HEADER TRANSFERASE 11-NOV-09 3KMN TITLE CRYSTAL STRUCTURE OF THE HUMAN APO GST PI C47S/Y108V DOUBLE MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE S-TRANSFERASE P; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GST CLASS-PI, GSTP1-1; COMPND 5 EC: 2.5.1.18; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FAEES3, GST3, GSTP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TOP10; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSE420 KEYWDS TRANSFERASE, GLUTATHIONE, DETOXIFICATION, DOUBLE MUTANT, ETHACRYNIC KEYWDS 2 ACID, DIURETIC DRUG, DIMER INTERFACE EXPDTA X-RAY DIFFRACTION AUTHOR L.J.PARKER REVDAT 3 10-NOV-21 3KMN 1 REMARK SEQADV LINK REVDAT 2 01-NOV-17 3KMN 1 REMARK REVDAT 1 23-MAR-10 3KMN 0 JRNL AUTH I.QUESADA-SORIANO,L.J.PARKER,A.PRIMAVERA,J.WIELENS, JRNL AUTH 2 J.K.HOLIEN,J.M.CASAS-SOLVAS,A.VARGAS-BERENGUEL,A.AGUILERA, JRNL AUTH 3 N.NUCCETELLI,A.P.MAZZETTI,M.LO BELLO,M.W.PARKER, JRNL AUTH 4 L.GARCIA-FUENTES JRNL TITL DIURETIC DRUG BINDING TO HUMAN GLUTATHIONE TRANSFERASE P1-1: JRNL TITL 2 POTENTIAL ROLE OF CYS101 REVEALED IN THE DOUBLE MUTANT JRNL TITL 3 C47S/Y108V JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 39445 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2084 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2838 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3266 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 482 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.69000 REMARK 3 B22 (A**2) : -1.39000 REMARK 3 B33 (A**2) : -1.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.28000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.763 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3352 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4552 ; 1.352 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 420 ; 5.288 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;33.417 ;24.865 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 568 ;12.643 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.409 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 510 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2538 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1662 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2307 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 428 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 19 ; 0.111 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.137 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.185 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 5 ; 0.068 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2153 ; 0.805 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3342 ; 1.219 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1374 ; 2.083 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1208 ; 3.186 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KMN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056181. