HEADER SIGNALING PROTEIN 05-JAN-11 3Q7P TITLE CRYSTAL STRUCTURE OF RAD G-DOMAIN-GTP ANALOG COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING PROTEIN RAD; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: G-DOMAIN, RESIDUES 90-255; COMPND 5 SYNONYM: RAD1, RAS ASSOCIATED WITH DIABETES; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RRAD, RAD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21D KEYWDS G-DOMAIN, G-PROTEIN, CAV2 BETA, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.SASSON,L.NAVON-PERRY,J.A.HIRSCH REVDAT 2 26-OCT-11 3Q7P 1 JRNL REVDAT 1 21-SEP-11 3Q7P 0 JRNL AUTH Y.SASSON,L.NAVON-PERRY,D.HUPPERT,J.A.HIRSCH JRNL TITL RGK FAMILY G-DOMAIN:GTP ANALOG COMPLEX STRUCTURES AND JRNL TITL 2 NUCLEOTIDE-BINDING PROPERTIES. JRNL REF J.MOL.BIOL. V. 413 372 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21903096 JRNL DOI 10.1016/J.JMB.2011.08.017 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 8043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 406 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 502 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 24 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2223 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.05000 REMARK 3 B22 (A**2) : 1.05000 REMARK 3 B33 (A**2) : -1.57000 REMARK 3 B12 (A**2) : 0.52000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.365 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.305 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.832 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2317 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3134 ; 0.849 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 278 ; 7.359 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;33.933 ;22.079 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 395 ;22.110 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;22.446 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 360 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1684 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1118 ; 0.233 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1555 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 121 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.171 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 76 ; 0.267 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.330 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1406 ; 1.142 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2251 ; 1.981 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 911 ; 1.199 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 883 ; 1.919 ; 3.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3Q7P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-11. REMARK 100 THE RCSB ID CODE IS RCSB063298. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8487 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB:2DPX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 400, 5% ETHYLENE GLYCOL 0.1M REMARK 280 MES, 0.2M CALCIUM ACETATE,, PH 5.7, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.15200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 102.30400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 114 REMARK 465 GLU A 115 REMARK 465 ASP A 116 REMARK 465 GLY A 117 REMARK 465 PRO A 118 REMARK 465 GLU A 119 REMARK 465 ALA A 120 REMARK 465 