HEADER HYDROLASE 11-OCT-10 3P5U TITLE ACTINIDIN FROM ACTINIDIA ARGUTA PLANCH (SARUSASHI) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTINIDIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.22.14 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACTINIDIA ARGUTA; SOURCE 3 ORGANISM_COMMON: SARUSASHI; SOURCE 4 ORGANISM_TAXID: 64478 KEYWDS SAD, CYSTEINE PROTEINASES, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.MANICKAM,N.NIRMAL,A.SUZUKI,Y.SUGIYAMA,T.YAMANE,V.DEVADASAN,A.SHARMA REVDAT 2 22-DEC-10 3P5U 1 JRNL REVDAT 1 03-NOV-10 3P5U 0 JRNL AUTH M.YOGAVEL,N.NITHYA,A.SUZUKI,Y.SUGIYAMA,T.YAMANE, JRNL AUTH 2 D.VELMURUGAN,A.SHARMA JRNL TITL STRUCTURAL ANALYSIS OF ACTINIDIN AND A COMPARISON OF CADMIUM JRNL TITL 2 AND SULFUR ANOMALOUS SIGNALS FROM ACTINIDIN CRYSTALS JRNL TITL 3 MEASURED USING IN-HOUSE COPPER- AND CHROMIUM-ANODE X-RAY JRNL TITL 4 SOURCES JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 66 1323 2010 JRNL REFN ISSN 0907-4449 JRNL PMID 21123873 JRNL DOI 10.1107/S0907444910040394 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 31690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1599 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2183 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.3350 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1690 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 288 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : -0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.289 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1793 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2458 ; 0.887 ; 1.924 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 237 ; 4.940 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;36.844 ;25.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 266 ;12.052 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;17.030 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 261 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1427 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 891 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1253 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 251 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.202 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.066 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1147 ; 0.374 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1791 ; 0.671 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 772 ; 1.000 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 658 ; 1.422 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3P5U COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-OCT-10. REMARK 100 THE RCSB ID CODE IS RCSB061993. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E DW REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31698 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 110.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 45.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.25100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 0.1M SODIUM ACETATE, 30MM REMARK 280 CADMIUM CHLORIDE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.39300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.44050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.08900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.44050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.39300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.08900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 172 NH1 ARG A 195 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 59 -168.94 -128.54 REMARK 500 VAL A 160 131.27 -38.26 REMARK 500 ASP A 161 -2.46 -147.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 24 11.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 490 DISTANCE = 5.01 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 222 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 269 O REMARK 620 2 ASP A 176 OD2 121.8 REMARK 620 3 ASP A 176 OD1 74.4 48.6 REMARK 620 4 HOH A 401 O 123.7 101.3 143.9 REMARK 620 5 HOH A 258 O 66.7 94.4 85.5 76.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 224 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 44 OD1 REMARK 620 2 HOH A 270 O 56.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 223 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 365 O REMARK 620 2 HOH A 420 O 86.6 REMARK 620 3 GLU A 191 OE2 85.0 138.7 REMARK 620 4 GLU A 191 OE1 76.7 84.2 54.6 REMARK 620 5 HOH A 421 O 103.8 134.9 86.3 140.