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.957 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39585 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : 0.27800 REMARK 200 FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7.5MG/ML C47S/Y108V GST, 22% (W/V) PEG REMARK 280 8000, 100MM MES PH 6.0, 350MM CA ACETATE, 10MM DTT, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 37.16000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.71500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 37.16000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.71500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 299 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 74 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 64 112.08 90.49 REMARK 500 ASN A 110 32.18 -163.96 REMARK 500 THR A 141 -97.88 -115.80 REMARK 500 GLN B 64 114.58 89.47 REMARK 500 ASN B 110 26.75 -163.86 REMARK 500 THR B 141 -100.72 -116.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 210 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 77 O REMARK 620 2 GLN A 147 OE1 144.2 REMARK 620 3 HOH A 215 O 91.4 89.7 REMARK 620 4 HOH A 217 O 73.0 142.3 96.6 REMARK 620 5 HOH A 293 O 77.4 66.9 87.8 150.1 REMARK 620 6 HOH A 310 O 91.1 89.4 176.8 82.2 94.7 REMARK 620 7 HOH A 416 O 140.4 75.4 85.4 68.2 141.6 91.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 211 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 171 OD1 REMARK 620 2 HOH A 272 O 104.9 REMARK 620 3 HOH A 356 O 73.2 79.2 REMARK 620 4 HOH A 389 O 74.6 83.1 137.6 REMARK 620 5 HOH A 395 O 144.0 89.4 142.6 74.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 212 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 171 OD2 REMARK 620 2 HOH A 227 O 93.5 REMARK 620 3 HOH A 357 O 94.2 55.0 REMARK 620 4 HOH A 413 O 111.5 67.7 118.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 212 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 77 O REMARK 620 2 GLN B 147 OE1 145.5 REMARK 620 3 HOH B 216 O 69.9 144.6 REMARK 620 4 HOH B 248 O 76.9 68.6 146.4 REMARK 620 5 HOH B 310 O 87.7 89.8 95.8 87.4 REMARK 620 6 HOH B 328 O 137.1 76.0 70.6 142.5 80.5 REMARK 620 7 HOH B 349 O 93.4 89.6 84.0 93.4 178.8 98.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 210 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 171 OD1 REMARK 620 2 HOH B 269 O 148.1 REMARK 620 3 HOH B 271 O 75.3 77.5 REMARK 620 4 HOH B 301 O 103.3 89.9 83.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 211 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 171 OD2 REMARK 620 2 HOH B 280 O 112.4 REMARK 620 3 HOH B 281 O 116.2 79.7 REMARK 620 4 HOH B 448 O 90.0 65.6 142.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 B 213 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KM6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN GST PI C47S/Y108V DOUBLE MUTANT IN REMARK 900 COMPLEX WITH THE ETHACRYNIC ACID-GLUTATHIONE CONJUGATE REMARK 900 RELATED ID: 3KMO RELATED DB: PDB DBREF 3KMN A 1 209 UNP P09211 GSTP1_HUMAN 2 210 DBREF 3KMN B 1 209 UNP P09211 GSTP1_HUMAN 2 210 SEQADV 3KMN SER A 47 UNP P09211 CYS 48 ENGINEERED MUTATION SEQADV 3KMN VAL A 108 UNP P09211 TYR 109 ENGINEERED MUTATION SEQADV 3KMN SER B 47 UNP P09211 CYS 48 ENGINEERED MUTATION SEQADV 3KMN VAL B 108 UNP P09211 TYR 109 ENGINEERED MUTATION SEQRES 1 A 209 PRO PRO TYR THR VAL