HEADER TRANSFERASE 30-SEP-10 3P1A TITLE STRUCTURE OF HUMAN MEMBRANE-ASSOCIATED TYROSINE- AND THREONINE- TITLE 2 SPECIFIC CDC2-INHIBITORY KINASE MYT1 (PKMYT1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE-ASSOCIATED TYROSINE- AND THREONINE-SPECIFIC CDC2- COMPND 3 INHIBITORY KINASE; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: KINASE DOMAIN, UNP RESIDUE 75-362; COMPND 6 SYNONYM: MYT1 KINASE; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MYT1, PKMYT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, PROTEIN KEYWDS 2 KINASE, TYROSINE- AND THREONINE-SPECIFIC KINASE, MEMBRANE-ASSOCIATED KEYWDS 3 PROTEIN KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,J.ESWARAN,O.FEDOROV,C.D.O.COOPER,T.KROELER,M.VOLLMAR, AUTHOR 2 T.KROJER,G.BERRIDGE,J.R.C.MUNIZ,A.C.W.PIKE,F.VON DELFT,J.WEIGELT, AUTHOR 3 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,S.KNAPP,STRUCTURAL GENOMICS AUTHOR 4 CONSORTIUM (SGC) REVDAT 1 03-NOV-10 3P1A 0 JRNL AUTH A.CHAIKUAD,J.ESWARAN,O.FEDOROV,C.D.O.COOPER,T.KROELER, JRNL AUTH 2 M.VOLLMAR,T.KROJER,G.BERRIDGE,J.R.C.MUNIZ,A.C.W.PIKE, JRNL AUTH 3 F.VON DELFT,J.WEIGELT,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA, JRNL AUTH 4 S.KNAPP JRNL TITL STRUCTURE OF HUMAN MEMBRANE-ASSOCIATED TYROSINE- AND JRNL TITL 2 THREONINE-SPECIFIC CDC2-INHIBITORY KINASE MYT1 (PKMYT1) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 30914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1639 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2107 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2170 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.32000 REMARK 3 B22 (A**2) : 0.79000 REMARK 3 B33 (A**2) : -0.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.420 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2358 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1717 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3182 ; 1.560 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4153 ; 0.985 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 306 ; 5.154 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;26.810 ;22.547 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 393 ;11.539 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;18.656 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 336 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2627 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 489 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1439 ; 2.762 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 584 ; 0.842 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2306 ; 4.161 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 919 ; 6.631 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 862 ; 8.994 ;11.