HEADER TRANSFERASE/TRANSFERASE INHIBITOR 12-APR-11 3RI1 TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF FGFR2 KINASE IN COMPLEX TITLE 2 WITH ARQ 069 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBROBLAST GROWTH FACTOR RECEPTOR 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 458-768; COMPND 5 SYNONYM: FGFR-2, K-SAM, KERATINOCYTE GROWTH FACTOR RECEPTOR; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FGFR2, BEK, KGFR, KSAM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: CODON PLUS BL21(DE3)-RILP; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS FGFR1 KINASE, FGFR2 KINASE, INACTIVE CONFORMATION, KINASE-INHIBITOR KEYWDS 2 COMPLEX, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.EATHIRAJ,R.PALMA,M.HIRSCHI,E.VOLCKOVA,E.NAKUCI,J.CASTRO,C.R.CHEN, AUTHOR 2 T.C.CHAN,D.S.FRANCE,M.A.ASHWELL REVDAT 2 19-OCT-11 3RI1 1 JRNL VERSN REVDAT 1 04-MAY-11 3RI1 0 JRNL AUTH S.EATHIRAJ,R.PALMA,M.HIRSCHI,E.VOLCKOVA,E.NAKUCI,J.CASTRO, JRNL AUTH 2 C.R.CHEN,T.C.CHAN,D.S.FRANCE,M.A.ASHWELL JRNL TITL A NOVEL MODE OF PROTEIN KINASE INHIBITION EXPLOITING JRNL TITL 2 HYDROPHOBIC MOTIFS OF AUTOINHIBITED KINASES: DISCOVERY OF JRNL TITL 3 ATP-INDEPENDENT INHIBITORS OF FIBROBLAST GROWTH FACTOR JRNL TITL 4 RECEPTOR. JRNL REF J.BIOL.CHEM. V. 286 20677 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21454610 JRNL DOI 10.1074/JBC.M110.213736 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 44033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2356 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3007 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4469 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 87 REMARK 3 SOLVENT ATOMS : 412 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.75000 REMARK 3 B22 (A**2) : -0.15000 REMARK 3 B33 (A**2) : 0.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.567 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4652 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6311 ; 1.008 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 563 ; 5.185 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;34.265 ;24.129 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 800 ;13.803 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;16.939 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 691 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3476 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2234 ; 0.167 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3171 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 321 ; 0.127 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.159 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.093 