HEADER LIGASE/PROTEIN BINDING 02-NOV-11 3UGB TITLE UBCH5C~UBIQUITIN CONJUGATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 D3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-147; COMPND 5 SYNONYM: UBIQUITIN CARRIER PROTEIN D3, UBIQUITIN-CONJUGATING ENZYME COMPND 6 E2(17)KB 3, UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 3, UBIQUITIN- COMPND 7 PROTEIN LIGASE D3; COMPND 8 EC: 6.3.2.19; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: POLYUBIQUITIN-C; COMPND 13 CHAIN: B; COMPND 14 FRAGMENT: UNP RESIDUES 1-76; COMPND 15 SYNONYM: UBIQUITIN; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBC5C, UBCH5C, UBE2D2, UBE2D3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28N; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: UBC; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET24 KEYWDS E2 UBIQUITIN-CONJUGATING ENZYME, UBIQUITIN, UBL CONJUGATION PATHWAY, KEYWDS 2 OXYESTER BOND, UBIQUITIN-PROTEIN LIGASE ACTIVITY, LIGASE-PROTEIN KEYWDS 3 BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.C.PAGE,J.N.PRUNEDA,R.E.KLEVIT,S.MISRA REVDAT 3 13-SEP-23 3UGB 1 REMARK SEQADV LINK REVDAT 2 14-NOV-12 3UGB 1 JRNL REVDAT 1 16-MAY-12 3UGB 0 JRNL AUTH R.C.PAGE,J.N.PRUNEDA,J.AMICK,R.E.KLEVIT,S.MISRA JRNL TITL STRUCTURAL INSIGHTS INTO THE CONFORMATION AND JRNL TITL 2 OLIGOMERIZATION OF E2~UBIQUITIN CONJUGATES. JRNL REF BIOCHEMISTRY V. 51 4175 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22551455 JRNL DOI 10.1021/BI300058M REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.2_869) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 9298 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 467 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 36.99 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.87730 REMARK 3 B22 (A**2) : 3.47030 REMARK 3 B33 (A**2) : 0.40700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.10390 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1819 REMARK 3 ANGLE : 1.071 2466 REMARK 3 CHIRALITY : 0.089 274 REMARK 3 PLANARITY : 0.012 320 REMARK 3 DIHEDRAL : 14.970 696 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 2:25) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2229 -0.8634 -35.8991 REMARK 3 T TENSOR REMARK 3 T11: 0.1840 T22: 0.3693 REMARK 3 T33: 0.3211 T12: 0.0234 REMARK 3 T13: 0.0034 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 6.5471 L22: 3.9464 REMARK 3 L33: 4.4650 L12: 3.2338 REMARK 3 L13: 0.9008 L23: -0.0440 REMARK 3 S TENSOR REMARK 3 S11: -0.0814 S12: -0.0414 S13: -1.0833 REMARK 3 S21: -0.3197 S22: 0.0609 S23: -0.8688 REMARK 3 S31: 0.2180 S32: 0.6901 S33: 0.1054 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 26:65) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9581 0.8857 -32.5569 REMARK 3 T TENSOR REMARK 3 T11: 0.1072 T22: 0.2544 REMARK 3 T33: 0.1396 T12: 0.0813 REMARK 3 T13: -0.0134 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 3.7968 L22: 3.4229 REMARK 3 L33: 2.2792 L12: 2.8299 REMARK 3 L13: -1.2038 L23: -0.2780 REMARK 3 S TENSOR REMARK 3 S11: -0.0827 S12: 0.3466 S13: -0.1317 REMARK 3 S21: -0.3985 S22: 0.0010 S23: -0.1624 REMARK 3 S31: -0.0015 S32: -0.0194 S33: 0.1016 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 66:84) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8919 0.6069 -25.6323 REMARK 3 T TENSOR REMARK 3 T11: 0.0896 T22: 0.1716 REMARK 3 T33: 0.1498 T12: -0.0062 REMARK 3 T13: 0.0068 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 3.7544 L22: 5.9118 REMARK 3 L33: 7.1510 L12: 0.5645 REMARK 3 L13: -2.2327 L23: -3.0206 REMARK 3 S TENSOR REMARK 3 S11: 0.3975 S12: 0.2436 