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): 31.0010 19.2122 -14.6596 REMARK 3 T TENSOR REMARK 3 T11: 0.0930 T22: 0.1184 REMARK 3 T33: 0.0343 T12: 0.0772 REMARK 3 T13: 0.0127 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 15.6834 L22: 6.0463 REMARK 3 L33: 23.0286 L12: -4.2390 REMARK 3 L13: 15.3391 L23: 2.1256 REMARK 3 S TENSOR REMARK 3 S11: 0.2412 S12: 0.8092 S13: -0.0903 REMARK 3 S21: 0.3667 S22: 0.0022 S23: -0.0628 REMARK 3 S31: 0.8501 S32: 1.1341 S33: -0.2434 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 152 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8820 27.5233 -15.6248 REMARK 3 T TENSOR REMARK 3 T11: 0.0332 T22: 0.0362 REMARK 3 T33: 0.0437 T12: -0.0105 REMARK 3 T13: -0.0076 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.4588 L22: 0.4237 REMARK 3 L33: 0.1393 L12: 0.0851 REMARK 3 L13: 0.0114 L23: -0.0442 REMARK 3 S TENSOR REMARK 3 S11: 0.0222 S12: 0.0067 S13: -0.0184 REMARK 3 S21: 0.0166 S22: -0.0171 S23: -0.0060 REMARK 3 S31: 0.0050 S32: 0.0074 S33: -0.0051 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 153 A 268 REMARK 3 ORIGIN FOR THE GROUP (A): 21.3069 26.7363 3.7289 REMARK 3 T TENSOR REMARK 3 T11: 0.0445 T22: 0.0336 REMARK 3 T33: 0.0420 T12: 0.0100 REMARK 3 T13: 0.0056 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.2359 L22: 0.0288 REMARK 3 L33: 0.5296 L12: 0.0749 REMARK 3 L13: -0.0685 L23: 0.0268 REMARK 3 S TENSOR REMARK 3 S11: -0.0335 S12: 0.0087 S13: -0.0270 REMARK 3 S21: -0.0074 S22: 0.0036 S23: -0.0032 REMARK 3 S31: 0.0342 S32: -0.0306 S33: 0.0299 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 269 A 362 REMARK 3 ORIGIN FOR THE GROUP (A): 24.7280 34.8473 19.8909 REMARK 3 T TENSOR REMARK 3 T11: 0.0334 T22: 0.0549 REMARK 3 T33: 0.0270 T12: 0.0076 REMARK 3 T13: 0.0018 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 0.3217 L22: 0.4412 REMARK 3 L33: 0.3318 L12: 0.0974 REMARK 3 L13: -0.3018 L23: -0.0969 REMARK 3 S TENSOR REMARK 3 S11: 0.0112 S12: -0.0474 S13: 0.0145 REMARK 3 S21: 0.0103 S22: -0.0112 S23: -0.0093 REMARK 3 S31: -0.0041 S32: 0.0409 S33: 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS DURING REFINEMENT REMARK 4 REMARK 4 3P1A COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-OCT-10. REMARK 100 THE RCSB ID CODE IS RCSB061831. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9245 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : KIRKPATRICK BAEZ BIMORPH MIRROR REMARK 200 PAIR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32553 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 35.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.44500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 2C30 AND 3CR0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M KSCN, 0.1M BIS-TRIS REMARK 280 PROPANE, PH 6.5, 10% ETHYLENE GLYCOL , VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.70000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.33000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.15000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.33000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.70000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.15000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 52 REMARK 465 HIS A 53 REMARK 465 HIS A 54 REMARK 465 HIS A 55 REMARK 465 HIS A 56 REMARK 465 HIS A 57 REMARK 465 HIS A 58 REMARK 465 SER A 59 REMARK 465 SER A 60 REMARK 465 GLY A 61 REMARK 465 VAL A 62 REMARK 465 ASP A 63 REMARK 465 LEU A 64 REMARK 465 GLY A 65 REMARK 465 THR A 66 REMARK 465 GLU A 67 REMARK 465 ASN A 68 REMARK 465 LEU A 69 REMARK 465 TYR A 