HEADER OXIDOREDUCTASE 14-APR-09 3H2Q TITLE HUMAN SOD1 H80R VARIANT, P21 CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN]; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SOD1; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: EGY118; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: YEP351-HSOD KEYWDS OXIDOREDUCTASE, HUMAN CU, ZN SUPEROXIDE DISMUTASE, ANTIOXIDANT, KEYWDS 2 METAL-BINDING, COPPER, ZINC, AMYOTROPHIC LATERAL SCLEROSIS, DISEASE KEYWDS 3 MUTATION, ACETYLATION, CYTOPLASM, DISULFIDE BOND, PHOSPHOPROTEIN, KEYWDS 4 UBL CONJUGATION EXPDTA X-RAY DIFFRACTION AUTHOR S.V.SEETHARAMAN,D.D.WINKLER,A.B.TAYLOR,X.CAO,L.J.WHITSON, AUTHOR 2 P.A.DOUCETTE,J.S.VALENTINE,M.C.CARROLL,V.C.CULOTTA,P.J.HART REVDAT 2 13-OCT-21 3H2Q 1 REMARK SEQADV LINK REVDAT 1 05-MAY-10 3H2Q 0 JRNL AUTH S.V.SEETHARAMAN,D.D.WINKLER,A.B.TAYLOR,X.CAO,L.J.WHITSON, JRNL AUTH 2 P.A.DOUCETTE,J.S.VALENTINE,M.C.CARROLL,V.C.CULOTTA,P.J.HART JRNL TITL STRUCTURES OF PATHOGENIC SOD1 MUTANTS H80R AND D124V: JRNL TITL 2 DISRUPTED ZINC-BINDING AND COMPROMISED POST-TRANSLATIONAL JRNL TITL 3 MODIFICATION BY THE COPPER CHAPERONE CCS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 41462 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 2052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.3373 - 4.5543 1.00 2800 155 0.1700 0.1808 REMARK 3 2 4.5543 - 3.6182 0.89 2495 134 0.1483 0.1815 REMARK 3 3 3.6182 - 3.1618 0.78 2158 114 0.1692 0.2029 REMARK 3 4 3.1618 - 2.8732 0.98 2750 156 0.1928 0.2554 REMARK 3 5 2.8732 - 2.6675 0.98 2700 147 0.2022 0.2602 REMARK 3 6 2.6675 - 2.5104 0.98 2730 136 0.1992 0.2540 REMARK 3 7 2.5104 - 2.3847 0.97 2697 146 0.1807 0.2020 REMARK 3 8 2.3847 - 2.2810 0.95 2653 130 0.1754 0.2331 REMARK 3 9 2.2810 - 2.1932 0.96 2653 143 0.1717 0.2508 REMARK 3 10 2.1932 - 2.1176 0.95 2633 160 0.1731 0.2247 REMARK 3 11 2.1176 - 2.0514 0.95 2616 124 0.1650 0.2242 REMARK 3 12 2.0514 - 1.9928 0.95 2640 135 0.1649 0.2246 REMARK 3 13 1.9928 - 1.9404 0.95 2624 113 0.1839 0.2246 REMARK 3 14 1.9404 - 1.8930 0.94 2656 139 0.1852 0.2682 REMARK 3 15 1.8930 - 1.8500 0.94 2605 120 0.1957 0.2464 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.42 REMARK 3 B_SOL : 59.55 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.90510 REMARK 3 B22 (A**2) : -4.68550 REMARK 3 B33 (A**2) : -4.24160 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.61440 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 NULL REMARK 3 ANGLE : 1.040 NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3H2Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052617. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-D REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CONFOCAL OPTICS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS VII REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41506 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.53100 REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1AZV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.3 M AMMONIUM SULFATE, 0.1 M TRIS, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 68.40050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -122.