HEADER PROTEIN BINDING/ANTAGONIST 30-JUN-11 3SOV TITLE THE STRUCTURE OF A BETA PROPELLER DOMAIN IN COMPLEX WITH PEPTIDE S COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 20-335; COMPND 5 SYNONYM: LRP-6; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SCLEROSTIN; COMPND 9 CHAIN: Z; COMPND 10 FRAGMENT: UNP RESIDUES 115-121; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: PEPTIDE S SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LRP6; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS BETA PROPELLER, PROTEIN BINDING-ANTAGONIST COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.WANG,E.BOURHIS,Y.ZHANG,L.ROUGE,Y.WU,Y.FRANKE,A.G.COCHRAN REVDAT 3 29-JUL-20 3SOV 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 SITE REVDAT 2 28-AUG-13 3SOV 1 JRNL REVDAT 1 21-SEP-11 3SOV 0 JRNL AUTH E.BOURHIS,W.WANG,C.TAM,J.HWANG,Y.ZHANG,D.SPITTLER,O.W.HUANG, JRNL AUTH 2 Y.GONG,A.ESTEVEZ,I.ZILBERLEYB,L.ROUGE,C.CHIU,Y.WU,M.COSTA, JRNL AUTH 3 R.N.HANNOUSH,Y.FRANKE,A.G.COCHRAN JRNL TITL WNT ANTAGONISTS BIND THROUGH A SHORT PEPTIDE TO THE FIRST JRNL TITL 2 BETA-PROPELLER DOMAIN OF LRP5/6. JRNL REF STRUCTURE V. 19 1433 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21944579 JRNL DOI 10.1016/J.STR.2011.07.005 REMARK 2 REMARK 2 RESOLUTION. 1.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 84804 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 4276 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.7792 - 3.9431 0.97 2758 155 0.1845 0.1882 REMARK 3 2 3.9431 - 3.1313 1.00 2766 143 0.1535 0.1771 REMARK 3 3 3.1313 - 2.7359 1.00 2766 152 0.1548 0.1706 REMARK 3 4 2.7359 - 2.4860 1.00 2786 121 0.1498 0.1581 REMARK 3 5 2.4860 - 2.3079 0.99 2739 143 0.1382 0.1610 REMARK 3 6 2.3079 - 2.1719 1.00 2762 136 0.1319 0.1580 REMARK 3 7 2.1719 - 2.0632 0.99 2697 158 0.1312 0.1520 REMARK 3 8 2.0632 - 1.9734 0.99 2716 141 0.1290 0.1541 REMARK 3 9 1.9734 - 1.8974 0.99 2710 134 0.1239 0.1757 REMARK 3 10 1.8974 - 1.8320 0.99 2743 131 0.1210 0.1317 REMARK 3 11 1.8320 - 1.7747 0.99 2710 129 0.1295 0.1747 REMARK 3 12 1.7747 - 1.7240 0.99 2667 160 0.1267 0.1872 REMARK 3 13 1.7240 - 1.6786 0.98 2711 123 0.1277 0.1819 REMARK 3 14 1.6786 - 1.6377 0.98 2700 140 0.1329 0.1876 REMARK 3 15 1.6377 - 1.6004 0.98 2695 158 0.1348 0.1919 REMARK 3 16 1.6004 - 1.5664 0.98 2672 132 0.1343 0.1756 REMARK 3 17 1.5664 - 1.5351 0.98 2647 158 0.1316 0.1917 REMARK 3 18 1.5351 - 1.5061 0.98 2701 151 0.1379 0.1857 REMARK 3 19 1.5061 - 1.4792 0.98 2634 159 0.1541 0.2049 REMARK 3 20 1.4792 - 1.4541 0.98 2646 137 0.1534 0.2239 REMARK 3 21 1.4541 - 1.4307 0.98 2642 158 0.1581 0.1940 REMARK 3 22 1.4307 - 1.4087 0.97 2651 136 0.1653 0.2316 REMARK 3 23 1.4087 - 1.3879 0.97 2613 146 0.1681 0.2042 