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2939 ; 0.549 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4562 ; 0.916 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1995 ; 1.232 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1749 ; 1.931 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3RI1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-11. REMARK 100 THE RCSB ID CODE IS RCSB064955. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : SI(III) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46498 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% POLYETHYLENE GLYCOL 4000 AND 0.3M REMARK 280 LITHIUM SULFATE AND 100 MM HEPES, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 52.89700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.79050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.89700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.79050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 456 REMARK 465 SER A 457 REMARK 465 PRO A 458 REMARK 465 MET A 459 REMARK 465 LEU A 460 REMARK 465 ALA A 461 REMARK 465 GLY A 462 REMARK 465 VAL A 463 REMARK 465 SER A 464 REMARK 465 GLU A 465 REMARK 465 TYR A 466 REMARK 465 GLU A 467 REMARK 465 GLY A 583 REMARK 465 MET A 584 REMARK 465 GLU A 585 REMARK 465 TYR A 586 REMARK 465 SER A 587 REMARK 465 TYR A 588 REMARK 465 ASP A 589 REMARK 465 ILE A 590 REMARK 465 ASN A 591 REMARK 465 ARG A 592 REMARK 465 VAL A 593 REMARK 465 PRO A 594 REMARK 465 GLU A 595 REMARK 465 ASN A 766 REMARK 465 GLU A 767 REMARK 465 GLU A 768 REMARK 465 GLY B 456 REMARK 465 SER B 457 REMARK 465 PRO B 458 REMARK 465 MET B 459 REMARK 465 LEU B 460 REMARK 465 ALA B 461 REMARK 465 GLY B 462 REMARK 465 VAL B 463 REMARK 465 SER B 464 REMARK 465 GLU B 465 REMARK 465 TYR B 466 REMARK 465 GLU B 467 REMARK 465 LYS B 505 REMARK 465 ASP B 506 REMARK 465 LYS B 507 REMARK 465 GLY B 583 REMARK 465 MET B 584 REMARK 465 GLU B 585 REMARK 465 TYR B 586 REMARK 465 SER B 587 REMARK 465 TYR B 588 REMARK 465 ASP B 589 REMARK 465 ILE B 590 REMARK 465 ASN B 591 REMARK 465 ARG B 592 REMARK 465 VAL B 593 REMARK 465 PRO B 594 REMARK 465 GLU B 595 REMARK 465 GLU B 767 REMARK 465 GLU B 768 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 485 CG CD CE NZ REMARK 470 GLU A 489 CG CD OE1 OE2 REMARK 470 LYS A 505 CG CD CE NZ REMARK 470 LYS A 509 CG CD CE NZ REMARK 470 GLU A 510 CG CD OE1 OE2 REMARK 470 LYS A 526 CG CD CE NZ REMARK 470 LYS A 543 CG CD CE NZ REMARK 470 LYS A 545 CG CD CE NZ REMARK 470 LYS A 717 CG CD CE NZ REMARK 470 THR A 765 OG1 CG2 REMARK 470 LYS B 480 CG CD CE NZ REMARK 470 LYS B 485 CG CD CE NZ REMARK 470 GLU B 489 CG CD OE1 OE2 REMARK 470 PRO B 508 CG CD REMARK 