HEADER IMMUNE SYSTEM 16-DEC-11 3V5K TITLE HLA2.1 KVAELVWFL COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: MHC CLASS I ANTIGEN A*2; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B, E; COMPND 9 SYNONYM: BETA-2-MICROGLOBULIN FORM PI 5.3; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: HIV-BASED ALTERED-PEPTIDE LIGAND KVAELVWFL; COMPND 13 CHAIN: C, F; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA*0201, HLA-A, HLAA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLM1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: B2M, BETA-2-MICROGLOBULIN, CDABP0092, HDCMA22P; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PLM1; SOURCE 21 MOL_ID: 3; SOURCE 22 SYNTHETIC: YES; SOURCE 23 ORGANISM_SCIENTIFIC: HUMAN; SOURCE 24 ORGANISM_COMMON: HOMO SAPIENS; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 OTHER_DETAILS: CHEMICALLY SYNTHESIZED PEPTIDE BASED ON SEQUENCE FROM SOURCE 27 HIV KEYWDS PEPTIDE-BINDING GROOVE, T CELL RECEPTOR, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR E.J.COLLINS,H.Y.LEE REVDAT 2 08-NOV-17 3V5K 1 REMARK REVDAT 1 19-DEC-12 3V5K 0 JRNL AUTH E.J.COLLINS,H.Y.LEE JRNL TITL PREDICTION OF IMMUNOGENICITY OF ALTERED-PEPTIDE LIGANDS TO JRNL TITL 2 HIV BOUND TO MHC JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 35266 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1754 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 18 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.38 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.53 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2773 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2066 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2629 REMARK 3 BIN R VALUE (WORKING SET) : 0.2032 REMARK 3 BIN FREE R VALUE : 0.2664 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.19 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 144 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6326 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 289 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.89370 REMARK 3 B22 (A**2) : -12.45570 REMARK 3 B33 (A**2) : 9.56200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.28170 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.305 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.381 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6532 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8870 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2240 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 173 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 948 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6532 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 797 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7299 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.07 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.41 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.92 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|1 - 183} REMARK 3 ORIGIN FOR THE GROUP (A): 5.9884 0.0471 35.8025 REMARK 3 T TENSOR REMARK 3 T11: -0.1509 T22: -0.0119 REMARK 3 T33: -0.1064 T12: -0.0179 REMARK 3 T13: 0.0092 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 2.9517 L22: 0.8799 REMARK 3 L33: 2.3229 L12: 0.2498 REMARK 3 L13: 0.5504 L23: 0.4861 