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 221 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 267 O REMARK 620 2 HIS A 162 ND1 114.6 REMARK 620 3 HOH A 268 O 87.2 96.2 REMARK 620 4 CSD A 25 OD1 80.7 96.6 165.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 223 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 224 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 225 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AEC RELATED DB: PDB REMARK 900 RELATED ID: 2ACT RELATED DB: PDB REMARK 900 RELATED ID: 3P5V RELATED DB: PDB REMARK 900 RELATED ID: 3P5W RELATED DB: PDB REMARK 900 RELATED ID: 3P5X RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY REMARK 999 EXIST. THIS SEQUENCE WILL BE DEPOSITED IN THE SEQUENCE DATABASE. DBREF 3P5U A 1 220 PDB 3P5U 3P5U 1 220 SEQRES 1 A 220 LEU PRO ASP TYR VAL ASP TRP ARG SER SER GLY ALA VAL SEQRES 2 A 220 VAL ASP ILE LYS ASP GLN GLY GLN CYS GLY SER CSD TRP SEQRES 3 A 220 ALA PHE SER THR ILE ALA ALA VAL GLU GLY ILE ASN LYS SEQRES 4 A 220 ILE ALA THR GLY ASP LEU ILE SER LEU SER GLU GLN GLU SEQRES 5 A 220 LEU VAL ASP CYS GLY ARG THR GLN ASN THR ARG GLY CYS SEQRES 6 A 220 ASP GLY GLY PHE MET THR ASP GLY PHE GLN PHE ILE ILE SEQRES 7 A 220 ASN ASN GLY GLY ILE ASN THR GLU ALA ASN TYR PRO TYR SEQRES 8 A 220 THR ALA GLU GLU GLY GLN CYS ASN LEU ASP LEU GLN GLN SEQRES 9 A 220 GLU LYS TYR VAL SER ILE ASP THR TYR GLU ASN VAL PRO SEQRES 10 A 220 TYR ASN ASN GLU TRP ALA LEU GLN THR ALA VAL ALA TYR SEQRES 11 A 220 GLN PRO VAL SER VAL ALA LEU GLU ALA ALA GLY TYR ASN SEQRES 12 A 220 PHE GLN HIS TYR SER SER GLY ILE PHE THR GLY PRO CYS SEQRES 13 A 220 GLY THR ALA VAL ASP HIS ALA VAL THR ILE VAL GLY TYR SEQRES 14 A 220 GLY THR GLU GLY GLY ILE ASP TYR TRP ILE VAL LYS ASN SEQRES 15 A 220 SER TRP GLY THR THR TRP GLY GLU GLU GLY TYR MET ARG SEQRES 16 A 220 ILE GLN ARG ASN VAL GLY GLY VAL GLY GLN CYS GLY ILE SEQRES 17 A 220 ALA LYS LYS ALA SER TYR PRO VAL LYS TYR TYR ASN MODRES 3P5U CSD A 25 CYS 3-SULFINOALANINE HET CSD A 25 8 HET CD A 221 1 HET CD A 222 2 HET CD A 223 1 HET CD A 224 2 HET CD A 225 1 HETNAM CSD 3-SULFINOALANINE HETNAM CD CADMIUM ION HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE FORMUL 1 CSD C3 H7 N O4 S FORMUL 2 CD 5(CD 2+) FORMUL 7 HOH *288(H2 O) HELIX 1 1 SER A 24 GLY A 43 1 20 HELIX 2 2 SER A 49 GLY A 57 1 9 HELIX 3 3 ARG A 63 GLY A 67 5 5 HELIX 4 4 PHE A 69 GLY A 81 1 13 HELIX 5 5 ASN A 99 GLN A 104 1 6 HELIX 6 6 ASN A 120 ALA A 129 1 10 HELIX 7 7 GLY A 141 HIS A 146 1 6 HELIX 8 8 GLY A 204 ILE A 208 5 5 SHEET 1 A 3 VAL A 5 ASP A 6 0 SHEET 2 A 3 HIS A 162 GLU A 172 -1 O TYR A 169 N VAL A 5 SHEET 3 A 3 VAL A 133 LEU A 137 -1 N VAL A 133 O ILE A 166 SHEET 1 B 5 VAL A 5 ASP A 6 0 SHEET 2 B 5 HIS A 162 GLU A 172 -1 O TYR A 169 N VAL A 5 SHEET 3 B 5 ILE A 175 LYS A 181 -1 O LYS A 181 N THR A 165 SHEET 4 B 5 TYR A 193 GLN A 197 -1 O MET A 194 N VAL A 180 SHEET 5 B 5 ILE A 151 PHE A 152 1 N PHE A 152 O ARG A 195 SHEET 1 C 2 THR A 112 ASN A 115 0 SHEET 2 C 2 SER A 213 VAL A 216 -1 O VAL A 216 N THR A 112 SSBOND 1 CYS A 22 CYS A 65 1555 1555 2.03 SSBOND 2 CYS A 56 CYS A 98 1555 1555 2.04 SSBOND 3 CYS A 156 CYS A 206 1555 1555 2.05 LINK C SER A 24 N CSD A 25 1555 1555 1.37 LINK C CSD A 25 N TRP A 26 1555 1555 1.36 LINK CD A CD A 222 O AHOH A 269 1555 1555 2.18 LINK OD1AASP A 44 CD A CD A 224 1555 1555 2.23 LINK CD CD A 223 O HOH A 365 1555 1555 2.23 LINK CD CD A 223 O HOH A 420 1555 1555 2.24 LINK OD2 ASP A 176 CD A CD A 222 1555 1555 2.26 LINK CD A CD A 224 O HOH A 270 1555 1555 2.27 LINK CD CD A 221 O HOH A 267 1555 1555 2.29 LINK ND1 HIS A 162 CD CD A 221 1555 1555 2.29 LINK CD CD A 221 O HOH A 268 1555 1555 2.33 LINK OD1 ASP A 176 CD B CD A 222 1555 1555 2.33 LINK OE2 GLU A 191 CD CD A 223 1555 1555 2.38 LINK OE1 GLU A 191 CD CD A 223 1555 1555 2.40 LINK OD1 CSD A 25 CD CD A 221 1555 1555 2.44 LINK CD B CD A 222 O BHOH A 401 1555 1555 2.47 LINK OD2 ASP A 15 CD CD A 225 1555 1555 2.47 LINK OD2 ASP A 176 CD B CD A 222 1555 1555 2.47 LINK CD A CD A 222 O AHOH A 401 1555 1555 2.49 LINK CD CD A 223 O HOH A 421 1555 1555 2.59 LINK OD1BASP A 44 CD B CD A 224 1555 1555 2.67 LINK CD A CD A 222 O HOH A 258 1555 1555 2.68 CISPEP 1 GLY A 154 PRO A 155 0 0.75 SITE 1 AC1 5 CSD A 25 HIS A 162 ASN A 220 HOH A 267 SITE 2 AC1 5 HOH A 268 SITE 1 AC2 5 GLU A 114 ASP A 176 HOH A 258 HOH A 269 SITE 2 AC2 5 HOH A 401 SITE 1 AC3 4 GLU A 191 HOH A 365 HOH A 420 HOH A 421 SITE 1 AC4 4 ASP A 44 ASP A 101 HOH A 266 HOH A 270 SITE 1 AC5 2 ASP A 15 HOH A 244 CRYST1 48.786 56.178 70.881 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020498 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017801 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014108 0.00000