HEADER APOPTOSIS 04-FEB-13 3ZLR TITLE CRYSTAL STRUCTURE OF BCL-XL IN COMPLEX WITH INHIBITOR (WEHI-539) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BCL-2-LIKE PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-26,83-209; COMPND 5 SYNONYM: BCL2-L-1, APOPTOSIS REGULATOR BCL-X, BCL-XL; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-6P3 KEYWDS APOPTOSIS, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR P.E.CZABOTAR,G.L.LESSENE,B.J.SMITH,P.M.COLMAN REVDAT 5 20-DEC-23 3ZLR 1 REMARK REVDAT 4 13-JUN-18 3ZLR 1 TITLE JRNL REVDAT 3 05-JUN-13 3ZLR 1 JRNL REVDAT 2 08-MAY-13 3ZLR 1 JRNL REVDAT 1 24-APR-13 3ZLR 0 JRNL AUTH G.L.LESSENE,P.E.CZABOTAR,B.E.SLEEBS,K.ZOBEL,K.L.LOWES, JRNL AUTH 2 J.M.ADAMS,J.B.BAELL,P.M.COLMAN,K.DESHAYES,W.J.FAIRBROTHER, JRNL AUTH 3 J.A.FLYGARE,P.GIBBONS,W.J.A.KERSTEN,S.KULASEGARAM,R.M.MOSS, JRNL AUTH 4 J.P.PARISOT,B.J.SMITH,I.P.STREET,H.YANG,D.C.S.HUANG, JRNL AUTH 5 K.G.WATSON JRNL TITL STRUCTURE-GUIDED DESIGN OF A SELECTIVE BCL-XL INHIBITOR JRNL REF NAT.CHEM.BIOL. V. 9 390 2013 JRNL REFN ISSN 1552-4450 JRNL PMID 23603658 JRNL DOI 10.1038/NCHEMBIO.1246 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 22506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1152 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0118 - 4.0516 1.00 2986 144 0.1561 0.1838 REMARK 3 2 4.0516 - 3.2162 0.99 2784 146 0.1382 0.1770 REMARK 3 3 3.2162 - 2.8097 0.99 2721 127 0.1619 0.2243 REMARK 3 4 2.8097 - 2.5529 0.98 2642 164 0.1609 0.2099 REMARK 3 5 2.5529 - 2.3699 0.98 2672 132 0.1602 0.2409 REMARK 3 6 2.3699 - 2.2302 0.97 2606 160 0.1616 0.2360 REMARK 3 7 2.2302 - 2.1185 0.97 2590 147 0.1686 0.2288 REMARK 3 8 2.1185 - 2.0263 0.88 2353 132 0.2021 0.2334 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2501 REMARK 3 ANGLE : 1.196 3390 REMARK 3 CHIRALITY : 0.065 338 REMARK 3 PLANARITY : 0.005 433 REMARK 3 DIHEDRAL : 12.914 876 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ -4:20) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0427 12.5416 -35.5281 REMARK 3 T TENSOR REMARK 3 T11: 0.1381 T22: 0.0659 REMARK 3 T33: 0.1227 T12: -0.0107 REMARK 3 T13: -0.0162 T23: 0.0367 REMARK 3 L TENSOR REMARK 3 L11: 1.1823 L22: 3.3944 REMARK 3 L33: 7.3685 L12: -0.7105 REMARK 3 L13: -1.2035 L23: 3.6516 REMARK 3 S TENSOR REMARK 3 S11: -0.1446 S12: 0.0288 S13: -0.0164 REMARK 3 S21: -0.0671 S22: 0.0028 S23: -0.0122 REMARK 3 S31: 0.0385 S32: -0.2805 S33: 0.1398 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 21:100) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9083 -2.0636 -44.1158 REMARK 3 T TENSOR REMARK 3 T11: 0.1607 T22: 0.0985 REMARK 3 T33: 0.0918 T12: 0.0027 REMARK 3 T13: 0.0274 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 2.6671 L22: 2.0868 REMARK 3 L33: 1.6528 L12: 1.2796 REMARK 3 L13: 1.9152 L23: 1.3946 REMARK 3 S TENSOR REMARK 3 S11: 0.0599 S12: 0.0469 S13: -0.0646 REMARK 3 S21: -0.0013 S22: 0.0748 S23: -0.1630 REMARK 3 S31: -0.0876 S32: -0.0689 S33: -0.1163 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 101:112) REMARK 3 ORIGIN FOR THE GROUP (A): -24.2542 -9.6849 -47.5117 REMARK 3 T TENSOR REMARK 3 T11: 0.2172 T22: 0.2311 REMARK 3 T33: 0.2111 T12: -0.0625 REMARK 3 T13: -0.0863 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 7.0197 L22: 5.2104 REMARK 3 L33: 