REMARK 3 S TENSOR REMARK 3 S11: 0.0574 S12: 0.2632 S13: 0.1868 REMARK 3 S21: 0.0389 S22: -0.0321 S23: 0.1308 REMARK 3 S31: 0.1281 S32: -0.2763 S33: -0.0253 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|184 - 275} REMARK 3 ORIGIN FOR THE GROUP (A): 37.5118 3.8751 19.1282 REMARK 3 T TENSOR REMARK 3 T11: -0.0916 T22: 0.0116 REMARK 3 T33: -0.1431 T12: 0.0235 REMARK 3 T13: 0.0171 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 4.4134 L22: 0.7814 REMARK 3 L33: 5.6927 L12: 0.7350 REMARK 3 L13: -2.2821 L23: -0.2930 REMARK 3 S TENSOR REMARK 3 S11: -0.0666 S12: 0.5443 S13: -0.0049 REMARK 3 S21: -0.1032 S22: 0.1556 S23: -0.0712 REMARK 3 S31: -0.2079 S32: -0.0356 S33: -0.0889 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {B|0 - 99} REMARK 3 ORIGIN FOR THE GROUP (A): 26.5958 -14.2449 27.2031 REMARK 3 T TENSOR REMARK 3 T11: -0.0439 T22: -0.0460 REMARK 3 T33: -0.0173 T12: -0.0176 REMARK 3 T13: -0.0144 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 2.4079 L22: 0.6918 REMARK 3 L33: 1.2237 L12: -0.2345 REMARK 3 L13: 0.1628 L23: -0.1941 REMARK 3 S TENSOR REMARK 3 S11: -0.0086 S12: 0.2085 S13: -0.3909 REMARK 3 S21: -0.1719 S22: 0.0464 S23: -0.0675 REMARK 3 S31: 0.2299 S32: 0.0421 S33: -0.0378 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {C|1 - 9} REMARK 3 ORIGIN FOR THE GROUP (A): -1.9797 0.8338 39.8728 REMARK 3 T TENSOR REMARK 3 T11: -0.1042 T22: 0.0854 REMARK 3 T33: 0.0317 T12: -0.0581 REMARK 3 T13: 0.0319 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.4869 L22: 0.0000 REMARK 3 L33: 0.8385 L12: 0.3739 REMARK 3 L13: -2.3280 L23: 2.9107 REMARK 3 S TENSOR REMARK 3 S11: -0.0142 S12: -0.0280 S13: 0.0545 REMARK 3 S21: -0.1023 S22: 0.0368 S23: -0.0246 REMARK 3 S31: -0.0443 S32: -0.0283 S33: -0.0226 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {D|1 - 183} REMARK 3 ORIGIN FOR THE GROUP (A): 25.4033 35.7321 19.2427 REMARK 3 T TENSOR REMARK 3 T11: -0.1235 T22: -0.0370 REMARK 3 T33: -0.0897 T12: 0.0042 REMARK 3 T13: -0.0133 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 2.2964 L22: 0.7097 REMARK 3 L33: 2.5296 L12: 0.2289 REMARK 3 L13: -0.3318 L23: -0.2346 REMARK 3 S TENSOR REMARK 3 S11: 0.1227 S12: 0.2324 S13: -0.0672 REMARK 3 S21: 0.0435 S22: -0.0078 S23: -0.1035 REMARK 3 S31: -0.0967 S32: 0.1954 S33: -0.1148 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {D|184 - 275} REMARK 3 ORIGIN FOR THE GROUP (A): -6.1554 31.9805 2.6670 REMARK 3 T TENSOR REMARK 3 T11: -0.1020 T22: 0.0601 REMARK 3 T33: -0.2137 T12: 0.0658 REMARK 3 T13: -0.0182 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 3.9721 L22: 0.8554 REMARK 3 L33: 8.3193 L12: 0.1174 REMARK 3 L13: 2.7731 L23: 0.6726 REMARK 3 S TENSOR REMARK 3 S11: 0.0475 S12: 0.4852 S13: -0.0698 REMARK 3 S21: 0.0033 S22: 0.1523 S23: 0.1068 REMARK 3 S31: 0.5444 S32: 0.1265 S33: -0.1998 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {E|0 - 99} REMARK 3 ORIGIN FOR THE GROUP (A): 4.7512 50.0515 10.7818 REMARK 3 T TENSOR REMARK 3 T11: -0.0309 T22: 0.0149 REMARK 3 T33: -0.0777 T12: -0.0116 REMARK 3 T13: 0.0211 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 1.9394 L22: 0.9022 REMARK 3 L33: 1.1394 L12: -0.6679 REMARK 3 L13: -0.2305 L23: -0.1488 REMARK 3 S TENSOR REMARK 3 S11: 0.0940 S12: 0.2266 S13: 0.1315 REMARK 3 S21: -0.0622 S22: -0.0248 S23: 0.0490 REMARK 3 S31: -0.1782 S32: -0.1078 S33: -0.0693 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {F|1 - 9} REMARK 3 ORIGIN FOR THE GROUP (A): 33.4572 34.9342 22.7646 REMARK 3 T TENSOR REMARK 3 T11: -0.0478 T22: 0.0509 REMARK 3 T33: -0.0015 T12: -0.0120 REMARK 3 T13: -0.0336 T23: -0.0967 REMARK 3 L TENSOR REMARK 3 L11: 0.6105 L22: 0.0000 REMARK 3 L33: 1.1382 L12: -1.3120 REMARK 3 L13: 0.6305 L23: -2.8765 REMARK 3 S TENSOR REMARK 3 S11: -0.0079 S12: 0.0984 S13: -0.0498 REMARK 3 S21: 0.0031 S22: -0.0145 S23: 0.0115 REMARK 3 S31: 0.0817 S32: 0.0479 S33: 0.0224 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3V5K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069622. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35327 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.29400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 MM MES PH6.5 12% PEG 8000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.53900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -124.60 50.01 REMARK 500 TYR A 123 -63.23 -105.99 REMARK 500 SER A 195 -169.27 -126.62 REMARK 500 TRP B 60 -5.01 77.84 REMARK 500 ASP D 29 -123.44 58.01 REMARK 500 TYR D 123 -62.93 -104.98 REMARK 500 SER D 195 -169.76 -124.76 REMARK 500 TRP E 60 -5.42 77.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 276 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3V5D RELATED DB: PDB REMARK 900 RELATED ID: 3V5H RELATED DB: PDB DBREF 3V5K A 1 275 UNP P01892 1A02_HUMAN 25 299 DBREF 3V5K B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 3V5K D 1 275 UNP P01892 1A02_HUMAN 25 299 DBREF 3V5K E 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 3V5K C 1 9 PDB 3V5K 3V5K 1 9 DBREF 3V5K F 1 9 PDB 3V5K 3V5K 1 9 SEQADV 3V5K MET B 0 UNP P61769 EXPRESSION TAG SEQADV 3V5K MET E 0 UNP P61769 EXPRESSION TAG SEQRES 1 A 275 GLY SER HIS SER MET ARG TYR PHE PHE THR SER VAL SER SEQRES 2 A 275 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL GLY SEQRES 3 A 275 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 275 ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP ILE SEQRES 5 A 275 GLU GLN GLU GLY PRO GLU TYR TRP ASP GLY GLU THR ARG SEQRES 6 A 275 LYS VAL LYS ALA HIS SER GLN THR HIS ARG VAL ASP LEU SEQRES 7 A 275 GLY THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 275 SER HIS THR VAL GLN ARG MET TYR GLY CYS ASP VAL GLY SEQRES 9 A 275 SER ASP TRP ARG PHE LEU ARG GLY TYR HIS GLN TYR ALA SEQRES 10 A 275 TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP LEU SEQRES 11 A 275 ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN THR THR SEQRES 12 A 275 LYS HIS LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN LEU SEQRES 13 A 275 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 A 275 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG THR SEQRES 15 A 275 ASP ALA PRO LYS THR HIS MET THR HIS HIS ALA VAL SER SEQRES 16 A 275 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU SER PHE SEQRES 17 A 275 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 A 275 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 A 275 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 275 VAL VAL PRO SER GLY GLN GLU GLN ARG TYR THR CYS HIS SEQRES 21 A 275 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 A 275 TRP GLU SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 9 