALA GLY TRP ALA SER TYR GLY PRO THR SEQRES 4 A 121 GLN LYS TRP GLY PRO GLN GLY ASP ARG GLU HIS PRO ASP SEQRES 5 A 121 GLN GLY LEU ILE CYS HIS ASP ALA PHE CYS GLY ALA LEU SEQRES 6 A 121 VAL MET LYS ILE GLY ASN SER GLY THR ILE PRO VAL ASN SEQRES 7 A 121 THR GLY LEU PHE ARG TRP VAL ALA PRO ASN ASN VAL GLN SEQRES 8 A 121 GLY ALA ILE THR LEU ILE TYR ASN ASP VAL PRO GLY THR SEQRES 9 A 121 TYR GLY ASN ASN SER GLY SER PHE SER VAL ASN ILE GLY SEQRES 10 A 121 LYS ASP GLN SER SEQRES 1 B 121 ALA TRP LYS GLY GLU VAL LEU ALA ASN ASN GLU ALA GLY SEQRES 2 B 121 GLN VAL THR SER ILE ILE TYR ASN PRO GLY ASP VAL ILE SEQRES 3 B 121 THR ILE VAL ALA ALA GLY TRP ALA SER TYR GLY PRO THR SEQRES 4 B 121 GLN LYS TRP GLY PRO GLN GLY ASP ARG GLU HIS PRO ASP SEQRES 5 B 121 GLN GLY LEU ILE CYS HIS ASP ALA PHE CYS GLY ALA LEU SEQRES 6 B 121 VAL MET LYS ILE GLY ASN SER GLY THR ILE PRO VAL ASN SEQRES 7 B 121 THR GLY LEU PHE ARG TRP VAL ALA PRO ASN ASN VAL GLN SEQRES 8 B 121 GLY ALA ILE THR LEU ILE TYR ASN ASP VAL PRO GLY THR SEQRES 9 B 121 TYR GLY ASN ASN SER GLY SER PHE SER VAL ASN ILE GLY SEQRES 10 B 121 LYS ASP GLN SER SEQRES 1 C 121 ALA TRP LYS GLY GLU VAL LEU ALA ASN ASN GLU ALA GLY SEQRES 2 C 121 GLN VAL THR SER ILE ILE TYR ASN PRO GLY ASP VAL ILE SEQRES 3 C 121 THR ILE VAL ALA ALA GLY TRP ALA SER TYR GLY PRO THR SEQRES 4 C 121 GLN LYS TRP GLY PRO GLN GLY ASP ARG GLU HIS PRO ASP SEQRES 5 C 121 GLN GLY LEU ILE CYS HIS ASP ALA PHE CYS GLY ALA LEU SEQRES 6 C 121 VAL MET LYS ILE GLY ASN SER GLY THR ILE PRO VAL ASN SEQRES 7 C 121 THR GLY LEU PHE ARG TRP VAL ALA PRO ASN ASN VAL GLN SEQRES 8 C 121 GLY ALA ILE THR LEU ILE TYR ASN ASP VAL PRO GLY THR SEQRES 9 C 121 TYR GLY ASN ASN SER GLY SER PHE SER VAL ASN ILE GLY SEQRES 10 C 121 LYS ASP GLN SER SEQRES 1 D 121 ALA TRP LYS GLY GLU VAL LEU ALA ASN ASN GLU ALA GLY SEQRES 2 D 121 GLN VAL THR SER ILE ILE TYR ASN PRO GLY ASP VAL ILE SEQRES 3 D 121 THR ILE VAL ALA ALA GLY TRP ALA SER TYR GLY PRO THR SEQRES 4 D 121 GLN LYS TRP GLY PRO GLN GLY ASP ARG GLU HIS PRO ASP SEQRES 5 D 121 GLN GLY LEU ILE CYS HIS ASP ALA PHE CYS GLY ALA LEU SEQRES 6 D 121 VAL MET LYS ILE GLY ASN SER GLY THR ILE PRO VAL ASN SEQRES 7 D 121 THR GLY LEU PHE ARG TRP VAL ALA PRO ASN ASN VAL GLN SEQRES 8 D 121 GLY ALA ILE THR LEU ILE TYR ASN ASP VAL PRO GLY THR SEQRES 9 D 121 TYR GLY ASN ASN SER GLY SER PHE SER VAL ASN ILE GLY SEQRES 10 D 121 LYS ASP GLN SER HET CA A1122 1 HET GS9 A1123 22 HET CA B1122 1 HET GS9 B1123 22 HET CA C1122 1 HET GS9 C1123 22 HET CA D1122 1 HET GS9 D1123 22 HETNAM CA CALCIUM ION HETNAM GS9 NAPHTHALEN-2-YL 1-THIO-BETA-D-GALACTOPYRANOSIDE HETSYN GS9 NAPHTHALEN-2-YL 1-THIO-BETA-D-GALACTOSIDE; NAPHTHALEN- HETSYN 2 GS9 2-YL 1-THIO-D-GALACTOSIDE; NAPHTHALEN-2-YL 1-THIO- HETSYN 3 GS9 GALACTOSIDE FORMUL 5 CA 4(CA 2+) FORMUL 6 GS9 4(C16 H18 O5 S) FORMUL 13 HOH *234(H2 O) HELIX 1 1 THR A 104 ASN A 108 5 5 HELIX 2 2 THR B 104 ASN B 108 5 5 HELIX 3 3 THR C 104 ASN C 108 5 5 HELIX 4 4 THR D 104 ASN D 108 5 5 SHEET 1 AA 2 TRP A 2 LEU A 7 0 SHEET 