470 LYS B 509 CG CD CE NZ REMARK 470 LYS B 545 CG CD CE NZ REMARK 470 GLU B 596 CG CD OE1 OE2 REMARK 470 LYS B 621 CG CD CE NZ REMARK 470 ASN B 727 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 695 CD GLU A 695 OE1 -0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 625 -5.16 74.58 REMARK 500 ASP A 626 41.45 -140.70 REMARK 500 ASP A 644 75.33 54.24 REMARK 500 PHE A 645 30.48 -95.71 REMARK 500 ASN A 653 49.02 -104.87 REMARK 500 ASN A 727 44.77 -88.93 REMARK 500 ARG B 625 -13.30 72.66 REMARK 500 ALA B 643 -168.18 -125.05 REMARK 500 ASP B 644 79.48 44.80 REMARK 500 ASN B 653 52.56 -97.87 REMARK 500 TYR B 657 -8.27 79.45 REMARK 500 CYS B 728 134.14 -171.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 376 DISTANCE = 5.11 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3RH A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3RH B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 769 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 5 DBREF 3RI1 A 458 768 UNP P21802 FGFR2_HUMAN 458 768 DBREF 3RI1 B 458 768 UNP P21802 FGFR2_HUMAN 458 768 SEQADV 3RI1 GLY A 456 UNP P21802 EXPRESSION TAG SEQADV 3RI1 SER A 457 UNP P21802 EXPRESSION TAG SEQADV 3RI1 GLY B 456 UNP P21802 EXPRESSION TAG SEQADV 3RI1 SER B 457 UNP P21802 EXPRESSION TAG SEQRES 1 A 313 GLY SER PRO MET LEU ALA GLY VAL SER GLU TYR GLU LEU SEQRES 2 A 313 PRO GLU ASP PRO LYS TRP GLU PHE PRO ARG ASP LYS LEU SEQRES 3 A 313 THR LEU GLY LYS PRO LEU GLY GLU GLY CYS PHE GLY GLN SEQRES 4 A 313 VAL VAL MET ALA GLU ALA VAL GLY ILE ASP LYS ASP LYS SEQRES 5 A 313 PRO LYS GLU ALA VAL THR VAL ALA VAL LYS MET LEU LYS SEQRES 6 A 313 ASP ASP ALA THR GLU LYS ASP LEU SER ASP LEU VAL SER SEQRES 7 A 313 GLU MET GLU MET MET LYS MET ILE GLY LYS HIS LYS ASN SEQRES 8 A 313 ILE ILE ASN LEU LEU GLY ALA CYS THR GLN ASP GLY PRO SEQRES 9 A 313 LEU TYR VAL ILE VAL GLU TYR ALA SER LYS GLY ASN LEU SEQRES 10 A 313 ARG GLU TYR LEU ARG ALA ARG ARG PRO PRO GLY MET GLU SEQRES 11 A 313 TYR SER TYR ASP ILE ASN ARG VAL PRO GLU GLU GLN MET SEQRES 12 A 313 THR PHE LYS ASP LEU VAL SER CYS THR TYR GLN LEU ALA SEQRES 13 A 313 ARG GLY MET GLU TYR LEU ALA SER GLN LYS CYS ILE HIS SEQRES 14 A 313 ARG ASP LEU ALA ALA ARG ASN VAL LEU VAL THR GLU ASN SEQRES 15 A 313 ASN VAL MET LYS ILE ALA ASP PHE GLY LEU ALA ARG ASP SEQRES 16 A 313 ILE ASN ASN ILE ASP TYR TYR LYS LYS THR THR ASN GLY SEQRES 17 A 313 ARG LEU PRO VAL LYS TRP MET ALA PRO GLU ALA LEU PHE SEQRES 18 A 313 ASP ARG VAL TYR THR HIS GLN SER ASP VAL TRP SER PHE SEQRES 19 A 313 GLY VAL LEU MET TRP GLU ILE PHE THR LEU GLY GLY SER SEQRES 20 A 313 PRO TYR PRO GLY ILE PRO VAL GLU GLU LEU PHE LYS LEU SEQRES 21 A 313 LEU LYS GLU GLY HIS ARG MET ASP LYS