VAL TYR PHE PRO VAL ARG GLY ARG SEQRES 2 A 209 CYS ALA ALA LEU ARG MET LEU LEU ALA ASP GLN GLY GLN SEQRES 3 A 209 SER TRP LYS GLU GLU VAL VAL THR VAL GLU THR TRP GLN SEQRES 4 A 209 GLU GLY SER LEU LYS ALA SER SER LEU TYR GLY GLN LEU SEQRES 5 A 209 PRO LYS PHE GLN ASP GLY ASP LEU THR LEU TYR GLN SER SEQRES 6 A 209 ASN THR ILE LEU ARG HIS LEU GLY ARG THR LEU GLY LEU SEQRES 7 A 209 TYR GLY LYS ASP GLN GLN GLU ALA ALA LEU VAL ASP MET SEQRES 8 A 209 VAL ASN ASP GLY VAL GLU ASP LEU ARG CYS LYS TYR ILE SEQRES 9 A 209 SER LEU ILE VAL THR ASN TYR GLU ALA GLY LYS ASP ASP SEQRES 10 A 209 TYR VAL LYS ALA LEU PRO GLY GLN LEU LYS PRO PHE GLU SEQRES 11 A 209 THR LEU LEU SER GLN ASN GLN GLY GLY LYS THR PHE ILE SEQRES 12 A 209 VAL GLY ASP GLN ILE SER PHE ALA ASP TYR ASN LEU LEU SEQRES 13 A 209 ASP LEU LEU LEU ILE HIS GLU VAL LEU ALA PRO GLY CYS SEQRES 14 A 209 LEU ASP ALA PHE PRO LEU LEU SER ALA TYR VAL GLY ARG SEQRES 15 A 209 LEU SER ALA ARG PRO LYS LEU LYS ALA PHE LEU ALA SER SEQRES 16 A 209 PRO GLU TYR VAL ASN LEU PRO ILE ASN GLY ASN GLY LYS SEQRES 17 A 209 GLN SEQRES 1 B 209 PRO PRO TYR THR VAL VAL TYR PHE PRO VAL ARG GLY ARG SEQRES 2 B 209 CYS ALA ALA LEU ARG MET LEU LEU ALA ASP GLN GLY GLN SEQRES 3 B 209 SER TRP LYS GLU GLU VAL VAL THR VAL GLU THR TRP GLN SEQRES 4 B 209 GLU GLY SER LEU LYS ALA SER SER LEU TYR GLY GLN LEU SEQRES 5 B 209 PRO LYS PHE GLN ASP GLY ASP LEU THR LEU TYR GLN SER SEQRES 6 B 209 ASN THR ILE LEU ARG HIS LEU GLY ARG THR LEU GLY LEU SEQRES 7 B 209 TYR GLY LYS ASP GLN GLN GLU ALA ALA LEU VAL ASP MET SEQRES 8 B 209 VAL ASN ASP GLY VAL GLU ASP LEU ARG CYS LYS TYR ILE SEQRES 9 B 209 SER LEU ILE VAL THR ASN TYR GLU ALA GLY LYS ASP ASP SEQRES 10 B 209 TYR VAL LYS ALA LEU PRO GLY GLN LEU LYS PRO PHE GLU SEQRES 11 B 209 THR LEU LEU SER GLN ASN GLN GLY GLY LYS THR PHE ILE SEQRES 12 B 209 VAL GLY ASP GLN ILE SER PHE ALA ASP TYR ASN LEU LEU SEQRES 13 B 209 ASP LEU LEU LEU ILE HIS GLU VAL LEU ALA PRO GLY CYS SEQRES 14 B 209 LEU ASP ALA PHE PRO LEU LEU SER ALA TYR VAL GLY ARG SEQRES 15 B 209 LEU SER ALA ARG PRO LYS LEU LYS ALA PHE LEU ALA SER SEQRES 16 B 209 PRO GLU TYR VAL ASN LEU PRO ILE ASN GLY ASN GLY LYS SEQRES 17 B 209 GLN HET CA A 210 1 HET CA A 211 1 HET CA A 212 1 HET CO3 A 213 4 HET PO4 A 214 5 HET CA B 210 1 HET CA B 211 1 HET CA B 212 1 HET CO3 B 213 4 HETNAM CA CALCIUM ION HETNAM CO3 CARBONATE ION HETNAM PO4 PHOSPHATE ION FORMUL 3 CA 6(CA 2+) FORMUL 6 CO3 2(C O3 2-) FORMUL 7 PO4 O4 P 3- FORMUL 12 HOH *482(H2 O) HELIX 1 1 ARG A 11 ARG A 13 5 3 HELIX 2 2 CYS A 14 GLN A 24 1 11 HELIX 3 3 THR A 34 GLY A 41 1 8 HELIX 4 4 GLY A 41 SER A 47 1 7 HELIX 5 5 GLN A 64 LEU A 76 1 13 HELIX 6 6 ASP A 82 ASN A 110 1 29 HELIX 7 7 ASN A 110 GLN A 135 1 26 HELIX 8 8 ASN A 136 LYS A 140 5 5 HELIX 9 9 SER A 149 ALA A 166 1 18 HELIX 10 10 PHE A 173 ALA A 185 1 13 HELIX 11 11 ARG A 186 SER A 195 1 10 HELIX 12 12 SER A 195 ASN A 200 1 6 HELIX 13 13 ARG B 11 ARG B 13 5 3 HELIX 14 14 CYS B 14 GLN B 24 1 11 HELIX 15 15 THR B 34 GLY B 41 1 8 HELIX 16 16 GLY B 41 SER B 47 1 7 HELIX 17 17 GLN B 64 GLY B 77 1 14 HELIX 18 18 ASP B 82 ASN B 110 1 29 HELIX 19 19 ASN B 110 GLN B 135 1 26 HELIX 20 20 ASN