S13: 0.3276 REMARK 3 S21: 0.0273 S22: -0.2922 S23: 0.4697 REMARK 3 S31: -0.2389 S32: -0.1844 S33: -0.1135 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 85:111) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7943 1.1390 -22.7659 REMARK 3 T TENSOR REMARK 3 T11: 0.1341 T22: 0.2627 REMARK 3 T33: 0.1845 T12: -0.0413 REMARK 3 T13: -0.0820 T23: 0.1067 REMARK 3 L TENSOR REMARK 3 L11: 7.8437 L22: 6.8981 REMARK 3 L33: 2.0924 L12: 6.6398 REMARK 3 L13: 0.0979 L23: 0.7890 REMARK 3 S TENSOR REMARK 3 S11: -0.0475 S12: 0.0034 S13: -0.0114 REMARK 3 S21: 0.0761 S22: -0.3957 S23: -0.3117 REMARK 3 S31: -0.2600 S32: 0.3003 S33: 0.1777 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 112:130) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8559 -3.6068 -12.6993 REMARK 3 T TENSOR REMARK 3 T11: 0.2617 T22: 0.1314 REMARK 3 T33: 0.2194 T12: -0.0263 REMARK 3 T13: 0.0367 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 2.2101 L22: 6.5462 REMARK 3 L33: 8.5021 L12: -0.4857 REMARK 3 L13: -2.2421 L23: -4.6476 REMARK 3 S TENSOR REMARK 3 S11: -0.0384 S12: -0.2786 S13: 0.1360 REMARK 3 S21: 0.6649 S22: -0.0323 S23: 0.3149 REMARK 3 S31: -0.2812 S32: 0.1963 S33: 0.1155 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 131:147) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8259 -11.7882 -23.4024 REMARK 3 T TENSOR REMARK 3 T11: 0.1048 T22: 0.1724 REMARK 3 T33: 0.4373 T12: -0.0458 REMARK 3 T13: -0.0365 T23: -0.1249 REMARK 3 L TENSOR REMARK 3 L11: 3.0115 L22: 2.8398 REMARK 3 L33: 2.0611 L12: 1.2910 REMARK 3 L13: 0.4936 L23: 0.8161 REMARK 3 S TENSOR REMARK 3 S11: -0.1264 S12: 0.3533 S13: -0.1089 REMARK 3 S21: 0.0486 S22: -0.1422 S23: 0.5036 REMARK 3 S31: 0.0681 S32: -0.3173 S33: -0.3188 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 1:22) REMARK 3 ORIGIN FOR THE GROUP (A): -33.8018 8.0583 -5.8649 REMARK 3 T TENSOR REMARK 3 T11: 0.2585 T22: 0.2702 REMARK 3 T33: 0.2641 T12: -0.0519 REMARK 3 T13: -0.0175 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 4.2478 L22: 5.9909 REMARK 3 L33: 4.3608 L12: 1.1569 REMARK 3 L13: 0.0840 L23: 2.1733 REMARK 3 S TENSOR REMARK 3 S11: 0.0105 S12: -0.0368 S13: -0.2206 REMARK 3 S21: -0.0273 S22: 0.0205 S23: 0.6114 REMARK 3 S31: 0.0515 S32: -0.6504 S33: 0.0688 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 23:54) REMARK 3 ORIGIN FOR THE GROUP (A): -24.4062 10.5580 -4.9984 REMARK 3 T TENSOR REMARK 3 T11: 0.3077 T22: 0.2031 REMARK 3 T33: 0.1286 T12: -0.0653 REMARK 3 T13: -0.0415 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 3.2583 L22: 3.1493 REMARK 3 L33: 3.3699 L12: -2.9200 REMARK 3 L13: -0.7350 L23: 0.2512 REMARK 3 S TENSOR REMARK 3 S11: -0.0757 S12: -0.4144 S13: -0.0771 REMARK 3 S21: 0.2075 S22: 0.2472 S23: 0.0296 REMARK 3 S31: 0.1384 S32: -0.1141 S33: -0.0810 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 55:76) REMARK 3 ORIGIN FOR THE GROUP (A): -28.2688 14.1792 -7.2435 REMARK 3 T TENSOR REMARK 3 T11: 0.1823 T22: 0.0807 REMARK 3 T33: 0.0889 T12: -0.0797 REMARK 3 T13: -0.0055 T23: 0.0332 REMARK 3 L TENSOR REMARK 3 L11: 2.2801 L22: 2.4725 REMARK 3 L33: 2.2832 L12: -0.5409 REMARK 3 L13: -0.9781 L23: 0.0986 REMARK 3 S TENSOR REMARK 3 S11: -0.0512 S12: 0.2137 S13: 0.0385 REMARK 3 S21: 0.3938 S22: 0.0637 S23: 0.3388 REMARK 3 S31: 0.0251 S32: -0.3491 S33: 0.0614 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UGB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068718. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : VARIMAX CONFOCAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9319 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 52.