PRO ALA ASN CYS SEQRES 22 A 313 THR ASN GLU LEU TYR MET MET MET ARG ASP CYS TRP HIS SEQRES 23 A 313 ALA VAL PRO SER GLN ARG PRO THR PHE LYS GLN LEU VAL SEQRES 24 A 313 GLU ASP LEU ASP ARG ILE LEU THR LEU THR THR ASN GLU SEQRES 25 A 313 GLU SEQRES 1 B 313 GLY SER PRO MET LEU ALA GLY VAL SER GLU TYR GLU LEU SEQRES 2 B 313 PRO GLU ASP PRO LYS TRP GLU PHE PRO ARG ASP LYS LEU SEQRES 3 B 313 THR LEU GLY LYS PRO LEU GLY GLU GLY CYS PHE GLY GLN SEQRES 4 B 313 VAL VAL MET ALA GLU ALA VAL GLY ILE ASP LYS ASP LYS SEQRES 5 B 313 PRO LYS GLU ALA VAL THR VAL ALA VAL LYS MET LEU LYS SEQRES 6 B 313 ASP ASP ALA THR GLU LYS ASP LEU SER ASP LEU VAL SER SEQRES 7 B 313 GLU MET GLU MET MET LYS MET ILE GLY LYS HIS LYS ASN SEQRES 8 B 313 ILE ILE ASN LEU LEU GLY ALA CYS THR GLN ASP GLY PRO SEQRES 9 B 313 LEU TYR VAL ILE VAL GLU TYR ALA SER LYS GLY ASN LEU SEQRES 10 B 313 ARG GLU TYR LEU ARG ALA ARG ARG PRO PRO GLY MET GLU SEQRES 11 B 313 TYR SER TYR ASP ILE ASN ARG VAL PRO GLU GLU GLN MET SEQRES 12 B 313 THR PHE LYS ASP LEU VAL SER CYS THR TYR GLN LEU ALA SEQRES 13 B 313 ARG GLY MET GLU TYR LEU ALA SER GLN LYS CYS ILE HIS SEQRES 14 B 313 ARG ASP LEU ALA ALA ARG ASN VAL LEU VAL THR GLU ASN SEQRES 15 B 313 ASN VAL MET LYS ILE ALA ASP PHE GLY LEU ALA ARG ASP SEQRES 16 B 313 ILE ASN ASN ILE ASP TYR TYR LYS LYS THR THR ASN GLY SEQRES 17 B 313 ARG LEU PRO VAL LYS TRP MET ALA PRO GLU ALA LEU PHE SEQRES 18 B 313 ASP ARG VAL TYR THR HIS GLN SER ASP VAL TRP SER PHE SEQRES 19 B 313 GLY VAL LEU MET TRP GLU ILE PHE THR LEU GLY GLY SER SEQRES 20 B 313 PRO TYR PRO GLY ILE PRO VAL GLU GLU LEU PHE LYS LEU SEQRES 21 B 313 LEU LYS GLU GLY HIS ARG MET ASP LYS PRO ALA ASN CYS SEQRES 22 B 313 THR ASN GLU LEU TYR MET MET MET ARG ASP CYS TRP HIS SEQRES 23 B 313 ALA VAL PRO SER GLN ARG PRO THR PHE LYS GLN LEU VAL SEQRES 24 B 313 GLU ASP LEU ASP ARG ILE LEU THR LEU THR THR ASN GLU SEQRES 25 B 313 GLU HET 3RH A 2 21 HET SO4 A 3 5 HET SO4 A 7 5 HET SO4 A 4 5 HET SO4 A 11 5 HET SO4 A 6 5 HET 3RH B 1 21 HET SO4 B 9 5 HET SO4 B 8 5 HET SO4 B 769 5 HET SO4 B 5 5 HETNAM 3RH (6S)-6-PHENYL-5,6-DIHYDROBENZO[H]QUINAZOLIN-2-AMINE HETNAM SO4 SULFATE ION FORMUL 3 3RH 2(C18 H15 N3) FORMUL 4 SO4 9(O4 S 2-) FORMUL 14 HOH *412(H2 O) HELIX 1 1 PRO A 477 ASP A 479 5 3 HELIX 2 2 THR A 524 ILE A 541 1 18 HELIX 3 3 ASN A 571 ARG A 579 1 9 HELIX 4 4 THR A 599 GLN A 620 1 22 HELIX 5 5 ALA A 628 ARG A 630 5 3 HELIX 6 6 PRO A 666 MET A 670 5 5 HELIX 7 7 ALA A 671 ASP A 677 1 7 HELIX 8 8 THR A 681 THR A 698 1 18 HELIX 9 9 PRO A 708 GLU A 718 1 11 HELIX 10 10 THR A 729 TRP A 740 1 12 HELIX 11 11 VAL A 743 ARG A 747 5 5 HELIX 12 12 THR A 749 THR A 765 1 17 HELIX 13 13 PRO B 477 ASP B 479 5 3 HELIX 14 