B 136 LYS B 140 5 5 HELIX 21 21 SER B 149 ALA B 166 1 18 HELIX 22 22 PHE B 173 ALA B 185 1 13 HELIX 23 23 ARG B 186 SER B 195 1 10 HELIX 24 24 SER B 195 ASN B 200 1 6 SHEET 1 A 4 LYS A 29 VAL A 32 0 SHEET 2 A 4 TYR A 3 TYR A 7 1 N VAL A 5 O GLU A 31 SHEET 3 A 4 LYS A 54 ASP A 57 -1 O LYS A 54 N VAL A 6 SHEET 4 A 4 LEU A 60 TYR A 63 -1 O LEU A 62 N PHE A 55 SHEET 1 B 4 LYS B 29 VAL B 32 0 SHEET 2 B 4 TYR B 3 TYR B 7 1 N VAL B 5 O GLU B 31 SHEET 3 B 4 LYS B 54 ASP B 57 -1 O LYS B 54 N VAL B 6 SHEET 4 B 4 LEU B 60 TYR B 63 -1 O LEU B 62 N PHE B 55 LINK O GLY A 77 CA CA A 210 1555 1555 2.31 LINK OE1 GLN A 147 CA CA A 210 1555 1555 2.46 LINK OD1 ASP A 171 CA CA A 211 1555 1555 2.34 LINK OD2 ASP A 171 CA CA A 212 1555 1555 2.27 LINK CA CA A 210 O HOH A 215 1555 1555 2.28 LINK CA CA A 210 O HOH A 217 1555 1555 2.38 LINK CA CA A 210 O HOH A 293 1555 1555 2.66 LINK CA CA A 210 O HOH A 310 1555 1555 2.27 LINK CA CA A 210 O HOH A 416 1555 1555 2.45 LINK CA CA A 211 O HOH A 272 1555 1555 2.34 LINK CA CA A 211 O HOH A 356 1555 1555 2.28 LINK CA CA A 211 O HOH A 389 1555 1555 2.44 LINK CA CA A 211 O HOH A 395 1555 1555 2.32 LINK CA CA A 212 O HOH A 227 1555 1555 2.41 LINK CA CA A 212 O HOH A 357 1555 1555 2.67 LINK CA CA A 212 O HOH A 413 1555 1555 2.49 LINK O GLY B 77 CA CA B 212 1555 1555 2.33 LINK OE1 GLN B 147 CA CA B 212 1555 1555 2.43 LINK OD1 ASP B 171 CA CA B 210 1555 1555 2.39 LINK OD2 ASP B 171 CA CA B 211 1555 1555 2.28 LINK CA CA B 210 O HOH B 269 1555 1555 2.36 LINK CA CA B 210 O HOH B 271 1555 1555 2.39 LINK CA CA B 210 O HOH B 301 1555 1555 2.38 LINK CA CA B 211 O HOH B 280 1555 1555 2.48 LINK CA CA B 211 O HOH B 281 1555 1555 2.36 LINK CA CA B 211 O HOH B 448 1555 1555 2.46 LINK CA CA B 212 O HOH B 216 1555 1555 2.47 LINK CA CA B 212 O HOH B 248 1555 1555 2.64 LINK CA CA B 212 O HOH B 310 1555 1555 2.22 LINK CA CA B 212 O HOH B 328 1555 1555 2.49 LINK CA CA B 212 O HOH B 349 1555 1555 2.24 CISPEP 1 PRO A 1 PRO A 2 0 2.91 CISPEP 2 LEU A 52 PRO A 53 0 4.77 CISPEP 3 PRO B 1 PRO B 2 0 2.67 CISPEP 4 LEU B 52 PRO B 53 0 4.75 SITE 1 AC1 7 GLY A 77 GLN A 147 HOH A 215 HOH A 217 SITE 2 AC1 7 HOH A 293 HOH A 310 HOH A 416 SITE 1 AC2 7 ASP A 171 HOH A 272 HOH A 356 HOH A 389 SITE 2 AC2 7 HOH A 395 GLU B 30 HOH B 308 SITE 1 AC3 7 ASP A 171 HOH A 227 HOH A 357 HOH A 413 SITE 2 AC3 7 TRP B 28 HOH B 289 HOH B 373 SITE 1 AC4 7 ARG A 13 GLN A 51 PRO A 53 GLN A 64 SITE 2 AC4 7 SER A 65 HOH A 399 HOH A 458 SITE 1 AC5 8 LYS A 127 GLU A 130 THR A 131 SER A 134 SITE 2 AC5 8 HOH A 266 PRO B 196 ASN B 200 HOH B 412 SITE 1 AC6 6 GLU A 30 HOH A 335 ASP B 171 HOH B 269 SITE 2 AC6 6 HOH B 271 HOH B 301 SITE 1 AC7 7 TRP A 28 HOH A 297 HOH A 341 ASP B 171 SITE 2 AC7 7 HOH B 280 HOH B 281 HOH B 448 SITE 1 AC8 7 GLY B 77 GLN B 147 HOH B 216 HOH B 248 SITE 2 AC8 7 HOH B 310 HOH B 328 HOH B 349 SITE 1 AC9 8 ARG B 13 GLN B 51 PRO B 53 GLN B 64 SITE 2 AC9 8 SER B 65 HOH B 293 HOH B 302 HOH B 358 CRYST1 74.320 89.430 69.200 90.00 89.98 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013455 0.000000 -0.000005 0.00000 SCALE2 0.000000 0.011182 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014451 0.00000