70 REMARK 465 PHE A 71 REMARK 465 GLN A 72 REMARK 465 SER A 73 REMARK 465 MET A 74 REMARK 465 HIS A 75 REMARK 465 THR A 260 REMARK 465 ALA A 261 REMARK 465 GLY A 262 REMARK 465 ALA A 263 REMARK 465 GLY A 264 REMARK 465 GLU A 265 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 76 CG CD OE1 NE2 REMARK 470 LEU A 77 CG CD1 CD2 REMARK 470 ARG A 244 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 266 CG1 CG2 REMARK 470 GLN A 267 CG CD OE1 NE2 REMARK 470 GLN A 361 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 400 O HOH A 425 2.06 REMARK 500 O HOH A 658 O HOH A 659 2.11 REMARK 500 O HOH A 410 O HOH A 423 2.15 REMARK 500 O HOH A 379 O HOH A 389 2.17 REMARK 500 O HOH A 463 O HOH A 670 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 514 O HOH A 657 2565 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 77 70.91 -102.16 REMARK 500 LEU A 232 -3.49 71.41 REMARK 500 ASP A 233 43.87 -144.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 605 DISTANCE = 5.58 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 14 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 15 DBREF 3P1A A 75 362 UNP Q99640 PMYT1_HUMAN 75 362 SEQADV 3P1A MET A 52 UNP Q99640 EXPRESSION TAG SEQADV 3P1A HIS A 53 UNP Q99640 EXPRESSION TAG SEQADV 3P1A HIS A 54 UNP Q99640 EXPRESSION TAG SEQADV 3P1A HIS A 55 UNP Q99640 EXPRESSION TAG SEQADV 3P1A HIS A 56 UNP Q99640 EXPRESSION TAG SEQADV 3P1A HIS A 57 UNP Q99640 EXPRESSION TAG SEQADV 3P1A HIS A 58 UNP Q99640 EXPRESSION TAG SEQADV 3P1A SER A 59 UNP Q99640 EXPRESSION TAG SEQADV 3P1A SER A 60 UNP Q99640 EXPRESSION TAG SEQADV 3P1A GLY A 61 UNP Q99640 EXPRESSION TAG SEQADV 3P1A VAL A 62 UNP Q99640 EXPRESSION TAG SEQADV 3P1A ASP A 63 UNP Q99640 EXPRESSION TAG SEQADV 3P1A LEU A 64 UNP Q99640 EXPRESSION TAG SEQADV 3P1A GLY A 65 UNP Q99640 EXPRESSION TAG SEQADV 3P1A THR A 66 UNP Q99640 EXPRESSION TAG SEQADV 3P1A GLU A 67 UNP Q99640 EXPRESSION TAG SEQADV 3P1A ASN A 68 UNP Q99640 EXPRESSION TAG SEQADV 3P1A LEU A 69 UNP Q99640 EXPRESSION TAG SEQADV 3P1A TYR A 70 UNP Q99640 EXPRESSION TAG SEQADV 3P1A PHE A 71 UNP Q99640 EXPRESSION TAG SEQADV 3P1A GLN A 72 UNP Q99640 EXPRESSION TAG SEQADV 3P1A SER A 73 UNP Q99640 EXPRESSION TAG SEQADV 3P1A MET A 74 UNP Q99640 EXPRESSION TAG SEQRES 1 A 311 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 311 GLY THR GLU ASN LEU TYR PHE GLN SER MET HIS GLN LEU SEQRES 3 A 311 GLN PRO ARG ARG VAL SER PHE ARG GLY GLU ALA SER GLU SEQRES 4 A 311 THR LEU GLN SER PRO GLY TYR ASP PRO SER ARG PRO GLU SEQRES 5 A 311 SER PHE PHE GLN GLN SER PHE GLN ARG LEU SER ARG LEU SEQRES 6 A 311 GLY HIS GLY SER TYR GLY GLU VAL PHE LYS VAL ARG SER SEQRES 7 A 311 LYS GLU ASP GLY ARG LEU TYR ALA VAL LYS ARG SER MET SEQRES 8 A 311 SER PRO PHE ARG GLY PRO LYS ASP ARG ALA ARG LYS LEU SEQRES 9 A 311 ALA GLU VAL GLY SER HIS GLU LYS VAL GLY GLN HIS PRO SEQRES 10 A 311 CYS CYS VAL ARG LEU GLU GLN ALA TRP GLU GLU GLY GLY SEQRES 11 A 311 ILE LEU TYR LEU GLN THR GLU LEU CYS GLY PRO SER LEU SEQRES 12 A 311 GLN GLN HIS CYS GLU ALA TRP GLY ALA SER LEU PRO GLU SEQRES 13 A 311 ALA GLN VAL TRP GLY TYR LEU ARG ASP THR LEU LEU ALA SEQRES 14 A 311 LEU ALA HIS LEU HIS SER GLN GLY LEU VAL