14 THR B 524 ILE B 541 1 18 HELIX 15 15 ASN B 571 ALA B 578 1 8 HELIX 16 16 THR B 599 GLN B 620 1 22 HELIX 17 17 ALA B 628 ARG B 630 5 3 HELIX 18 18 PRO B 666 MET B 670 5 5 HELIX 19 19 ALA B 671 ASP B 677 1 7 HELIX 20 20 THR B 681 THR B 698 1 18 HELIX 21 21 PRO B 708 GLU B 710 5 3 HELIX 22 22 GLU B 711 GLU B 718 1 8 HELIX 23 23 THR B 729 TRP B 740 1 12 HELIX 24 24 VAL B 743 ARG B 747 5 5 HELIX 25 25 THR B 749 ASN B 766 1 18 SHEET 1 A 5 LEU A 481 LEU A 487 0 SHEET 2 A 5 GLN A 494 VAL A 501 -1 O VAL A 495 N LEU A 487 SHEET 3 A 5 ALA A 511 MET A 518 -1 O VAL A 516 N VAL A 496 SHEET 4 A 5 TYR A 561 GLU A 565 -1 O VAL A 564 N ALA A 515 SHEET 5 A 5 LEU A 550 CYS A 554 -1 N LEU A 551 O ILE A 563 SHEET 1 B 2 CYS A 622 ILE A 623 0 SHEET 2 B 2 ARG A 649 ASP A 650 -1 O ARG A 649 N ILE A 623 SHEET 1 C 2 VAL A 632 VAL A 634 0 SHEET 2 C 2 MET A 640 ILE A 642 -1 O LYS A 641 N LEU A 633 SHEET 1 D 5 LEU B 481 LEU B 487 0 SHEET 2 D 5 GLN B 494 VAL B 501 -1 O MET B 497 N GLY B 484 SHEET 3 D 5 ALA B 511 MET B 518 -1 O VAL B 512 N ALA B 500 SHEET 4 D 5 TYR B 561 GLU B 565 -1 O VAL B 564 N ALA B 515 SHEET 5 D 5 LEU B 550 CYS B 554 -1 N LEU B 551 O ILE B 563 SHEET 1 E 2 CYS B 622 ILE B 623 0 SHEET 2 E 2 ARG B 649 ASP B 650 -1 O ARG B 649 N ILE B 623 SHEET 1 F 2 VAL B 632 VAL B 634 0 SHEET 2 F 2 MET B 640 ILE B 642 -1 O LYS B 641 N LEU B 633 SSBOND 1 CYS A 491 CYS B 491 1555 1555 2.89 SITE 1 AC1 10 SO4 A 6 HOH A 229 HOH A 324 VAL A 495 SITE 2 AC1 10 ALA A 515 GLU A 534 VAL A 564 GLU A 565 SITE 3 AC1 10 ALA A 567 LEU A 633 SITE 1 AC2 4 HOH A 308 THR A 635 ASN A 637 VAL A 639 SITE 1 AC3 9 HOH A 194 HOH A 215 ARG A 625 ARG A 649 SITE 2 AC3 9 THR A 660 THR A 661 ASN A 662 GLY A 663 SITE 3 AC3 9 ARG A 664 SITE 1 AC4 5 HOH A 127 THR A 681 HIS A 682 GLN A 683 SITE 2 AC4 5 ARG B 612 SITE 1 AC5 4 HOH A 58 ARG A 580 GLY A 701 SER A 702 SITE 1 AC6 10 3RH A 2 HOH A 145 HOH A 172 HOH A 286 SITE 2 AC6 10 HOH A 309 GLU A 489 GLY A 490 CYS A 491 SITE 3 AC6 10 PHE A 492 GLY A 493 SITE 1 AC7 10 HOH B 326 HOH B 419 VAL B 495 ALA B 515 SITE 2 AC7 10 LYS B 517 VAL B 564 GLU B 565 ALA B 567 SITE 3 AC7 10 LEU B 633 SO4 B 769 SITE 1 AC8 4 HOH A 76 HOH B 226 VAL B 709 GLU B 710 SITE 1 AC9 7 HOH B 213 HOH B 330 ARG B 625 THR B 660 SITE 2 AC9 7 ASN B 662 GLY B 663 ARG B 664 SITE 1 BC1 7 3RH B 1 HOH B 416 GLU B 489 GLY B 490 SITE 2 BC1 7 CYS B 491 PHE B 492 GLY B 493 SITE 1 BC2 7 HOH B 137 HOH B 205 ARG B 577 ARG B 580 SITE 2 BC2 7 GLY B 700 GLY B 701 SER B 702 CRYST1 105.794 119.581 63.311 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009452 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008363 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015795 0.00000