7.7056 L12: -3.5477 REMARK 3 L13: -5.9058 L23: 3.3403 REMARK 3 S TENSOR REMARK 3 S11: -0.3010 S12: 0.1835 S13: 0.3277 REMARK 3 S21: -0.6092 S22: 0.1365 S23: 0.5772 REMARK 3 S31: 0.2752 S32: -0.6193 S33: 0.1522 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 113:131) REMARK 3 ORIGIN FOR THE GROUP (A): -26.1638 -10.7067 -34.1325 REMARK 3 T TENSOR REMARK 3 T11: 0.1039 T22: 0.1719 REMARK 3 T33: 0.2458 T12: -0.0232 REMARK 3 T13: 0.0020 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 3.8376 L22: 5.9071 REMARK 3 L33: 3.4662 L12: -4.4727 REMARK 3 L13: -1.9185 L23: 2.0781 REMARK 3 S TENSOR REMARK 3 S11: -0.2033 S12: -0.0672 S13: -0.5969 REMARK 3 S21: -0.0720 S22: 0.1114 S23: 0.7556 REMARK 3 S31: 0.2144 S32: -0.4519 S33: 0.0702 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 132:136) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3724 -20.6532 -41.8338 REMARK 3 T TENSOR REMARK 3 T11: 0.2507 T22: 0.1107 REMARK 3 T33: 0.2241 T12: -0.0160 REMARK 3 T13: -0.0596 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 7.3717 L22: 2.5132 REMARK 3 L33: 4.5474 L12: 1.4539 REMARK 3 L13: -5.4926 L23: -0.3985 REMARK 3 S TENSOR REMARK 3 S11: -0.3519 S12: 0.3124 S13: -0.0635 REMARK 3 S21: -0.5579 S22: 0.5118 S23: 0.6653 REMARK 3 S31: 0.4923 S32: -0.0440 S33: -0.0847 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 137:156) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7071 -5.2577 -40.8922 REMARK 3 T TENSOR REMARK 3 T11: 0.1230 T22: 0.1083 REMARK 3 T33: 0.0498 T12: 0.0033 REMARK 3 T13: -0.0305 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.3760 L22: 4.8589 REMARK 3 L33: 1.5002 L12: -1.2723 REMARK 3 L13: -0.3111 L23: 0.6670 REMARK 3 S TENSOR REMARK 3 S11: -0.1228 S12: 0.0515 S13: -0.1362 REMARK 3 S21: 0.0293 S22: 0.0045 S23: 0.5090 REMARK 3 S31: -0.0282 S32: -0.1028 S33: 0.1164 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 157:177) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4636 -3.3899 -31.8128 REMARK 3 T TENSOR REMARK 3 T11: 0.0813 T22: 0.1118 REMARK 3 T33: 0.0682 T12: -0.0231 REMARK 3 T13: 0.0200 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 3.8531 L22: 5.7066 REMARK 3 L33: 2.9064 L12: -2.0587 REMARK 3 L13: -0.0743 L23: -0.0300 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: 0.0109 S13: -0.1920 REMARK 3 S21: 0.1618 S22: 0.0300 S23: 0.3838 REMARK 3 S31: 0.0350 S32: -0.0873 S33: -0.0457 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 178:186) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0628 -17.3019 -33.7187 REMARK 3 T TENSOR REMARK 3 T11: 0.1463 T22: 0.1308 REMARK 3 T33: 0.2058 T12: -0.0020 REMARK 3 T13: -0.0030 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 8.5574 L22: 5.8144 REMARK 3 L33: 4.2718 L12: -4.6271 REMARK 3 L13: -1.2709 L23: -1.0351 REMARK 3 S TENSOR REMARK 3 S11: 0.0722 S12: -0.6844 S13: 0.5227 REMARK 3 S21: 0.2257 S22: -0.1292 S23: -0.7773 REMARK 3 S31: 0.2615 S32: 0.2885 S33: -0.0097 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 187:197) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4180 -10.2131 -42.6974 REMARK 3 T TENSOR REMARK 3 T11: 0.1812 T22: 0.0705 REMARK 3 T33: 0.2256 T12: 0.0021 REMARK 3 T13: 0.0472 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 6.5875 L22: 7.0267 REMARK 3 L33: 7.4137 L12: -0.6451 