HIS LEU ASP SEQRES 15 A 311 VAL LYS PRO ALA ASN ILE PHE LEU GLY PRO ARG GLY ARG SEQRES 16 A 311 CYS LYS LEU GLY ASP PHE GLY LEU LEU VAL GLU LEU GLY SEQRES 17 A 311 THR ALA GLY ALA GLY GLU VAL GLN GLU GLY ASP PRO ARG SEQRES 18 A 311 TYR MET ALA PRO GLU LEU LEU GLN GLY SER TYR GLY THR SEQRES 19 A 311 ALA ALA ASP VAL PHE SER LEU GLY LEU THR ILE LEU GLU SEQRES 20 A 311 VAL ALA CYS ASN MET GLU LEU PRO HIS GLY GLY GLU GLY SEQRES 21 A 311 TRP GLN GLN LEU ARG GLN GLY TYR LEU PRO PRO GLU PHE SEQRES 22 A 311 THR ALA GLY LEU SER SER GLU LEU ARG SER VAL LEU VAL SEQRES 23 A 311 MET MET LEU GLU PRO ASP PRO LYS LEU ARG ALA THR ALA SEQRES 24 A 311 GLU ALA LEU LEU ALA LEU PRO VAL LEU ARG GLN PRO HET EDO A 1 4 HET EDO A 2 4 HET EDO A 3 8 HET EDO A 5 4 HET EDO A 7 4 HET EDO A 8 4 HET EDO A 9 8 HET EDO A 11 4 HET EDO A 12 8 HET EDO A 13 4 HET DMS A 14 4 HET DMS A 15 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM DMS DIMETHYL SULFOXIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 10(C2 H6 O2) FORMUL 12 DMS 2(C2 H6 O S) FORMUL 14 HOH *350(H2 O) HELIX 1 1 SER A 104 SER A 109 1 6 HELIX 2 2 GLY A 147 GLY A 165 1 19 HELIX 3 3 SER A 193 GLY A 202 1 10 HELIX 4 4 PRO A 206 GLN A 227 1 22 HELIX 5 5 LYS A 235 ALA A 237 5 3 HELIX 6 6 PRO A 243 GLY A 245 5 3 HELIX 7 7 ASP A 270 MET A 274 5 5 HELIX 8 8 ALA A 275 GLY A 281 5 7 HELIX 9 9 THR A 285 ASN A 302 1 18 HELIX 10 10 GLY A 308 ARG A 316 1 9 HELIX 11 11 PRO A 321 ALA A 326 1 6 HELIX 12 12 SER A 329 LEU A 340 1 12 HELIX 13 13 THR A 349 ALA A 355 1 7 HELIX 14 14 LEU A 356 ARG A 360 5 5 SHEET 1 A 6 ARG A 80 ARG A 81 0 SHEET 2 A 6 LEU A 173 GLU A 179 -1 O GLU A 178 N ARG A 80 SHEET 3 A 6 ILE A 182 GLU A 188 -1 O GLN A 186 N GLN A 175 SHEET 4 A 6 LEU A 135 SER A 141 -1 N LYS A 139 O LEU A 185 SHEET 5 A 6 GLY A 122 SER A 129 -1 N PHE A 125 O VAL A 138 SHEET 6 A 6 PHE A 110 GLY A 119 -1 N LEU A 113 O LYS A 126 SHEET 1 B 2 LEU A 229 VAL A 230 0 SHEET 2 B 2 VAL A 256 GLU A 257 -1 O VAL A 256 N VAL A 230 SHEET 1 C 2 ILE A 239 LEU A 241 0 SHEET 2 C 2 CYS A 247 LEU A 249 -1 O LYS A 248 N PHE A 240 SITE 1 AC1 6 DMS A 14 ARG A 112 SER A 114 GLY A 309 SITE 2 AC1 6 GLN A 313 HOH A 373 SITE 1 AC2 5 VAL A 171 THR A 187 GLU A 188 CYS A 190 SITE 2 AC2 5 HOH A 461 SITE 1 AC3 2 PRO A 321 HOH A 389 SITE 1 AC4 4 LYS A 130 GLU A 131 GLU A 351 HOH A 622 SITE 1 AC5 3 ARG A 80 SER A 83 PHE A 84 SITE 1 AC6 5 DMS A 14 GLU A 123 PHE A 125 TRP A 312 SITE 2 AC6 5 GLN A 313 SITE 1 AC7 7 SER A 143 PRO A 144 SER A 204 CYS A 301 SITE 2 AC7 7 ASN A 302 HOH A 386 HOH A 543 SITE 1 AC8 4 GLU A 310 GLU A 331 HOH A 365 HOH A 478 SITE 1 AC9 6 PRO A 148 GLU A 304 PRO A 306 HOH A 376 SITE 2 AC9 6 HOH A 396 HOH A 427 SITE 1 BC1 3 LYS A 139 ASP A 251 HOH A 590 SITE 1 BC2 8 EDO A 1 EDO A 8 SER A 114 ARG A 115 SITE 2 BC2 8 HIS A 307 GLY A 308 HOH A 511 HOH A 519 SITE 1 BC3 10 HOH A 34 SER A 204 ALA A 300 PHE A 324 SITE 2 BC3 10 THR A 325 GLY A 327 LEU A 328 HOH A 385 SITE 3 BC3 10 HOH A 441 HOH A 504 CRYST1 45.400 56.300 114.660 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022026 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017762 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008721 0.00000