HEADER TRANSFERASE 27-JUL-10 3O4Y TITLE CRYSTAL STRUCTURE OF CAD DOMAIN OF THE PLASMODIUM VIVAX CDPK, TITLE 2 PVX_11610 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM-DEPENDENT PROTEIN KINASE 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 425-602; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 3 ORGANISM_TAXID: 5855; SOURCE 4 GENE: PVX_119610; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: PET15; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15MLH KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, EF-HAND, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.K.WERNIMONT,A.HUTCHINSON,H.SULLIVAN,J.WEADGE,A.BOCHKAREV, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,R.HUI,M.AMANI, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 08-NOV-17 3O4Y 1 REMARK REVDAT 1 25-AUG-10 3O4Y 0 JRNL AUTH A.K.WERNIMONT,A.HUTCHINSON,H.SULLIVAN,J.WEADGE,A.BOCHKAREV, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,R.HUI,M.AMANI JRNL TITL CRYSTAL STRUCTURE OF CAD DOMAIN OF THE PLASMODIUM VIVAX JRNL TITL 2 CDPK, PVX_11610 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 9969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 488 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 672 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1369 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 75 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -16.03000 REMARK 3 B22 (A**2) : 26.14000 REMARK 3 B33 (A**2) : -10.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.053 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.171 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.158 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1496 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1010 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2021 ; 1.347 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2467 ; 0.910 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 187 ; 4.599 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;34.724 ;25.128 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 276 ;16.985 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;14.607 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 222 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1697 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 308 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 909 ; 0.514 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 369 ; 0.197 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1462 ; 0.768 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 587 ; 1.642 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 559 ; 2.462 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2506 ; 0.701 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 20 REMARK 3 ORIGIN FOR THE GROUP (A): 6.4165 23.7604 -32.5085 REMARK 3 T TENSOR REMARK 3 T11: 0.4333 T22: 0.1773 REMARK 3 T33: 0.6040 T12: -0.0695 REMARK 3 T13: -0.1703 T23: -0.1558 REMARK 3 L TENSOR REMARK 3 L11: 18.9689 L22: 2.1011 REMARK 3 L33: 23.7480 L12: 5.8187 REMARK 3 L13: 0.3824 L23: -2.5588 REMARK 3 S TENSOR REMARK 3 S11: 0.0283 S12: 0.0364 S13: 0.3574 REMARK 3 S21: 0.0965 S22: -0.0761 S23: 0.0216 REMARK 3 S31: -0.1985 S32: 0.6497 S33: 0.0478 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 36 REMARK 3 ORIGIN FOR THE GROUP (A): 7.8629 22.1696 -11.0156 REMARK 3 T TENSOR REMARK 3 T11: 0.2453 T22: 0.1882 REMARK 3 T33: 0.2961 T12: -0.0533 REMARK 3 T13: -0.0326 T23: -0.0639 REMARK 3 L TENSOR REMARK 3 L11: 9.4178 L22: 4.1379 REMARK 3 L33: 41.6163 L12: -3.3540 REMARK 3 L13: 6.5601 L23: -4.3478 REMARK 3 S TENSOR REMARK 3 S11: -0.0827 S12: 0.1787 S13: 0.2167 REMARK 3 S21: -0.3919 S22: -0.4740 S23: -0.2631 REMARK 3 S31: 0.1105 S32: 0.5444 S33: 0.5566 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 51 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9103 23.5486 11.1958 REMARK 3 T TENSOR REMARK 3 T11: 0.2267 T22: 0.1186 REMARK 3 T33: 0.2465 T12: -0.0844 REMARK 3 T13: -0.0977 T23: -0.0572 REMARK 3 L TENSOR REMARK 3 L11: 6.5737 L22: 3.0065 REMARK 3 L33: 19.0129 L12: -1.6087 REMARK 3 L13: -6.1799 L23: 1.9264 REMARK 3 S TENSOR REMARK 3 S11: -0.1532 S12: -0.0053 S13: -0.3110 REMARK 3 S21: 0.3543 S22: -0.2388 S23: -0.0758 REMARK 3 S31: 0.6150 S32: 0.2398 S33: 0.3920 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 65 REMARK 3 ORIGIN FOR THE GROUP (A): 3.3951 15.1362 21.6042 REMARK 3 T TENSOR REMARK 3 T11: 0.3569 T22: 0.1936 REMARK 3 T33: 0.3447 T12: -0.1110 REMARK 3 T13: -0.1877 T23: -0.0716 REMARK 3 L TENSOR REMARK 3 L11: 4.4687 L22: 8.5310 REMARK 3 L33: 6.9001 L12: 1.3426 REMARK 3 L13: -1.6267 L23: 3.4402 REMARK 3 S TENSOR REMARK 3 S11: 0.3128 S12: -0.3924 S13: -0.3917 REMARK 3 S21: 0.2273 S22: -0.0175 S23: -0.7941 REMARK 3 S31: 0.3196 S32: 0.4439 S33: -0.2952 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): -5.6718 9.7491 16.8041 REMARK 3 T TENSOR REMARK 3 T11: 0.3623 T22: 0.1036 REMARK 3 T33: 0.3175 T12: -0.1052 REMARK 3 T13: -0.0873 T23: -0.0894 REMARK 3 L TENSOR REMARK 3 L11: 6.0791 L22: 4.6729 REMARK 3 L33: 9.2924 L12: 0.1621 REMARK 3 L13: -0.9089 L23: -0.2225 REMARK 3 S TENSOR REMARK 3 S11: -0.2098 S12: -0.0814 S13: -0.5225 REMARK 3 S21: -0.0093 S22: 0.0045 S23: -0.1288 REMARK 3 S31: 0.5123 S32: -0.2031 S33: 0.2054 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): -8.7460 13.2852 7.5862 REMARK 3 T TENSOR REMARK 3 T11: 0.3928 T22: 0.1761 REMARK 3 T33: 0.2561 T12: -0.1049 REMARK 3 T13: -0.1271 T23: -0.1338 REMARK 3 L TENSOR REMARK 3 L11: 20.1194 L22: 15.2475 REMARK 3 L33: 25.4731 L12: -2.8530 REMARK 3 L13: -6.5317 L23: -4.6229 REMARK 3 S TENSOR REMARK 3 S11: 0.0207 S12: 0.5785 S13: -0.4826 REMARK 3 S21: -0.2472 S22: -0.0282 S23: 0.0475 REMARK 3 S31: 0.6981 S32: 0.1338 S33: 0.0075 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 104 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): 0.8969 15.8613 11.0394 REMARK 3 T TENSOR REMARK 3 T11: 0.2681 T22: 0.1525 REMARK 3 T33: 0.2603 T12: -0.0666 REMARK 3 T13: -0.1325 T23: -0.0877 REMARK 3 L TENSOR REMARK 3 L11: 2.1973 L22: 30.7515 REMARK 3 L33: 3.1828 L12: 4.6960 REMARK 3 L13: -0.6449 L23: 2.1404 REMARK 3 S TENSOR REMARK 3 S11: -0.0996 S12: 0.1935 S13: -0.4481 REMARK 3 S21: -0.8688 S22: 0.1799 S23: -0.1389 REMARK 3 S31: 0.3081 S32: 0.1913 S33: -0.0803 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 119 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): 5.1127 33.3144 12.9152 REMARK 3 T TENSOR REMARK 3 T11: 0.2495 T22: 0.1142 REMARK 3 T33: 0.2286 T12: -0.0430 REMARK 3 T13: -0.0732 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 19.4825 L22: 8.5786 REMARK 3 L33: 6.0174 L12: 4.9042 REMARK 3 L13: 4.3467 L23: 4.8328 REMARK 3 S TENSOR REMARK 3 S11: -0.1373 S12: -0.1873 S13: 0.8473 REMARK 3 S21: 0.0471 S22: -0.0008 S23: 0.6367 REMARK 3 S31: -0.4099 S32: -0.2254 S33: 0.1380 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 126 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8163 26.0523 1.4154 REMARK 3 T TENSOR REMARK 3 T11: 0.2174 T22: 0.3768 REMARK 3 T33: 0.2925 T12: -0.1238 REMARK 3 T13: -0.1072 T23: -0.1849 REMARK 3 L TENSOR REMARK 3 L11: 0.0939 L22: 0.9151 REMARK 3 L33: 3.4252 L12: -0.0308 REMARK 3 L13: 0.1936 L23: 0.4582 REMARK 3 S TENSOR REMARK 3 S11: -0.0357 S12: 0.1572 S13: -0.0973 REMARK 3 S21: 0.0260 S22: 0.2243 S23: -0.1788 REMARK 3 S31: 0.2466 S32: 0.3336 S33: -0.1886 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 169 A 189 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9454 34.7617 -2.0849 REMARK 3 T TENSOR REMARK 3 T11: 0.2829 T22: 0.2587 REMARK 3 T33: 0.1818 T12: -0.1676 REMARK 3 T13: -0.0984 T23: -0.0710 REMARK 3 L TENSOR REMARK 3 L11: 7.5252 L22: 2.5779 REMARK 3 L33: 11.3921 L12: 0.3409 REMARK 3 L13: -4.9823 L23: -0.2176 REMARK 3 S TENSOR REMARK 3 S11: -0.3807 S12: 0.1317 S13: -0.0262 REMARK 3 S21: -0.4400 S22: 0.3699 S23: 0.0937 REMARK 3 S31: -0.3696 S32: 0.0293 S33: 0.0108 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 190 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): 4.8123 33.4429 4.8618 REMARK 3 T TENSOR REMARK 3 T11: 0.2518 T22: 0.3284 REMARK 3 T33: 0.2731 T12: -0.1128 REMARK 3 T13: -0.1648 T23: -0.0818 REMARK 3 L TENSOR REMARK 3 L11: 9.6882 L22: 13.3954 REMARK 3 L33: 5.8074 L12: 8.7842 REMARK 3 L13: 2.5858 L23: 2.7049 REMARK 3 S TENSOR REMARK 3 S11: -0.1501 S12: -0.0468 S13: 0.6629 REMARK 3 S21: -0.7605 S22: -0.0116 S23: 1.1884 REMARK 3 S31: -0.2647 S32: -0.4523 S33: 0.1617 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3O4Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000060670. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16607 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.60800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3K21 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % PEG 3350, 0.2 M NH4DIHPO4, 5 MM REMARK 280 MGCL2, 20% GLYCEROL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.05300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.42900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.87850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.05300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.42900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.87850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.05300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.42900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.87850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.05300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.42900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 