REMARK 3 L13: 2.6931 L23: 1.6375 REMARK 3 S TENSOR REMARK 3 S11: -0.1310 S12: 0.3275 S13: -0.2458 REMARK 3 S21: -0.1995 S22: 0.2199 S23: -1.0033 REMARK 3 S31: -0.1888 S32: 0.6570 S33: 0.0583 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 4:100) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5897 8.8868 -41.4912 REMARK 3 T TENSOR REMARK 3 T11: 0.1378 T22: 0.0810 REMARK 3 T33: 0.0700 T12: 0.0015 REMARK 3 T13: 0.0054 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 2.2006 L22: 2.0863 REMARK 3 L33: 0.8734 L12: 1.5947 REMARK 3 L13: -0.5622 L23: -0.1972 REMARK 3 S TENSOR REMARK 3 S11: 0.0339 S12: -0.0479 S13: 0.1042 REMARK 3 S21: 0.0891 S22: -0.1109 S23: 0.0563 REMARK 3 S31: -0.1601 S32: 0.0572 S33: 0.0480 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 101:112) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6327 21.7730 -49.1089 REMARK 3 T TENSOR REMARK 3 T11: 0.3423 T22: 0.2738 REMARK 3 T33: 0.2636 T12: 0.0086 REMARK 3 T13: 0.0937 T23: 0.0797 REMARK 3 L TENSOR REMARK 3 L11: 7.5060 L22: 6.9407 REMARK 3 L33: 8.8866 L12: -5.6387 REMARK 3 L13: 6.8325 L23: -4.5044 REMARK 3 S TENSOR REMARK 3 S11: 0.6572 S12: 0.3368 S13: 0.0787 REMARK 3 S21: -1.0786 S22: -0.0952 S23: -0.4503 REMARK 3 S31: 0.2708 S32: 0.3152 S33: -0.2646 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 113:136) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1551 24.3977 -37.2162 REMARK 3 T TENSOR REMARK 3 T11: 0.1510 T22: 0.1714 REMARK 3 T33: 0.2021 T12: -0.0745 REMARK 3 T13: 0.0374 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 6.6556 L22: 6.1885 REMARK 3 L33: 3.6771 L12: -3.6752 REMARK 3 L13: 2.2313 L23: -2.1729 REMARK 3 S TENSOR REMARK 3 S11: -0.0480 S12: -0.1229 S13: 0.2367 REMARK 3 S21: -0.1888 S22: -0.0197 S23: -0.7889 REMARK 3 S31: -0.2765 S32: 0.4026 S33: 0.1065 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 137:186) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2493 18.4347 -37.1700 REMARK 3 T TENSOR REMARK 3 T11: 0.0786 T22: 0.0741 REMARK 3 T33: 0.0747 T12: -0.0206 REMARK 3 T13: -0.0009 T23: 0.0367 REMARK 3 L TENSOR REMARK 3 L11: 2.2510 L22: 4.2085 REMARK 3 L33: 2.2254 L12: -0.4039 REMARK 3 L13: -0.1686 L23: 0.5600 REMARK 3 S TENSOR REMARK 3 S11: -0.0278 S12: -0.0050 S13: -0.0626 REMARK 3 S21: 0.1047 S22: -0.0044 S23: -0.1049 REMARK 3 S31: 0.0362 S32: 0.0723 S33: 0.0344 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 187:203) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4509 21.8689 -46.4194 REMARK 3 T TENSOR REMARK 3 T11: 0.2611 T22: 0.2418 REMARK 3 T33: 0.3191 T12: 0.0093 REMARK 3 T13: -0.0852 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 6.5679 L22: 2.9443 REMARK 3 L33: 2.6619 L12: -0.1821 REMARK 3 L13: 0.3516 L23: 1.9607 REMARK 3 S TENSOR REMARK 3 S11: 0.0656 S12: 0.7036 S13: -0.1143 REMARK 3 S21: -0.6715 S22: -0.2578 S23: 0.5956 REMARK 3 S31: -0.6074 S32: -0.5352 S33: 0.1030 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ZLR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1290055719. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MEECO CAPILLARY REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS-IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22506 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 49.