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 67 REMARK 465 SER A 68 REMARK 465 ARG A 69 REMARK 465 LYS A 70 REMARK 465 HIS A 71 REMARK 465 GLY A 72 REMARK 465 GLY A 73 REMARK 465 PRO A 74 REMARK 465 LYS A 75 REMARK 465 ASP A 76 REMARK 465 GLU A 77 REMARK 465 GLU A 78 REMARK 465 SER A 134 REMARK 465 THR A 135 REMARK 465 LYS A 136 REMARK 465 THR A 137 REMARK 465 GLY A 138 REMARK 465 LEU B 67 REMARK 465 SER B 68 REMARK 465 ARG B 69 REMARK 465 LYS B 70 REMARK 465 HIS B 71 REMARK 465 GLY B 72 REMARK 465 GLY B 73 REMARK 465 PRO B 74 REMARK 465 LYS B 75 REMARK 465 ASP B 76 REMARK 465 GLU B 77 REMARK 465 GLU B 78 REMARK 465 GLU B 132 REMARK 465 GLU B 133 REMARK 465 SER B 134 REMARK 465 THR B 135 REMARK 465 LYS B 136 REMARK 465 THR B 137 REMARK 465 GLY B 138 REMARK 465 ASN B 139 REMARK 465 LEU C 67 REMARK 465 SER C 68 REMARK 465 ARG C 69 REMARK 465 LYS C 70 REMARK 465 HIS C 71 REMARK 465 GLY C 72 REMARK 465 GLY C 73 REMARK 465 PRO C 74 REMARK 465 LYS C 75 REMARK 465 ASP C 76 REMARK 465 GLU C 77 REMARK 465 GLU C 78 REMARK 465 ARG C 79 REMARK 465 ASP C 125 REMARK 465 LEU C 126 REMARK 465 GLY C 127 REMARK 465 LYS C 128 REMARK 465 GLY C 129 REMARK 465 GLY C 130 REMARK 465 ASN C 131 REMARK 465 GLU C 132 REMARK 465 GLU C 133 REMARK 465 SER C 134 REMARK 465 THR C 135 REMARK 465 LYS C 136 REMARK 465 THR C 137 REMARK 465 GLY C 138 REMARK 465 ASN C 139 REMARK 465 ALA C 140 REMARK 465 LEU D 67 REMARK 465 SER D 68 REMARK 465 ARG D 69 REMARK 465 LYS D 70 REMARK 465 HIS D 71 REMARK 465 GLY D 72 REMARK 465 GLY D 73 REMARK 465 PRO D 74 REMARK 465 LYS D 75 REMARK 465 ASP D 76 REMARK 465 GLU D 77 REMARK 465 GLU D 78 REMARK 465 LEU D 126 REMARK 465 GLY D 127 REMARK 465 LYS D 128 REMARK 465 GLY D 129 REMARK 465 GLY D 130 REMARK 465 ASN D 131 REMARK 465 GLU D 132 REMARK 465 GLU D 133 REMARK 465 SER D 134 REMARK 465 THR D 135 REMARK 465 LYS D 136 REMARK 465 THR D 137 REMARK 465 GLY D 138 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 63 128.81 -39.33 REMARK 500 ASN B 65 87.35 -164.83 REMARK 500 ASN C 65 80.06 -161.03 REMARK 500 SER C 98 88.82 -159.04 REMARK 500 ASN D 65 88.68 -162.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 154 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 46 ND1 REMARK 620 2 HIS A 48 NE2 128.7 REMARK 620 3 HIS A 120 NE2 99.8 107.6 REMARK 620 4 SO4 A 155 O3 112.9 96.1 111.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 154 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 46 ND1 REMARK 620 2 HIS B 48 NE2 130.0 REMARK 620 3 HIS B 120 NE2 97.1 98.8 REMARK 620 4 SO4 B 155 S 104.4 118.0 101.7 REMARK 620 5 SO4 B 155 O4 96.7 107.1 131.3 29.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 154 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 48 NE2 REMARK 620 2 HIS C 63 NE2 110.1 REMARK 620 3 HIS C 120 NE2 82.2 162.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 154 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 46 ND1 REMARK 620 2 HIS D 48 NE2 127.8 REMARK 620 3 HIS D 120 NE2 102.0 104.1 REMARK 620 4 SO4 D 155 S 104.1 110.7 106.4 REMARK 620 5 SO4 D 155 O1 90.8 98.9 137.7 31.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 155 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3H2P RELATED DB: PDB REMARK 900 HUMAN SOD1 D124V VARIANT REMARK 900 RELATED ID: 3H2R RELATED DB: PDB REMARK 900 HUMAN SOD1 H80R VARIANT, P212121 CRYSTAL FORM DBREF 3H2Q A 1 153 UNP P00441 SODC_HUMAN 2 154 DBREF 3H2Q B 1 153 UNP P00441 SODC_HUMAN 2 154 DBREF 3H2Q C 1 153 UNP P00441 SODC_HUMAN 2 154 DBREF 3H2Q D 1 153 UNP P00441 SODC_HUMAN 2 154 SEQADV 3H2Q ARG A 80 UNP P00441 HIS 81 ENGINEERED MUTATION SEQADV 3H2Q ARG B 80 UNP P00441 HIS 81 ENGINEERED MUTATION SEQADV 3H2Q ARG C 80 UNP P00441 HIS 81 ENGINEERED MUTATION SEQADV 3H2Q ARG D 80 UNP P00441 HIS 81 ENGINEERED MUTATION SEQRES 1 A 153 ALA THR LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 A 153 VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN SEQRES 3 A 153 GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU THR SEQRES 4 A 153 GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY ASP SEQRES 5 A 153 ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 A 153 PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU GLU SEQRES 7 A 153 ARG ARG VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 A 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 A 153 SER LEU SER GLY ASP HIS CYS ILE ILE GLY ARG THR LEU SEQRES 10 A 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 A 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 A 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN SEQRES 1 B 153 ALA THR LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 B 153 VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN SEQRES 3 B 153 GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU THR SEQRES 4 B 153 GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY ASP SEQRES 5 B 153 ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 B 153 PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU GLU SEQRES 7 B 153 ARG ARG VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 B 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 B 153 SER LEU SER GLY ASP HIS CYS ILE ILE GLY ARG THR LEU SEQRES 10 B 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 B 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 B 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN SEQRES 1 C 153 ALA THR LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 C 153 VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN SEQRES 3 C 153 GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU THR SEQRES 4 C 153 GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY ASP SEQRES 5 C 153 ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 C 153 PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU GLU SEQRES 7 C 153 ARG ARG VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 C 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 C 153 SER LEU SER GLY ASP HIS CYS ILE ILE GLY ARG THR LEU SEQRES 10 C 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 C 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 C 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN SEQRES 1 D 153 ALA THR LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 D 153 VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN SEQRES 3 D 153 GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU THR SEQRES 4 D 153 GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY ASP SEQRES 5 D 153 ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 D 153 PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU GLU SEQRES 7 D 153 ARG ARG VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 D 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 D 153 SER LEU SER GLY ASP HIS CYS ILE ILE GLY ARG THR LEU SEQRES 10 D 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 D 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 D 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN HET ZN A 154 1 HET SO4 A 155 5 HET ZN B 154 1 HET SO4 B 155 10 HET ZN C 154 1 HET SO4 C 155 5 HET ZN D 154 1 HET SO4 D 155 5 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 5 ZN 4(ZN 2+) FORMUL 6 SO4 4(O4 S 2-) FORMUL 13 HOH *369(H2 O) HELIX 1 1 CYS A 57 GLY A 61 5 5 HELIX 2 2 ALA B 55 GLY B 61 5 7 HELIX 3 3 SER B 107 CYS B 111 5 5 HELIX 4 4 ALA C 55 GLY C 61 5 7 HELIX 5 5 SER C 107 CYS C 111 5 5 HELIX 6 6 CYS D 57 GLY D 61 5 5 HELIX 7 7 SER D 107 CYS D 111 5 5 SHEET 1 A 5 ALA A 95 ASP A 101 0 SHEET 2 A 5 VAL A 29 LYS A 36 -1 N ILE A 35 O ALA A 