LYS VAL ALA GLU LEU VAL TRP PHE LEU SEQRES 1 D 275 GLY SER HIS SER MET ARG TYR PHE PHE THR SER VAL SER SEQRES 2 D 275 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL GLY SEQRES 3 D 275 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 D 275 ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP ILE SEQRES 5 D 275 GLU GLN GLU GLY PRO GLU TYR TRP ASP GLY GLU THR ARG SEQRES 6 D 275 LYS VAL LYS ALA HIS SER GLN THR HIS ARG VAL ASP LEU SEQRES 7 D 275 GLY THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 D 275 SER HIS THR VAL GLN ARG MET TYR GLY CYS ASP VAL GLY SEQRES 9 D 275 SER ASP TRP ARG PHE LEU ARG GLY TYR HIS GLN TYR ALA SEQRES 10 D 275 TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP LEU SEQRES 11 D 275 ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN THR THR SEQRES 12 D 275 LYS HIS LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN LEU SEQRES 13 D 275 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 D 275 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG THR SEQRES 15 D 275 ASP ALA PRO LYS THR HIS MET THR HIS HIS ALA VAL SER SEQRES 16 D 275 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU SER PHE SEQRES 17 D 275 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 D 275 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 D 275 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 D 275 VAL VAL PRO SER GLY GLN GLU GLN ARG TYR THR CYS HIS SEQRES 21 D 275 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 D 275 TRP GLU SEQRES 1 E 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 E 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 E 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 E 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 E 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 E 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 E 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 E 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 F 9 LYS VAL ALA GLU LEU VAL TRP PHE LEU HET GOL D 276 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *289(H2 O) HELIX 1 1 ALA A 49 GLU A 53 5 5 HELIX 2 2 GLY A 56 TYR A 85 1 30 HELIX 3 3 ASP A 137 ALA A 150 1 14 HELIX 4 4 HIS A 151 GLY A 162 1 12 HELIX 5 5 GLY A 162 GLY A 175 1 14 HELIX 6 6 GLY A 175 GLN A 180 1 6 HELIX 7 7 GLN A 253 GLN A 255 5 3 HELIX 8 8 ALA D 49 GLU D 53 5 5 HELIX 9 9 GLY D 56 TYR D 85 1 30 HELIX 10 10 ASP D 137 ALA D 150 1 14 HELIX 11 11 HIS D 151 GLY D 162 1 12 HELIX 12 12 GLY D 162 GLY D 175 1 14 HELIX 13 13 GLY D 175 GLN D 180 1 6 HELIX 14 14 GLN D 253 GLN D 255 5 3 SHEET 1 A 8 GLU A 46 PRO A 47 0 SHEET 2 A 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 A 8 ARG A 21 VAL A 28 -1 N VAL A 28 O THR A 31 SHEET 4 A 8 HIS A 3 VAL A 12 -1 N PHE A 8 O VAL A 25 SHEET 5 A 8 THR A 94 VAL A 103 -1 O VAL A 95 N SER A 11 SHEET 6 A 8 PHE A 109 TYR A 118 -1 O GLN A 115 N MET A 98 SHEET 7 A 8 LYS A 121 LEU A 126 -1 O LYS A 121 N TYR A 118 SHEET 8 A 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 B 4 LYS A 186 ALA A 193 0 SHEET 2 B 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 B 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 B 4 GLU A 229 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 C 4 LYS A 186 ALA A 193 0 SHEET 2 C 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 C 