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 86.57 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.6 REMARK 200 DATA REDUNDANCY IN SHELL : 10.78 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZK6 CHAIN A REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M (NH4)2 SO4, 100 MM MES PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.97500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 158.96250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.98750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 105.97500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.98750 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 158.96250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 198 REMARK 465 ALA A 199 REMARK 465 ALA A 200 REMARK 465 ALA A 201 REMARK 465 GLU A 202 REMARK 465 SER A 203 REMARK 465 ARG A 204 REMARK 465 LYS A 205 REMARK 465 GLY A 206 REMARK 465 GLN A 207 REMARK 465 GLU A 208 REMARK 465 ARG A 209 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLN B 3 REMARK 465 ARG B 204 REMARK 465 LYS B 205 REMARK 465 GLY B 206 REMARK 465 GLN B 207 REMARK 465 GLU B 208 REMARK 465 ARG B 209 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2086 O HOH A 2129 2.14 REMARK 500 O HOH B 2071 O HOH B 2076 2.16 REMARK 500 OE2 GLU B 7 O HOH B 2004 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 113 66.38 36.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE X0B A 1198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE X0B B 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZLN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BCL-XL IN COMPLEX WITH INHIBITOR (COMPOUND 3). REMARK 900 RELATED ID: 3ZLO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BCL-XL IN COMPLEX WITH INHIBITOR (COMPOUND 6). REMARK 900 RELATED ID: 3ZK6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BCL-XL IN COMPLEX WITH INHIBITOR (COMPOUND 2). DBREF 3ZLR A 1 26 UNP Q07817 B2CL1_HUMAN 1 26 DBREF 3ZLR A 83 209 UNP Q07817 B2CL1_HUMAN 83 209 DBREF 3ZLR B 1 26 UNP Q07817 B2CL1_HUMAN 1 26 DBREF 3ZLR B 83 209 UNP Q07817 B2CL1_HUMAN 83 209 SEQADV 3ZLR GLY A -4 UNP Q07817 EXPRESSION TAG SEQADV 3ZLR PRO A -3 UNP Q07817 EXPRESSION TAG SEQADV 3ZLR LEU A -2 UNP Q07817 EXPRESSION TAG SEQADV 3ZLR GLY A -1 UNP Q07817 EXPRESSION TAG SEQADV 3ZLR SER A 0 UNP Q07817 EXPRESSION TAG SEQADV 3ZLR GLY B -4 UNP Q07817 EXPRESSION TAG SEQADV 3ZLR PRO B -3 UNP Q07817 EXPRESSION TAG SEQADV 3ZLR LEU B -2 UNP Q07817 EXPRESSION TAG SEQADV 3ZLR GLY B -1 UNP Q07817 EXPRESSION TAG SEQADV 3ZLR SER B 0 UNP Q07817 EXPRESSION TAG SEQRES 1 A 158 GLY PRO LEU GLY SER MET SER GLN SER ASN ARG GLU LEU SEQRES 2 A 158 VAL VAL ASP PHE LEU SER TYR LYS LEU SER GLN LYS GLY SEQRES 3 A 158 TYR SER TRP SER GLN MET ALA ALA VAL LYS GLN ALA LEU SEQRES 4 A 158 ARG GLU ALA GLY ASP GLU PHE GLU LEU ARG TYR ARG ARG SEQRES 5 A 158 ALA PHE SER ASP LEU THR SER GLN LEU HIS ILE THR PRO SEQRES 6 A 158 GLY THR ALA TYR GLN SER PHE GLU GLN VAL VAL ASN GLU SEQRES 7 A 158 LEU PHE ARG ASP GLY VAL ASN TRP GLY ARG ILE VAL ALA SEQRES 8 A 158 PHE PHE SER PHE GLY GLY ALA LEU CYS VAL GLU SER VAL SEQRES 9 A 158 ASP LYS GLU MET GLN VAL LEU VAL SER ARG ILE ALA ALA SEQRES 10 A 158 TRP MET ALA THR TYR LEU ASN ASP HIS LEU GLU PRO TRP SEQRES 11 A 158 ILE GLN GLU ASN GLY GLY TRP ASP THR PHE VAL