HEADER SUGAR BINDING PROTEIN 28-JAN-10 3LL2 TITLE MONOMERIC GRIFFITHSIN IN COMPLEX WITH A HIGH-MANNOSE BRANCHED TITLE 2 CARBOHYDRATE CAVEAT 3LL2 MAN B 8 HAS WRONG CHIRALITY AT ATOM C1 MAN B 8 HAS WRONG CAVEAT 2 3LL2 CHIRALITY AT ATOM C4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GRIFFITHSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GRFT; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GRIFFITHSIA; SOURCE 3 ORGANISM_COMMON: RED ALGA; SOURCE 4 ORGANISM_TAXID: 373036; SOURCE 5 STRAIN: Q66D336; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS LECTIN, SUGAR-BINDING, ANTI-HIV, HIGH MANNOSE, MAN9, GP120, GP41, KEYWDS 2 JACALIN-RELATED, MANNOSE-BINDING, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.MOULAEI,A.WLODAWER REVDAT 4 13-OCT-21 3LL2 1 SEQADV HETSYN REVDAT 3 29-JUL-20 3LL2 1 CAVEAT COMPND REMARK SEQADV REVDAT 3 2 1 HETNAM LINK SITE ATOM REVDAT 2 01-NOV-17 3LL2 1 REMARK REVDAT 1 06-OCT-10 3LL2 0 JRNL AUTH T.MOULAEI,S.R.SHENOY,B.GIOMARELLI,C.THOMAS,J.B.MCMAHON, JRNL AUTH 2 Z.DAUTER,B.R.O'KEEFE,A.WLODAWER JRNL TITL MONOMERIZATION OF VIRAL ENTRY INHIBITOR GRIFFITHSIN JRNL TITL 2 ELUCIDATES THE RELATIONSHIP BETWEEN MULTIVALENT BINDING TO JRNL TITL 3 CARBOHYDRATES AND ANTI-HIV ACTIVITY. JRNL REF STRUCTURE V. 18 1104 2010 JRNL REFN ISSN 0969-2126 JRNL PMID 20826337 JRNL DOI 10.1016/J.STR.2010.05.016 REMARK 2 REMARK 2 RESOLUTION. 0.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 65888 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1001 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4778 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 902 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 122 REMARK 3 SOLVENT ATOMS : 163 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.021 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.021 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.015 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.570 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.983 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1073 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 738 ; 0.009 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1444 ; 2.579 ; 2.064 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1815 ; 2.600 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 122 ; 7.435 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 40 ;38.641 ;23.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 153 ;10.569 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;15.749 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 179 ; 0.299 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1085 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 205 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 165 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 786 ; 0.231 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 542 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 567 ; 0.123 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 100 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.210 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 60 ; 0.241 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 29 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 635 ; 2.224 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 265 ; 2.317 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 970 ; 2.809 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 505 ; 4.018 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 474 ; 5.048 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1115 ; 2.413 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1022 ; 7.147 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LL2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057408. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66935 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.970 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.50700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.3 REMARK 200 STARTING MODEL: 3LKY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MIXTURE OF IMIDAZOLE, SODIUM REMARK 280 CACODYLATE, MES, AND BIS-TRIS, 0.1 M MIXTURE OF L-NA-GLUTAMATE, REMARK 280 ALANINE, GLYCINE, LYSINE-HCL, AND SERINE, 30% W/V PEG MME 550 REMARK 280 AND PEG 20000, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.25000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 45.25000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 13.90000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.25000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 6.95000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.25000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.85000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.25000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.25000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.90000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 45.25000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 20.85000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 45.25000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 6.95000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 1 OG REMARK 470 ARG A 5 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 MAN B 1 O5 MAN B 5 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 119 O HOH A 260 7554 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 29 CB - CG - CD1 ANGL. DEV. = -11.5 DEGREES REMARK 500 ARG A 80 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 SER A 96 N - CA - CB ANGL. DEV. = -9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 97 64.64 61.