GLU A 121 REMARK 465 ALA A 122 REMARK 465 ALA A 123 REMARK 465 GLY A 124 REMARK 465 GLN A 148 REMARK 465 ASP A 149 REMARK 465 GLY A 150 REMARK 465 GLY A 151 REMARK 465 ARG A 152 REMARK 465 TRP A 153 REMARK 465 LEU A 154 REMARK 465 PRO A 155 REMARK 465 GLY A 156 REMARK 465 HIS A 157 REMARK 465 GLN A 192 REMARK 465 THR A 193 REMARK 465 ASP A 194 REMARK 465 ASP B 116 REMARK 465 GLY B 117 REMARK 465 PRO B 118 REMARK 465 GLU B 119 REMARK 465 ALA B 120 REMARK 465 GLU B 121 REMARK 465 ALA B 122 REMARK 465 ALA B 123 REMARK 465 GLY B 124 REMARK 465 GLN B 148 REMARK 465 ASP B 149 REMARK 465 GLY B 150 REMARK 465 GLY B 151 REMARK 465 ARG B 152 REMARK 465 TRP B 153 REMARK 465 LEU B 154 REMARK 465 PRO B 155 REMARK 465 GLY B 156 REMARK 465 HIS B 157 REMARK 465 CYS B 158 REMARK 465 MET B 159 REMARK 465 GLN B 192 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 137 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 105 MG MG A 257 1.62 REMARK 500 O3G GNP A 256 MG MG A 257 1.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 129 142.81 174.04 REMARK 500 ASP A 134 73.13 36.66 REMARK 500 GLU A 137 -168.25 -62.78 REMARK 500 ALA A 138 125.49 167.39 REMARK 500 MET A 159 -131.23 48.34 REMARK 500 ALA A 190 -78.85 -45.86 REMARK 500 LYS A 204 34.71 74.69 REMARK 500 CYS A 221 -33.52 -170.79 REMARK 500 ARG A 254 71.06 -109.41 REMARK 500 TRP B 146 21.25 -74.75 REMARK 500 ALA B 190 -85.65 -78.88 REMARK 500 LYS B 204 40.62 76.72 REMARK 500 CYS B 221 -40.07 -175.15 REMARK 500 ASP B 226 67.63 38.08 REMARK 500 ARG B 254 66.82 -116.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 19 DISTANCE = 5.28 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 257 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 28 O REMARK 620 2 GLU A 147 OE2 111.3 REMARK 620 3 HOH A 29 O 163.8 83.5 REMARK 620 4 GNP A 256 O2B 89.5 158.7 75.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 257 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 105 OG REMARK 620 2 GNP B 256 O3G 154.5 REMARK 620 3 HOH B 30 O 84.9 84.4 REMARK 620 4 GNP B 256 O2B 80.7 76.3 90.2 REMARK 620 5 HOH B 31 O 83.0 102.1 163.6 76.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP B 256 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 256 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 257 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DPX RELATED DB: PDB REMARK 900 RELATED ID: 3Q72 RELATED DB: PDB REMARK 900 RELATED ID: 3Q7Q RELATED DB: PDB DBREF 3Q7P A 90 255 UNP P55042 RAD_HUMAN 90 255 DBREF 3Q7P B 90 255 UNP P55042 RAD_HUMAN 90 255 SEQRES 1 A 166 SER VAL TYR LYS VAL LEU LEU LEU GLY ALA PRO GLY VAL SEQRES 2 A 166 GLY LYS SER ALA LEU ALA ARG ILE PHE GLY GLY VAL GLU SEQRES 3 A 166 ASP GLY PRO GLU ALA GLU ALA ALA GLY HIS THR TYR ASP SEQRES 4 A 166 ARG SER ILE VAL VAL ASP GLY GLU GLU ALA SER LEU MET SEQRES 5 A 166 VAL TYR ASP ILE TRP GLU GLN ASP GLY GLY ARG TRP LEU SEQRES 6 A 166 PRO GLY HIS CYS MET ALA MET GLY ASP ALA TYR VAL ILE SEQRES 7 A 166 VAL TYR SER VAL THR ASP LYS GLY SER PHE GLU LYS ALA SEQRES 8 A 166 SER GLU LEU ARG VAL GLN LEU ARG ARG ALA ARG GLN THR SEQRES 9 A 166 ASP ASP VAL PRO ILE ILE LEU VAL GLY ASN LYS SER ASP SEQRES 10 A 166 LEU VAL ARG SER ARG GLU VAL SER VAL ASP GLU GLY ARG SEQRES 11 A 166 ALA CYS ALA VAL VAL PHE ASP CYS LYS PHE ILE GLU THR SEQRES 12 A 166 SER ALA ALA LEU HIS HIS ASN VAL GLN ALA LEU PHE GLU SEQRES 13 