REMARK 3 24 1.3879 - 1.3684 0.97 2691 134 0.1896 0.2495 REMARK 3 25 1.3684 - 1.3499 0.97 2626 142 0.2011 0.2507 REMARK 3 26 1.3499 - 1.3324 0.97 2668 153 0.2203 0.2460 REMARK 3 27 1.3324 - 1.3157 0.97 2646 132 0.2322 0.2726 REMARK 3 28 1.3157 - 1.2999 0.97 2621 144 0.2525 0.2695 REMARK 3 29 1.2999 - 1.2847 0.96 2593 150 0.2742 0.3334 REMARK 3 30 1.2847 - 1.2700 0.94 2551 120 0.3068 0.3568 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.47 REMARK 3 B_SOL : 58.48 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.53810 REMARK 3 B22 (A**2) : -0.26150 REMARK 3 B33 (A**2) : 0.44120 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.72990 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 2791 REMARK 3 ANGLE : 1.785 3812 REMARK 3 CHIRALITY : 0.115 423 REMARK 3 PLANARITY : 0.010 491 REMARK 3 DIHEDRAL : 14.916 1038 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SOV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066468. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89480 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.270 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M POTASSIUM THIOCYANATE AND 30% REMARK 280 (W/V) PEG MME 2000, PH 8, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.78350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.54500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.78350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.54500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 930 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 931 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 932 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 GLY A 326 REMARK 465 ASN A 327 REMARK 465 SER A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 465 HIS A 334 REMARK 465 ACE Z 37 REMARK 465 NH2 Z 45 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 81 C1 NAG A 400 1.63 REMARK 500 O6 NAG A 400 C1 FUC A 401 1.74 REMARK 500 ND2 ASN A 281 C1 NAG A 500 1.85 REMARK 500 O4 NAG A 400 C1 FUC A 403 1.86 REMARK 500 O3 NAG A 500 C1 FUC A 501 1.94 REMARK 500 O3 NAG A 400 C1 FUC A 402 2.00 REMARK 500 O HOH A 674 O HOH A 866 2.11 REMARK 500 O HOH A 772 O HOH A 933 2.11 REMARK 500 O HOH A 712 O HOH A 843 2.15 REMARK 500 OD1 ASP A 235 O HOH A 688 2.16 REMARK 500 O HOH A 825 O HOH A 842 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O4 FUC A 403 O HOH A 748 4444 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 120 CD GLU A 120 OE1 0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 270 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 27 27.31 -148.85 REMARK 500 ARG A 28 -61.68 68.18 REMARK 500 ARG A 28 -63.44 68.18 REMARK 500 ASN A 38 48.28 -149.34 REMARK 500 GLU A 51 -60.94 -90.89 REMARK 500 ALA A 54 -65.39 -124.71 REMARK 500 SER A 96 76.63 -152.68 REMARK 500 GLU A 107 67.33 65.62 REMARK 500 ASP A 138 -60.83 -126.14 REMARK 500 ARG A 141 -91.23 -140.24 REMARK 500 SER A 172 69.01 36.91 REMARK 500 TYR A 182 -57.10 -152.03 REMARK 500 ASN A 204 34.82 70.69 REMARK 500 VAL A 219 -63.07 -109.12 REMARK 500 HIS A 226 71.84 -161.08 REMARK 500 GLU A 234 -125.21 58.11 REMARK 500 GLU A 234 -127.04 58.11 REMARK 500 SER A 267 78.91 -158.75 REMARK 500 MET A 269 -126.81 -128.76 REMARK 500 HIS A 295 -100.90 -124.29 REMARK 500 PHE A 305 13.80 80.51 REMARK 500 LYS A 321 -39.19 -130.74 REMARK 500 ASN Z 40 -9.79 73.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 400 REMARK 610 FUC A 401 REMARK 610 FUC A 402 REMARK 610 FUC A 403 REMARK 610 NAG A 500 REMARK 610 FUC A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SOB RELATED DB: PDB REMARK 900 RELATED ID: 3SOQ RELATED DB: PDB DBREF 3SOV A 20 326 UNP O75581 LRP6_HUMAN 20 326 DBREF 3SOV Z 38 44 UNP Q9BQB4 SOST_HUMAN 115 121 SEQADV 3SOV ALA A 17 UNP O75581 EXPRESSION TAG SEQADV 3SOV GLY A 18 UNP O75581 EXPRESSION TAG SEQADV 3SOV SER A 19 UNP O75581 EXPRESSION TAG SEQADV 3SOV ASN A 327 UNP O75581 EXPRESSION TAG SEQADV 3SOV SER A 328 UNP O75581 EXPRESSION TAG SEQADV 3SOV HIS A 329 UNP O75581 EXPRESSION TAG SEQADV 3SOV HIS A 330 UNP O75581 EXPRESSION TAG SEQADV 3SOV HIS A 331 UNP O75581 EXPRESSION TAG SEQADV 3SOV HIS A 332 UNP O75581 EXPRESSION TAG SEQADV 3SOV HIS A 333 UNP O75581 EXPRESSION TAG SEQADV 3SOV HIS A 334 UNP O75581 EXPRESSION TAG SEQADV 3SOV ACE Z 37 UNP Q9BQB4 ACETYLATION SEQADV 3SOV NH2 Z 45 UNP Q9BQB4 AMIDATION SEQRES 1 A 318 ALA GLY SER ALA PRO LEU LEU LEU TYR ALA ASN ARG ARG SEQRES 2 A 318 ASP LEU ARG LEU VAL ASP ALA THR ASN GLY LYS GLU ASN SEQRES 3 A 318 ALA THR ILE VAL VAL GLY GLY LEU GLU ASP ALA ALA ALA SEQRES 4 A 318 VAL ASP PHE VAL PHE SER HIS GLY LEU ILE TYR TRP SER SEQRES 5 A 318 ASP VAL SER GLU GLU ALA ILE LYS ARG THR GLU PHE ASN SEQRES 6 A 318 LYS THR GLU SER VAL GLN ASN VAL VAL VAL SER GLY LEU SEQRES 7 A 318 LEU SER PRO ASP GLY LEU ALA CYS ASP TRP LEU GLY GLU SEQRES 8 A 318 LYS LEU TYR TRP THR ASP SER GLU THR ASN ARG ILE GLU SEQRES 9 A 318 VAL SER ASN LEU ASP GLY SER LEU ARG LYS VAL LEU PHE SEQRES 10 A 318 TRP GLN GLU LEU ASP GLN PRO ARG ALA ILE ALA LEU ASP SEQRES 11 A 318 PRO SER SER GLY PHE MET TYR TRP THR ASP TRP GLY GLU SEQRES 12 A 318 VAL PRO LYS ILE GLU ARG ALA GLY MET ASP GLY SER SER SEQRES 13 A 318 ARG PHE ILE ILE ILE ASN SER GLU ILE TYR TRP PRO ASN SEQRES 14 A 318 GLY LEU THR LEU ASP TYR GLU GLU GLN LYS LEU TYR TRP SEQRES 15 A 318 ALA ASP ALA LYS LEU ASN PHE ILE HIS LYS SER ASN LEU SEQRES 16 A 318 ASP GLY THR ASN ARG GLN ALA VAL VAL LYS GLY SER LEU SEQRES 17 A 318 