42.87850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 P PO4 A 200 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 ARG A 11 REMARK 465 GLU A 12 REMARK 465 GLU A 66 REMARK 465 GLU A 67 REMARK 465 GLY A 68 REMARK 465 SER A 101 REMARK 465 ASP A 102 REMARK 465 GLY A 103 REMARK 465 GLY A 154 REMARK 465 ASN A 155 REMARK 465 LYS A 156 REMARK 465 ARG A 157 REMARK 465 GLY A 158 REMARK 465 LEU A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 14 CG CD1 CD2 REMARK 470 ILE A 22 CG1 CD1 REMARK 470 LYS A 39 CD CE NZ REMARK 470 HIS A 63 ND1 CD2 CE1 NE2 REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 ARG A 83 CG CD NE CZ NH1 NH2 REMARK 470 SER A 104 OG REMARK 470 GLU A 174 CG CD OE1 OE2 REMARK 470 THR A 195 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 163 O HOH A 275 1.95 REMARK 500 O2 GOL A 199 O HOH A 241 2.06 REMARK 500 OD1 ASN A 166 O HOH A 235 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 197 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 146 OE2 REMARK 620 2 HOH A 201 O 78.3 REMARK 620 3 GLU A 146 OE2 9.3 71.0 REMARK 620 4 GLU A 141 O 106.9 115.4 104.4 REMARK 620 5 ASP A 139 OD1 163.3 93.3 162.2 89.7 REMARK 620 6 ASP A 135 OD1 90.5 158.8 99.2 84.8 92.8 REMARK 620 7 ASP A 137 OD1 80.8 83.1 85.9 160.8 83.9 77.4 REMARK 620 8 ASP A 137 OD1 63.2 74.9 67.7 165.1 100.8 84.1 18.4 REMARK 620 9 GLU A 146 OE1 49.6 79.9 43.9 62.5 143.7 106.4 129.7 111.5 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 198 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 182 O REMARK 620 2 ASN A 178 OD1 158.9 REMARK 620 3 ASP A 180 OD1 78.9 80.7 REMARK 620 4 ASP A 176 OD1 90.1 84.4 89.5 REMARK 620 5 GLU A 187 OE1 76.8 124.3 153.3 101.3 REMARK 620 6 GLU A 187 OE2 128.7 71.8 152.4 90.8 52.9 REMARK 620 7 HOH A 202 O 82.7 97.6 76.4 165.1 89.8 103.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 197 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 200 DBREF 3O4Y A 19 196 UNP A5KBB4 A5KBB4_PLAVI 425 602 SEQADV 3O4Y MET A 1 UNP A5KBB4 EXPRESSION TAG SEQADV 3O4Y HIS A 2 UNP A5KBB4 EXPRESSION TAG SEQADV 3O4Y HIS A 3 UNP A5KBB4 EXPRESSION TAG SEQADV 3O4Y HIS A 4 UNP A5KBB4 EXPRESSION TAG SEQADV 3O4Y HIS A 5 UNP A5KBB4 EXPRESSION TAG SEQADV 3O4Y HIS A 6 UNP A5KBB4 EXPRESSION TAG SEQADV 3O4Y HIS A 7 UNP A5KBB4 EXPRESSION TAG SEQADV 3O4Y SER A 8 UNP A5KBB4 EXPRESSION TAG SEQADV 3O4Y SER A 9 UNP A5KBB4 EXPRESSION TAG SEQADV 3O4Y GLY A 10 UNP A5KBB4 EXPRESSION TAG SEQADV 3O4Y ARG A 11 UNP A5KBB4 EXPRESSION TAG SEQADV 3O4Y GLU A 12 UNP A5KBB4 EXPRESSION TAG SEQADV 3O4Y ASN A 13 UNP A5KBB4 EXPRESSION TAG SEQADV 3O4Y LEU A 14 UNP A5KBB4 EXPRESSION TAG SEQADV 3O4Y TYR A 15 UNP A5KBB4 EXPRESSION TAG SEQADV 3O4Y PHE A 16 UNP A5KBB4 EXPRESSION TAG SEQADV 3O4Y GLN A 17 UNP A5KBB4 EXPRESSION TAG SEQADV 3O4Y GLY A 18 UNP