A 166 GLY VAL VAL ARG GLN ILE ARG LEU ARG ARG SEQRES 1 B 166 SER VAL TYR LYS VAL LEU LEU LEU GLY ALA PRO GLY VAL SEQRES 2 B 166 GLY LYS SER ALA LEU ALA ARG ILE PHE GLY GLY VAL GLU SEQRES 3 B 166 ASP GLY PRO GLU ALA GLU ALA ALA GLY HIS THR TYR ASP SEQRES 4 B 166 ARG SER ILE VAL VAL ASP GLY GLU GLU ALA SER LEU MET SEQRES 5 B 166 VAL TYR ASP ILE TRP GLU GLN ASP GLY GLY ARG TRP LEU SEQRES 6 B 166 PRO GLY HIS CYS MET ALA MET GLY ASP ALA TYR VAL ILE SEQRES 7 B 166 VAL TYR SER VAL THR ASP LYS GLY SER PHE GLU LYS ALA SEQRES 8 B 166 SER GLU LEU ARG VAL GLN LEU ARG ARG ALA ARG GLN THR SEQRES 9 B 166 ASP ASP VAL PRO ILE ILE LEU VAL GLY ASN LYS SER ASP SEQRES 10 B 166 LEU VAL ARG SER ARG GLU VAL SER VAL ASP GLU GLY ARG SEQRES 11 B 166 ALA CYS ALA VAL VAL PHE ASP CYS LYS PHE ILE GLU THR SEQRES 12 B 166 SER ALA ALA LEU HIS HIS ASN VAL GLN ALA LEU PHE GLU SEQRES 13 B 166 GLY VAL VAL ARG GLN ILE ARG LEU ARG ARG HET GNP A 256 32 HET MG A 257 1 HET GNP B 256 32 HET MG B 257 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 3 GNP 2(C10 H17 N6 O13 P3) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *31(H2 O) HELIX 1 1 GLY A 103 GLY A 112 1 10 HELIX 2 2 ASP A 173 ARG A 191 1 19 HELIX 3 3 SER A 214 VAL A 223 1 10 HELIX 4 4 SER A 233 HIS A 237 5 5 HELIX 5 5 ASN A 239 ARG A 254 1 16 HELIX 6 6 GLY B 103 GLY B 112 1 10 HELIX 7 7 ASP B 173 ARG B 191 1 19 HELIX 8 8 SER B 214 VAL B 223 1 10 HELIX 9 9 SER B 233 HIS B 237 5 5 HELIX 10 10 ASN B 239 ARG B 254 1 16 SHEET 1 A 6 THR A 126 SER A 130 0 SHEET 2 A 6 SER A 139 TYR A 143 -1 O VAL A 142 N TYR A 127 SHEET 3 A 6 VAL A 91 LEU A 97 1 N VAL A 94 O TYR A 143 SHEET 4 A 6 ALA A 164 SER A 170 1 O VAL A 166 N LEU A 97 SHEET 5 A 6 ILE A 198 ASN A 203 1 O VAL A 201 N ILE A 167 SHEET 6 A 6 LYS A 228 GLU A 231 1 O LYS A 228 N LEU A 200 SHEET 1 B 6 THR B 126 VAL B 133 0 SHEET 2 B 6 GLU B 136 ASP B 144 -1 O VAL B 142 N TYR B 127 SHEET 3 B 6 VAL B 91 GLY B 98 1 N VAL B 94 O TYR B 143 SHEET 4 B 6 ALA B 164 SER B 170 1 O VAL B 168 N LEU B 97 SHEET 5 B 6 ILE B 198 ASN B 203 1 O ILE B 199 N ILE B 167 SHEET 6 B 6 LYS B 228 GLU B 231 1 O LYS B 228 N LEU B 200 LINK MG MG A 257 O HOH A 28 1555 1555 1.87 LINK OG SER B 105 MG MG B 257 1555 1555 1.88 LINK O3G GNP B 256 MG MG B 257 1555 1555 1.94 LINK OE2 GLU A 147 MG MG A 257 1555 1555 1.99 LINK MG MG B 257 O HOH B 30 1555 1555 2.01 LINK MG MG A 257 O HOH A 29 1555 1555 2.06 LINK O2B GNP B 256 MG MG B 257 1555 1555 2.27 LINK O2B GNP A 256 MG MG A 257 1555 1555 2.28 LINK MG MG B 257 O HOH B 31 1555 1555 2.28 SITE 1 AC1 19 HOH B 8 HOH B 20 HOH B 30 HOH B 31 SITE 2 AC1 19 PRO B 100 GLY B 101 VAL B 102 GLY B 103 SITE 3 AC1 19 LYS B 104 SER B 105 ALA B 106 ASN B 203 SITE 4 AC1 19 LYS B 204 ASP B 206 LEU B 207 SER B 233 SITE 5 AC1 19 ALA B 234 ALA B 235 MG B 257 SITE 1 AC2 5 HOH B 30 HOH B 31 SER B 105 GLU B 147 SITE 2 AC2 5 GNP B 256 SITE 1 AC3 17 HOH A 28 HOH A 29 GLY A 101 VAL A 102 SITE 2 AC3 17 GLY A 103 LYS A 104 SER A 105 ALA A 106 SITE 3 AC3 17 GLU A 147 ASN A 203 LYS A 204 ASP A 206 SITE 4 AC3 17 LEU A 207 SER A 233 ALA A 234 ALA A 235 SITE 5 AC3 17 MG A 257 SITE 1 AC4 5 HOH A 28 HOH A 29 SER A 105 GLU A 147 SITE 2 AC4 5 GNP A 256 CRYST1 38.628 38.628 153.456 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025888 0.014946 0.000000 0.00000 SCALE2 0.000000 0.029893 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006517 0.00000