2 AA 2 SER A 109 LYS A 118 -1 O PHE A 112 N VAL A 6 SHEET 1 AB 2 ALA A 34 SER A 35 0 SHEET 2 AB 2 SER A 109 LYS A 118 -1 O SER A 109 N SER A 35 SHEET 1 AC 4 GLY A 80 TRP A 84 0 SHEET 2 AC 4 ILE A 26 ALA A 31 -1 O ILE A 26 N TRP A 84 SHEET 3 AC 4 SER A 109 LYS A 118 -1 O SER A 113 N ALA A 31 SHEET 4 AC 4 ALA A 34 SER A 35 -1 O SER A 35 N SER A 109 SHEET 1 AD 4 GLY A 80 TRP A 84 0 SHEET 2 AD 4 ILE A 26 ALA A 31 -1 O ILE A 26 N TRP A 84 SHEET 3 AD 4 SER A 109 LYS A 118 -1 O SER A 113 N ALA A 31 SHEET 4 AD 4 TRP A 2 LEU A 7 -1 O TRP A 2 N ILE A 116 SHEET 1 AE 4 GLN A 14 TYR A 20 0 SHEET 2 AE 4 GLY A 92 TYR A 98 -1 O GLY A 92 N TYR A 20 SHEET 3 AE 4 LEU A 65 ILE A 69 -1 O VAL A 66 N ILE A 97 SHEET 4 AE 4 ILE A 75 PRO A 76 -1 O ILE A 75 N MET A 67 SHEET 1 BA 4 TRP B 2 LEU B 7 0 SHEET 2 BA 4 SER B 109 LYS B 118 -1 O PHE B 112 N VAL B 6 SHEET 3 BA 4 ILE B 26 SER B 35 -1 O THR B 27 N GLY B 117 SHEET 4 BA 4 GLY B 80 TRP B 84 -1 O LEU B 81 N ILE B 28 SHEET 1 BB 4 GLN B 14 TYR B 20 0 SHEET 2 BB 4 GLY B 92 TYR B 98 -1 O GLY B 92 N TYR B 20 SHEET 3 BB 4 LEU B 65 ILE B 69 -1 O VAL B 66 N ILE B 97 SHEET 4 BB 4 THR B 74 PRO B 76 -1 O ILE B 75 N MET B 67 SHEET 1 BC 4 SER B 121 LEU B 7 0 SHEET 2 BC 4 SER C 109 LYS C 118 -1 O PHE C 112 N VAL C 6 SHEET 3 BC 4 ILE C 26 SER C 35 -1 O THR C 27 N GLY C 117 SHEET 4 BC 4 GLY C 80 TRP C 84 -1 O LEU C 81 N ILE C 28 SHEET 1 CA 4 GLN C 14 TYR C 20 0 SHEET 2 CA 4 GLY C 92 TYR C 98 -1 O GLY C 92 N TYR C 20 SHEET 3 CA 4 LEU C 65 ILE C 69 -1 O VAL C 66 N ILE C 97 SHEET 4 CA 4 ILE C 75 PRO C 76 -1 O ILE C 75 N MET C 67 SHEET 1 DA 4 TRP D 2 LEU D 7 0 SHEET 2 DA 4 SER D 109 ASP D 119 -1 O PHE D 112 N VAL D 6 SHEET 3 DA 4 VAL D 25 SER D 35 -1 O VAL D 25 N ASP D 119 SHEET 4 DA 4 GLY D 80 TRP D 84 -1 O LEU D 81 N ILE D 28 SHEET 1 DB 4 GLN D 14 TYR D 20 0 SHEET 2 DB 4 GLY D 92 TYR D 98 -1 O GLY D 92 N TYR D 20 SHEET 3 DB 4 LEU D 65 ILE D 69 -1 O VAL D 66 N ILE D 97 SHEET 4 DB 4 ILE D 75 PRO D 76 -1 O ILE D 75 N MET D 67 LINK CA CA A1122 O3 GS9 A1123 1555 1555 2.50 LINK CA CA A1122 O4 GS9 A1123 1555 1555 2.44 LINK CA CA B1122 O3 GS9 B1123 1555 1555 2.26 LINK CA CA B1122 O4 GS9 B1123 1555 1555 2.59 LINK CA CA C1122 O4 GS9 C1123 1555 1555 2.60 LINK CA CA C1122 O3 GS9 C1123 1555 1555 2.53 LINK CA CA D1122 O4 GS9 D1123 1555 1555 2.44 LINK CA CA D1122 O3 GS9 D1123 1555 1555 2.55 CRYST1 54.334 54.334 390.501 90.00 90.00 120.00 P 32 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018405 0.010626 0.000000 0.00000 SCALE2 0.000000 0.021252 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002561 0.00000 MTRIX1 1 -0.643100 0.159800 0.748900 -40.80000 1 MTRIX2 1 0.162100 -0.927400 0.337100 30.80000 1 MTRIX3 1 0.748400 0.338500 0.570500 12.84000 1 MTRIX1 2 0.122700 0.686700 -0.716500 1.79600 1 MTRIX2 2 0.687800 -0.579300 -0.437500 52.92000 1 MTRIX3 2 -0.715500 -0.439100 -0.543400 53.56000 1 MTRIX1 3 -0.500400 -0.862000 -0.081030 8.54000 1 MTRIX2 3 -0.865500 0.495600 0.073400 1.26900 1 MTRIX3 3 -0.023100 1.269000 -0.994000 62.31000 1