A5KBB4 EXPRESSION TAG SEQRES 1 A 196 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 196 LEU TYR PHE GLN GLY LYS ILE ASP ILE HIS VAL LEU GLU SEQRES 3 A 196 ASN PHE LYS ASN TYR ALA LEU MET LEU ARG PHE GLN LYS SEQRES 4 A 196 LEU ALA MET THR ILE ILE ALA GLN GLN SER ASN ASP TYR SEQRES 5 A 196 ASP VAL GLN LYS LEU LYS ALA ALA PHE LEU HIS LEU ASP SEQRES 6 A 196 GLU GLU GLY LYS GLY ASN ILE THR LYS LEU GLN LEU ARG SEQRES 7 A 196 LYS GLY LEU GLU ARG SER GLY LEU MET LEU PRO PRO ASN SEQRES 8 A 196 PHE ASP LEU LEU LEU ASP GLN ILE ASP SER ASP GLY SER SEQRES 9 A 196 GLY ASN ILE ASP TYR THR GLU PHE LEU ALA ALA ALA ILE SEQRES 10 A 196 ASP ARG ARG GLN LEU SER LYS LYS LEU ILE TYR CYS ALA SEQRES 11 A 196 PHE ARG VAL PHE ASP VAL ASP ASN ASP GLY GLU ILE THR SEQRES 12 A 196 THR ALA GLU LEU ALA HIS VAL LEU PHE ASN GLY ASN LYS SEQRES 13 A 196 ARG GLY ASN ILE THR GLU ARG ASP VAL ASN GLN VAL LYS SEQRES 14 A 196 LYS MET ILE ARG GLU VAL ASP LYS ASN GLY ASP GLY LYS SEQRES 15 A 196 ILE ASP PHE TYR GLU PHE SER GLU MET MET LYS LEU THR SEQRES 16 A 196 LEU HET CA A 197 1 HET CA A 198 1 HET GOL A 199 6 HET PO4 A 200 5 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CA 2(CA 2+) FORMUL 4 GOL C3 H8 O3 FORMUL 5 PO4 O4 P 3- FORMUL 6 HOH *75(H2 O) HELIX 1 1 ASN A 13 ILE A 20 1 8 HELIX 2 2 ILE A 22 SER A 49 1 28 HELIX 3 3 ASP A 51 ASP A 65 1 15 HELIX 4 4 LYS A 74 SER A 84 1 11 HELIX 5 5 ASN A 91 ASP A 100 1 10 HELIX 6 6 TYR A 109 ALA A 116 1 8 HELIX 7 7 ASP A 118 LEU A 122 5 5 HELIX 8 8 SER A 123 ASP A 135 1 13 HELIX 9 9 THR A 143 ASN A 153 1 11 HELIX 10 10 THR A 161 ILE A 172 1 12 HELIX 11 11 ARG A 173 VAL A 175 5 3 HELIX 12 12 PHE A 185 LYS A 193 1 9 SHEET 1 A 2 ASN A 71 THR A 73 0 SHEET 2 A 2 ASN A 106 ASP A 108 -1 O ILE A 107 N ILE A 72 SHEET 1 B 2 GLU A 141 ILE A 142 0 SHEET 2 B 2 ILE A 183 ASP A 184 -1 O ILE A 183 N ILE A 142 LINK OE2AGLU A 146 CA CA A 197 1555 1555 2.07 LINK O LYS A 182 CA CA A 198 1555 1555 2.19 LINK OD1 ASN A 178 CA CA A 198 1555 1555 2.20 LINK CA CA A 197 O HOH A 201 1555 1555 2.24 LINK OE2BGLU A 146 CA CA A 197 1555 1555 2.24 LINK O GLU A 141 CA CA A 197 1555 1555 2.27 LINK OD1 ASP A 180 CA CA A 198 1555 1555 2.31 LINK OD1 ASP A 176 CA CA A 198 1555 1555 2.31 LINK OD1 ASP A 139 CA CA A 197 1555 1555 2.33 LINK OD1 ASP A 135 CA CA A 197 1555 1555 2.34 LINK OE1 GLU A 187 CA CA A 198 1555 1555 2.44 LINK OE2 GLU A 187 CA CA A 198 1555 1555 2.45 LINK OD1AASP A 137 CA CA A 197 1555 1555 2.46 LINK OD1BASP A 137 CA CA A 197 1555 1555 2.48 LINK CA CA A 198 O HOH A 202 1555 1555 2.58 LINK OE1AGLU A 146 CA CA A 197 1555 1555 2.82 SITE 1 AC1 6 ASP A 135 ASP A 137 ASP A 139 GLU A 141 SITE 2 AC1 6 GLU A 146 HOH A 201 SITE 1 AC2 6 ASP A 176 ASN A 178 ASP A 180 LYS A 182 SITE 2 AC2 6 GLU A 187 HOH A 202 SITE 1 AC3 6 TYR A 128 PHE A 131 ASP A 135 ASN A 138 SITE 2 AC3 6 GLY A 140 HOH A 241 SITE 1 AC4 3 HIS A 149 ASN A 153 ILE A 160 CRYST1 52.106 84.858 85.757 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019192 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011784 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011661 0.00000