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 C 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 D 4 GLU A 222 ASP A 223 0 SHEET 2 D 4 THR A 214 ARG A 219 -1 N ARG A 219 O GLU A 222 SHEET 3 D 4 TYR A 257 GLN A 262 -1 O HIS A 260 N THR A 216 SHEET 4 D 4 LEU A 270 ARG A 273 -1 O LEU A 272 N CYS A 259 SHEET 1 E 4 LYS B 6 SER B 11 0 SHEET 2 E 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 E 4 PHE B 62 PHE B 70 -1 O TYR B 66 N CYS B 25 SHEET 4 E 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 F 4 LYS B 6 SER B 11 0 SHEET 2 F 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 F 4 PHE B 62 PHE B 70 -1 O TYR B 66 N CYS B 25 SHEET 4 F 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 G 4 GLU B 44 ARG B 45 0 SHEET 2 G 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 G 4 TYR B 78 ASN B 83 -1 O ALA B 79 N LEU B 40 SHEET 4 G 4 LYS B 91 LYS B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 H 8 GLU D 46 PRO D 47 0 SHEET 2 H 8 THR D 31 ASP D 37 -1 N ARG D 35 O GLU D 46 SHEET 3 H 8 ARG D 21 VAL D 28 -1 N ALA D 24 O PHE D 36 SHEET 4 H 8 HIS D 3 VAL D 12 -1 N ARG D 6 O TYR D 27 SHEET 5 H 8 THR D 94 VAL D 103 -1 O VAL D 95 N SER D 11 SHEET 6 H 8 PHE D 109 TYR D 118 -1 O GLN D 115 N MET D 98 SHEET 7 H 8 LYS D 121 LEU D 126 -1 O ILE D 124 N TYR D 116 SHEET 8 H 8 TRP D 133 ALA D 135 -1 O THR D 134 N ALA D 125 SHEET 1 I 4 LYS D 186 ALA D 193 0 SHEET 2 I 4 GLU D 198 PHE D 208 -1 O THR D 200 N HIS D 192 SHEET 3 I 4 PHE D 241 PRO D 250 -1 O VAL D 249 N ALA D 199 SHEET 4 I 4 GLU D 229 LEU D 230 -1 N GLU D 229 O ALA D 246 SHEET 1 J 4 LYS D 186 ALA D 193 0 SHEET 2 J 4 GLU D 198 PHE D 208 -1 O THR D 200 N HIS D 192 SHEET 3 J 4 PHE D 241 PRO D 250 -1 O VAL D 249 N ALA D 199 SHEET 4 J 4 ARG D 234 PRO D 235 -1 N ARG D 234 O GLN D 242 SHEET 1 K 4 GLU D 222 ASP D 223 0 SHEET 2 K 4 THR D 214 ARG D 219 -1 N ARG D 219 O GLU D 222 SHEET 3 K 4 TYR D 257 GLN D 262 -1 O HIS D 260 N THR D 216 SHEET 4 K 4 LEU D 270 LEU D 272 -1 O LEU D 272 N CYS D 259 SHEET 1 L 4 LYS E 6 SER E 11 0 SHEET 2 L 4 ASN E 21 PHE E 30 -1 O ASN E 24 N TYR E 10 SHEET 3 L 4 PHE E 62 PHE E 70 -1 O TYR E 66 N CYS E 25 SHEET 4 L 4 GLU E 50 HIS E 51 -1 N GLU E 50 O TYR E 67 SHEET 1 M 4 LYS E 6 SER E 11 0 SHEET 2 M 4 ASN E 21 PHE E 30 -1 O ASN E 24 N TYR E 10 SHEET 3 M 4 PHE E 62 PHE E 70 -1 O TYR E 66 N CYS E 25 SHEET 4 M 4 SER E 55 PHE E 56 -1 N SER E 55 O TYR E 63 SHEET 1 N 4 GLU E 44 ARG E 45 0 SHEET 2 N 4 GLU E 36 LYS E 41 -1 N LYS E 41 O GLU E 44 SHEET 3 N 4 TYR E 78 ASN E 83 -1 O ALA E 79 N LEU E 40 SHEET 4 N 4 LYS E 91 LYS E 94 -1 O LYS E 91 N VAL E 82 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.04 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.02 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.03 SSBOND 4 CYS D 101 CYS D 164 1555 1555 2.05 SSBOND 5 CYS D 203 CYS D 259 1555 1555 2.04 SSBOND 6 CYS E 25 CYS E 80 1555 1555 2.02 CISPEP 1 TYR A 209 PRO A 210 0 0.40 CISPEP 2 HIS B 31 PRO B 32 0 -2.77 CISPEP 3 TYR D 209 PRO D 210 0 -1.59 CISPEP 4 HIS E 31 PRO E 32 0 -3.23 SITE 1 AC1 5 ARG D 44 MET D 45 PRO D 47 TRP D 60 SITE 2 AC1 5 HOH D 347 CRYST1 62.773 87.078 79.683 90.00 90.04 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015930 0.000000 0.000011 0.00000 SCALE2 0.000000 0.011484 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012550 0.00000