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 4.890 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.11 REMARK 200 R MERGE FOR SHELL (I) : 0.20400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.7.2_869 REMARK 200 STARTING MODEL: PDB ENTRIES 3TGD AND 1UBQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M TRI-POTASSIUM CITRATE, 20% PEG REMARK 280 3350, PH 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.25500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -31.82868 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 26.25500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -52.12573 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 90 -92.73 -119.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3A33 RELATED DB: PDB REMARK 900 UBCH5 ISOFORM B (UBCH5B) CONJUGATED TO UBIQUITIN REMARK 900 RELATED ID: 3JW0 RELATED DB: PDB REMARK 900 UBCH5 ISOFORM B (UBCH5B) CONJUGATED TO UBIQUITIN IN COMPLEX WITH REMARK 900 THE NEDD4L HECT DOMAIN REMARK 900 RELATED ID: 1FXT RELATED DB: PDB REMARK 900 E2 ENZYME UBC1 CONJUGATED TO UBIQUITIN REMARK 900 RELATED ID: 2GMI RELATED DB: PDB REMARK 900 E2 ENZYME UBC13 CONJUGATED TO UBIQUITIN IN COMPLEX WITH MMS2 REMARK 900 RELATED ID: 2KJH RELATED DB: PDB REMARK 900 E2 ENZYME UBCH8 CONJUGATED BY A NON-NATIVE DISULFIDE BOND TO REMARK 900 UBIQUITIN(CYS77) DBREF 3UGB A 1 147 UNP P61077 UB2D3_HUMAN 1 147 DBREF 3UGB B 1 76 UNP P0CG48 UBC_HUMAN 1 76 SEQADV 3UGB SER A 85 UNP P61077 CYS 85 ENGINEERED MUTATION SEQRES 1 A 147 MET ALA LEU LYS ARG ILE ASN LYS GLU LEU SER ASP LEU SEQRES 2 A 147 ALA ARG ASP PRO PRO ALA GLN CYS SER ALA GLY PRO VAL SEQRES 3 A 147 GLY ASP ASP MET PHE HIS TRP GLN ALA THR ILE MET GLY SEQRES 4 A 147 PRO ASN ASP SER PRO TYR GLN GLY GLY VAL PHE PHE LEU SEQRES 5 A 147 THR ILE HIS PHE PRO THR ASP TYR PRO PHE LYS PRO PRO SEQRES 6 A 147 LYS VAL ALA PHE THR THR ARG ILE TYR HIS PRO ASN ILE SEQRES 7 A 147 ASN SER ASN GLY SER ILE SER LEU ASP ILE LEU ARG SER SEQRES 8 A 147 GLN TRP SER PRO ALA LEU THR ILE SER LYS VAL LEU LEU SEQRES 9 A 147 SER ILE CYS SER LEU LEU CYS ASP PRO ASN PRO ASP ASP SEQRES 10 A 147 PRO LEU VAL PRO GLU ILE ALA ARG ILE TYR LYS THR ASP SEQRES 11 A 147 ARG ASP LYS TYR ASN ARG ILE SER ARG GLU TRP THR GLN SEQRES 12 A 147 LYS TYR ALA MET SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HET GOL A 201 6 HET GOL A 202 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *128(H2 O) HELIX 1 1 ALA A 2 ASP A 16 1 15 HELIX 2 2 LEU A 86 ARG A 90 5 5 HELIX 3 3 THR A 98 ASP A 112 1 15 HELIX 4 4 VAL A 120 ASP A 130 1 11 HELIX 5 5 ASP A 130 ALA A 146 1 17 HELIX 6 6 THR B 22 GLY B 35 1 14 HELIX 7 7 PRO B 37 GLN B 41 5 5 SHEET 1 A 4 CYS A 21 PRO A 25 0 SHEET 2 A 4 HIS A 32 MET A 38 -1 O GLN A 34 N GLY A 24 SHEET 3 A 4 VAL A 49 HIS A 55 -1 O ILE A 54 N TRP A 33 SHEET 4 A 4 LYS A 66 PHE A 69 -1 O LYS A 66 N HIS A 55 SHEET 1 B 5 THR B 12 GLU B 16 0 SHEET 2 B 5 GLN B 2 LYS B 6 -1 N VAL B 5 O ILE B 13 SHEET 3 B 5 THR B 66 VAL B 70 1 O LEU B 67 N PHE B 4 SHEET 4 B 5 ARG B 42 PHE B 45 -1 N ARG B 42 O VAL B 70 SHEET 5 B 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 LINK OG SER A 85 C GLY B 76 1555 1555 1.43 CISPEP 1 TYR A 60 PRO A 61 0 12.20 SITE 1 AC1 4 HIS A 55 PRO A 57 THR A 58 LYS A 66 SITE 1 AC2 9 PRO A 44 LEU A 110 CYS A 111 PRO A 113 SITE 2 AC2 9 TYR A 127 ARG A 131 TYR A 134 ASN A 135 SITE 3 AC2 9 HOH A 324 CRYST1 42.027 52.510 53.114 90.00 101.07 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023794 0.000000 0.004655 0.00000 SCALE2 0.000000 0.019044 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019184 0.00000