PRO HIS PRO PHE ALA LEU THR LEU PHE GLU ASP ILE LEU SEQRES 18 A 318 TYR TRP THR ASP TRP SER THR HIS SER ILE LEU ALA CYS SEQRES 19 A 318 ASN LYS TYR THR GLY GLU GLY LEU ARG GLU ILE HIS SER SEQRES 20 A 318 ASP ILE PHE SER PRO MET ASP ILE HIS ALA PHE SER GLN SEQRES 21 A 318 GLN ARG GLN PRO ASN ALA THR ASN PRO CYS GLY ILE ASP SEQRES 22 A 318 ASN GLY GLY CYS SER HIS LEU CYS LEU MET SER PRO VAL SEQRES 23 A 318 LYS PRO PHE TYR GLN CYS ALA CYS PRO THR GLY VAL LYS SEQRES 24 A 318 LEU LEU GLU ASN GLY LYS THR CYS LYS ASP GLY ASN SER SEQRES 25 A 318 HIS HIS HIS HIS HIS HIS SEQRES 1 Z 9 ACE LEU PRO ASN ALA ILE GLY ARG NH2 HET NAG A 400 14 HET FUC A 401 10 HET FUC A 402 10 HET FUC A 403 10 HET NAG A 500 14 HET FUC A 501 10 HET GOL A 336 6 HET GOL A 337 6 HET GOL A 338 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 FUC 4(C6 H12 O5) FORMUL 9 GOL 3(C3 H8 O3) FORMUL 12 HOH *339(H2 O) HELIX 1 1 PHE A 60 HIS A 62 5 3 HELIX 2 2 PRO A 147 SER A 149 5 3 HELIX 3 3 SER A 275 GLN A 279 5 5 HELIX 4 4 ASP A 289 CYS A 293 5 5 SHEET 1 A 7 ASN A 88 SER A 92 0 SHEET 2 A 7 ALA A 74 GLU A 79 -1 N ILE A 75 O VAL A 90 SHEET 3 A 7 LEU A 64 ASP A 69 -1 N TRP A 67 O LYS A 76 SHEET 4 A 7 THR A 44 VAL A 59 -1 N ASP A 57 O TYR A 66 SHEET 5 A 7 ARG A 28 ASP A 35 -1 N LEU A 33 O THR A 44 SHEET 6 A 7 LEU A 22 ALA A 26 -1 N TYR A 25 O ARG A 32 SHEET 7 A 7 ILE A 271 PHE A 274 -1 O HIS A 272 N LEU A 24 SHEET 1 B 4 GLY A 99 ASP A 103 0 SHEET 2 B 4 LYS A 108 ASP A 113 -1 O LYS A 108 N ASP A 103 SHEET 3 B 4 ARG A 118 ASN A 123 -1 O SER A 122 N LEU A 109 SHEET 4 B 4 LYS A 130 PHE A 133 -1 O LYS A 130 N VAL A 121 SHEET 1 C 4 PRO A 140 ASP A 146 0 SHEET 2 C 4 PHE A 151 ASP A 156 -1 O PHE A 151 N ASP A 146 SHEET 3 C 4 LYS A 162 GLY A 167 -1 O ALA A 166 N MET A 152 SHEET 4 C 4 PHE A 174 ILE A 177 -1 O PHE A 174 N ARG A 165 SHEET 1 D 4 PRO A 184 ASP A 190 0 SHEET 2 D 4 LYS A 195 ASP A 200 -1 O TYR A 197 N THR A 188 SHEET 3 D 4 PHE A 205 ASN A 210 -1 O SER A 209 N LEU A 196 SHEET 4 D 4 GLN A 217 VAL A 220 -1 O GLN A 217 N LYS A 208 SHEET 1 E 4 PRO A 227 PHE A 233 0 SHEET 2 E 4 ILE A 236 ASP A 241 -1 O TYR A 238 N THR A 231 SHEET 3 E 4 SER A 246 ASN A 251 -1 O CYS A 250 N LEU A 237 SHEET 4 E 4 ARG A 259 HIS A 262 -1 O ILE A 261 N ILE A 247 SHEET 1 F 2 LEU A 296 MET A 299 0 SHEET 2 F 2 TYR A 306 ALA A 309 -1 O ALA A 309 N LEU A 296 SSBOND 1 CYS A 286 CYS A 297 1555 1555 2.04 SSBOND 2 CYS A 293 CYS A 308 1555 1555 2.09 SSBOND 3 CYS A 310 CYS A 323 1555 1555 2.08 CISPEP 1 LYS A 303 PRO A 304 0 9.35 CRYST1 103.567 47.090 68.720 90.00 97.68 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009656 0.000000 0.001302 0.00000 SCALE2 0.000000 0.021236 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014684 0.00000