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEG A 136 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2NU5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A COMPLEX OF GRIFFITHSIN COCRYSTALLIZED WITH N- REMARK 900 ACETYLGLUCOSAMINE REMARK 900 RELATED ID: 2NUO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A COMPLEX OF GRIFFITHSIN WITH GLUCOSE REMARK 900 RELATED ID: 2HYQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A COMPLEX OF GRIFFITHSIN WITH 6ALPHA-MANNOBIOSE REMARK 900 RELATED ID: 2HYR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A COMPLEX OF GRIFFITHSIN WITH MALTOSE REMARK 900 RELATED ID: 2GTY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF UNLIGANDED GRIFFITHSIN REMARK 900 RELATED ID: 2GUC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A COMPLEX OF GRIFFITHSIN WITH MANNOSE AT 1.78 REMARK 900 A RESOLUTION. REMARK 900 RELATED ID: 2GUD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A COMPLEX OF GRIFFITHSIN WITH MANNOSE AT 0.94 REMARK 900 A RESOLUTION REMARK 900 RELATED ID: 2GUE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A COMPLEX OF GRIFFITHSIN WITH N- REMARK 900 ACETYLGLUCOSAMINE REMARK 900 RELATED ID: 2GUX RELATED DB: PDB REMARK 900 SELENOMETHIONINE DERIVATIVE OF GRIFFITHSIN REMARK 900 RELATED ID: 3LKY RELATED DB: PDB REMARK 900 MONOMERIC GRIFFITHSIN WITH A SINGLE GLY-SER INSERTION REMARK 900 RELATED ID: 3LL0 RELATED DB: PDB REMARK 900 MONOMERIC GRIFFITHSIN WITH TWO GLY-SER INSERTIONS REMARK 900 RELATED ID: 3LL1 RELATED DB: PDB REMARK 900 MONOMERIC GRIFFITHSIN WITH A SINGLE GLY-SER INSERTION AND MUTATIONS REMARK 900 TO REMOVE RESIDUAL SELF-ASSOCIATION DBREF 3LL2 A 1 121 UNP P84801 GRFIN_GRISQ 1 121 SEQADV 3LL2 SER A 2 UNP P84801 LEU 2 ENGINEERED MUTATION SEQADV 3LL2 GLY A 16A UNP P84801 INSERTION SEQADV 3LL2 SER A 16B UNP P84801 INSERTION SEQRES 1 A 123 SER SER THR HIS ARG LYS PHE GLY GLY SER GLY GLY SER SEQRES 2 A 123 PRO PHE SER GLY SER GLY LEU SER SER ILE ALA VAL ARG SEQRES 3 A 123 SER GLY SER TYR LEU ASP ALA ILE ILE ILE ASP GLY VAL SEQRES 4 A 123 HIS HIS GLY GLY SER GLY GLY ASN LEU SER PRO THR PHE SEQRES 5 A 123 THR PHE GLY SER GLY GLU TYR ILE SER ASN MET THR ILE SEQRES 6 A 123 ARG SER GLY ASP TYR ILE ASP ASN ILE SER PHE GLU THR SEQRES 7 A 123 ASN MET GLY ARG ARG PHE GLY PRO TYR GLY GLY SER GLY SEQRES 8 A 123 GLY SER ALA ASN THR LEU SER ASN VAL LYS VAL ILE GLN SEQRES 9 A 123 ILE ASN GLY SER ALA GLY ASP TYR LEU ASP SER LEU ASP SEQRES 10 A 123 ILE TYR TYR GLU GLN TYR HET MAN B 1 12 HET MAN B 2 11 HET MAN B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET MAN B 6 11 HET MAN B 7 11 HET MAN B 8 11 HET EDO A 130 4 HET EDO A 131 4 HET EDO A 132 4 HET EDO A 133 4 HET EDO A 134 4 HET EDO A 135 4 HET PEG A 136 5 HET EDO A 137 4 HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MAN 8(C6 H12 O6) FORMUL 3 EDO 7(C2 H6 O2) FORMUL 9 PEG C4 H10 O3 FORMUL 11 HOH *163(H2 O) SHEET 1 A 4 THR A 3 GLY A 8 0 SHEET 2 A 4 LEU A 111 GLN A 120 -1 O TYR A 118 N THR A 3 SHEET 3 A 4 VAL A 98 ALA A 107 -1 N GLN A 102 O TYR A 117 SHEET 4 A 4 SER A 13 SER A 16 -1 N SER A 13 O ALA A 107 SHEET 1 B 4 VAL A 37 GLY A 40 0 SHEET 2 B 4 LEU A 29 ILE A 34 -1 N ILE A 32 O HIS A 39 SHEET 3 B 4 SER A 20 SER A 25 -1 N ALA A 22 O ILE A 33 SHEET 4 B 4 ASN A 45 LEU A 46 -1 O ASN A 45 N SER A 25 SHEET 1 C 4 VAL A 37 GLY A 40 0 SHEET 2 C 4 LEU A 29 ILE A 34 -1 N ILE A 32 O HIS A 39 SHEET 3 C 4 SER A 20 SER A 25 -1 N ALA A 22 O ILE A 33 SHEET 4 C 4 PHE A 50 THR A 51 -1 O PHE A 50 N ILE A 21 SHEET 1 D 4 ARG A 81 GLY A 86 0 SHEET 2 D 4 ILE A 69 THR A 76 -1 N PHE A 74 O PHE A 82 SHEET 3 D 4 ILE A 58 SER A 65 -1 N ASN A 60 O GLU A 75 SHEET 4 D 4 SER A 91 SER A 96 -1 O LEU A 95 N MET A 61 LINK O3 MAN B 1 C1 MAN B 2 1555 1555 1.39 LINK O6 MAN B 1 C1 MAN B 5 1555 1555 1.39 LINK O2 MAN B 2 C1 MAN B 3 1555 1555 1.42 LINK O2 MAN B 3 C1 MAN B 4 1555 1555 1.40 LINK O3 MAN B 5 C1 MAN B 6 1555 1555 1.43 LINK O6 MAN B 5 C1 MAN B 8 1555 1555 1.42 LINK O2 MAN B 6 C1 MAN B 7 1555 1555 1.46 CISPEP 1 GLY A 83 PRO A 84 0 3.72 CRYST1 90.500 90.500 27.800 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011050 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011050 0.000000 0.00000 SCALE3 0.000000 0.000000 0.035971 0.00000