GLU LEU SEQRES 12 A 158 TYR GLY ASN ASN ALA ALA ALA GLU SER ARG LYS GLY GLN SEQRES 13 A 158 GLU ARG SEQRES 1 B 158 GLY PRO LEU GLY SER MET SER GLN SER ASN ARG GLU LEU SEQRES 2 B 158 VAL VAL ASP PHE LEU SER TYR LYS LEU SER GLN LYS GLY SEQRES 3 B 158 TYR SER TRP SER GLN MET ALA ALA VAL LYS GLN ALA LEU SEQRES 4 B 158 ARG GLU ALA GLY ASP GLU PHE GLU LEU ARG TYR ARG ARG SEQRES 5 B 158 ALA PHE SER ASP LEU THR SER GLN LEU HIS ILE THR PRO SEQRES 6 B 158 GLY THR ALA TYR GLN SER PHE GLU GLN VAL VAL ASN GLU SEQRES 7 B 158 LEU PHE ARG ASP GLY VAL ASN TRP GLY ARG ILE VAL ALA SEQRES 8 B 158 PHE PHE SER PHE GLY GLY ALA LEU CYS VAL GLU SER VAL SEQRES 9 B 158 ASP LYS GLU MET GLN VAL LEU VAL SER ARG ILE ALA ALA SEQRES 10 B 158 TRP MET ALA THR TYR LEU ASN ASP HIS LEU GLU PRO TRP SEQRES 11 B 158 ILE GLN GLU ASN GLY GLY TRP ASP THR PHE VAL GLU LEU SEQRES 12 B 158 TYR GLY ASN ASN ALA ALA ALA GLU SER ARG LYS GLY GLN SEQRES 13 B 158 GLU ARG HET X0B A1198 41 HET EDO A1199 4 HET EDO A1200 4 HET SO4 A1201 5 HET X0B B1204 41 HET SO4 B1205 5 HET SO4 B1206 5 HETNAM X0B 5-[3-[4-(AMINOMETHYL)PHENOXY]PROPYL]-2-[(8E)-8-(1,3- HETNAM 2 X0B BENZOTHIAZOL-2-YLHYDRAZINYLIDENE)-6,7-DIHYDRO-5H- HETNAM 3 X0B NAPHTHALEN-2-YL]-1,3-THIAZOLE-4-CARBOXYLIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 X0B 2(C31 H29 N5 O3 S2) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 SO4 3(O4 S 2-) FORMUL 10 HOH *262(H2 O) HELIX 1 1 GLY A -1 LYS A 20 1 22 HELIX 2 2 SER A 25 TYR A 101 1 21 HELIX 3 3 ARG A 102 PHE A 105 5 4 HELIX 4 4 ASP A 107 HIS A 113 1 7 HELIX 5 5 ALA A 119 PHE A 131 1 13 HELIX 6 6 ASN A 136 LYS A 157 1 22 HELIX 7 7 VAL A 161 LEU A 178 1 18 HELIX 8 8 LEU A 178 ASN A 185 1 8 HELIX 9 9 GLY A 186 GLY A 196 1 11 HELIX 10 10 SER B 4 LYS B 20 1 17 HELIX 11 11 MET B 83 TYR B 101 1 19 HELIX 12 12 ARG B 102 PHE B 105 5 4 HELIX 13 13 ASP B 107 HIS B 113 1 7 HELIX 14 14 ALA B 119 ASN B 128 1 10 HELIX 15 15 ASN B 136 LYS B 157 1 22 HELIX 16 16 VAL B 161 LEU B 178 1 18 HELIX 17 17 LEU B 178 ASN B 185 1 8 HELIX 18 18 GLY B 186 GLY B 196 1 11 HELIX 19 19 ASN B 198 SER B 203 1 6 SITE 1 AC1 23 PHE A 97 TYR A 101 ARG A 102 PHE A 105 SITE 2 AC1 23 SER A 106 ASP A 107 LEU A 108 GLU A 129 SITE 3 AC1 23 LEU A 130 ARG A 132 ASN A 136 GLY A 138 SITE 4 AC1 23 ARG A 139 SER A 145 PHE A 146 ALA A 149 SITE 5 AC1 23 HOH A2074 HOH A2126 HOH A2128 HOH A2160 SITE 6 AC1 23 HOH A2161 ALA B 199 SER B 203 SITE 1 AC2 4 PHE A 131 VAL A 135 TYR A 173 HIS A 177 SITE 1 AC3 7 TYR A 15 HOH A2073 HOH A2074 HOH A2164 SITE 2 AC3 7 GLN B 88 GLU B 92 HOH B2029 SITE 1 AC4 5 ASN A 136 TRP A 137 GLY A 138 TYR A 195 SITE 2 AC4 5 HOH A2165 SITE 1 AC5 19 ALA B 93 GLU B 96 ARG B 100 TYR B 101 SITE 2 AC5 19 ARG B 102 PHE B 105 SER B 106 ASP B 107 SITE 3 AC5 19 LEU B 108 GLU B 129 LEU B 130 ASN B 136 SITE 4 AC5 19 GLY B 138 ARG B 139 PHE B 146 TYR B 195 SITE 5 AC5 19 HOH B2036 HOH B2064 HOH B2094 SITE 1 AC6 6 ARG B 100 ASN B 136 TRP B 137 GLY B 138 SITE 2 AC6 6 TYR B 195 HOH B2095 SITE 1 AC7 6 ASN A 175 HOH A2020 SER B 4 ASN B 5 SITE 2 AC7 6 ARG B 6 HOH B2096 CRYST1 56.241 56.241 211.950 90.00 90.00 90.00 P 43 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017781 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017781 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004718 0.00000