95 SHEET 3 A 5 GLN A 15 GLN A 22 -1 N ASN A 19 O TRP A 32 SHEET 4 A 5 THR A 2 LEU A 8 -1 N ALA A 4 O PHE A 20 SHEET 5 A 5 GLY A 150 ILE A 151 -1 O GLY A 150 N VAL A 5 SHEET 1 B 4 ASP A 83 ALA A 89 0 SHEET 2 B 4 GLY A 41 HIS A 48 -1 N HIS A 43 O VAL A 87 SHEET 3 B 4 THR A 116 HIS A 120 -1 O THR A 116 N HIS A 48 SHEET 4 B 4 ARG A 143 VAL A 148 -1 O ALA A 145 N VAL A 119 SHEET 1 C 5 ALA B 95 ASP B 101 0 SHEET 2 C 5 VAL B 29 LYS B 36 -1 N ILE B 35 O ALA B 95 SHEET 3 C 5 GLN B 15 GLU B 21 -1 N ASN B 19 O TRP B 32 SHEET 4 C 5 LYS B 3 LEU B 8 -1 N CYS B 6 O ILE B 18 SHEET 5 C 5 GLY B 150 ILE B 151 -1 O GLY B 150 N VAL B 5 SHEET 1 D 4 ASP B 83 ALA B 89 0 SHEET 2 D 4 GLY B 41 HIS B 48 -1 N GLY B 41 O ALA B 89 SHEET 3 D 4 THR B 116 HIS B 120 -1 O THR B 116 N HIS B 48 SHEET 4 D 4 ARG B 143 VAL B 148 -1 O GLY B 147 N LEU B 117 SHEET 1 E 5 ALA C 95 ASP C 101 0 SHEET 2 E 5 VAL C 29 LYS C 36 -1 N VAL C 31 O ILE C 99 SHEET 3 E 5 GLN C 15 GLN C 22 -1 N ASN C 19 O TRP C 32 SHEET 4 E 5 THR C 2 LEU C 8 -1 N ALA C 4 O PHE C 20 SHEET 5 E 5 GLY C 150 ALA C 152 -1 O GLY C 150 N VAL C 5 SHEET 1 F 4 ASP C 83 ALA C 89 0 SHEET 2 F 4 GLY C 41 HIS C 48 -1 N GLY C 41 O ALA C 89 SHEET 3 F 4 THR C 116 HIS C 120 -1 O THR C 116 N HIS C 48 SHEET 4 F 4 ARG C 143 VAL C 148 -1 O GLY C 147 N LEU C 117 SHEET 1 G 5 ALA D 95 ASP D 101 0 SHEET 2 G 5 VAL D 29 LYS D 36 -1 N ILE D 35 O ALA D 95 SHEET 3 G 5 GLN D 15 GLU D 21 -1 N ASN D 19 O TRP D 32 SHEET 4 G 5 LYS D 3 LEU D 8 -1 N ALA D 4 O PHE D 20 SHEET 5 G 5 GLY D 150 ILE D 151 -1 O GLY D 150 N VAL D 5 SHEET 1 H 4 ASP D 83 ALA D 89 0 SHEET 2 H 4 GLY D 41 HIS D 48 -1 N HIS D 43 O VAL D 87 SHEET 3 H 4 THR D 116 HIS D 120 -1 O THR D 116 N HIS D 48 SHEET 4 H 4 ARG D 143 VAL D 148 -1 O ALA D 145 N VAL D 119 SSBOND 1 CYS A 57 CYS A 146 1555 1555 2.42 SSBOND 2 CYS B 57 CYS B 146 1555 1555 2.47 SSBOND 3 CYS C 57 CYS C 146 1555 1555 2.51 SSBOND 4 CYS D 57 CYS D 146 1555 1555 2.56 LINK ND1 HIS A 46 ZN ZN A 154 1555 1555 2.08 LINK NE2 HIS A 48 ZN ZN A 154 1555 1555 2.14 LINK NE2 HIS A 120 ZN ZN A 154 1555 1555 2.06 LINK ZN ZN A 154 O3 SO4 A 155 1555 1555 1.92 LINK ND1 HIS B 46 ZN ZN B 154 1555 1555 2.30 LINK NE2 HIS B 48 ZN ZN B 154 1555 1555 2.27 LINK NE2 HIS B 120 ZN ZN B 154 1555 1555 2.11 LINK ZN ZN B 154 S ASO4 B 155 1555 1555 2.96 LINK ZN ZN B 154 O4 ASO4 B 155 1555 1555 2.47 LINK NE2 HIS C 48 ZN ZN C 154 1555 1555 2.55 LINK NE2 HIS C 63 ZN ZN C 154 1555 1555 2.31 LINK NE2 HIS C 120 ZN ZN C 154 1555 1555 2.18 LINK ND1 HIS D 46 ZN ZN D 154 1555 1555 2.19 LINK NE2 HIS D 48 ZN ZN D 154 1555 1555 2.12 LINK NE2 HIS D 120 ZN ZN D 154 1555 1555 2.14 LINK ZN ZN D 154 S SO4 D 155 1555 1555 2.78 LINK ZN ZN D 154 O1 SO4 D 155 1555 1555 2.24 SITE 1 AC1 4 HIS A 46 HIS A 48 HIS A 120 SO4 A 155 SITE 1 AC2 10 HIS A 46 HIS A 48 HIS A 63 ARG A 80 SITE 2 AC2 10 HIS A 120 ALA A 140 ZN A 154 HOH A 195 SITE 3 AC2 10 HOH A 309 LYS C 91 SITE 1 AC3 4 HIS B 46 HIS B 48 HIS B 120 SO4 B 155 SITE 1 AC4 9 LYS B 23 HIS B 46 HIS B 48 HIS B 63 SITE 2 AC4 9 HIS B 120 GLY B 141 ARG B 143 ZN B 154 SITE 3 AC4 9 HOH B 306 SITE 1 AC5 5 HIS C 46 HIS C 48 HIS C 63 HIS C 120 SITE 2 AC5 5 SO4 C 155 SITE 1 AC6 7 LYS C 23 HIS C 48 HIS C 63 HIS C 120 SITE 2 AC6 7 GLY C 141 ARG C 143 ZN C 154 SITE 1 AC7 4 HIS D 46 HIS D 48 HIS D 120 SO4 D 155 SITE 1 AC8 5 HIS D 46 HIS D 48 HIS D 63 HIS D 120 SITE 2 AC8 5 ZN D 154 CRYST1 35.240 136.801 56.364 90.00 104.58 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028377 0.000000 0.007379 0.00000 SCALE2 0.000000 0.007310 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018332 0.00000