HEADER APOPTOSIS 25-SEP-08 3EMW TITLE CRYSTAL STRUCTURE OF HUMAN SPLA/RYANODINE RECEPTOR DOMAIN AND SOCS BOX TITLE 2 CONTAINING 2 (SPSB2) IN COMPLEX WITH A 20-RESIDUE VASA PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPRY DOMAIN-CONTAINING SOCS BOX PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 26-219; COMPND 5 SYNONYM: SPSB2, SSB-2, GENE-RICH CLUSTER PROTEIN C9; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PEPTIDE (VASA); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPSB2, GRCC9, SSB2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: PEPTIDE SYNTHESIS KEYWDS APOPTOSIS NUCLEUS, APOPTOSIS, UBL CONJUGATION PATHWAYC, CL KEYWDS 2 TRANSCRIPTION REGULATION, TRANSCRIPTION, PHOSPHOPROTEIN, UBL KEYWDS 3 CONJUGATION PATHWAY, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 4 CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR P.FILIPPAKOPOULOS,T.SHARPE,T.KEATES,J.W.MURRAY,P.SAVITSKY,A.K.ROOS, AUTHOR 2 A.C.W.PIKE,F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT, AUTHOR 3 C.BOUNTRA,S.KNAPP,A.BULLOCK,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 13-JUL-11 3EMW 1 VERSN REVDAT 3 01-SEP-10 3EMW 1 JRNL REVDAT 2 24-FEB-09 3EMW 1 VERSN REVDAT 1 28-OCT-08 3EMW 0 JRNL AUTH P.FILIPPAKOPOULOS,A.LOW,T.D.SHARPE,J.UPPENBERG,S.YAO, JRNL AUTH 2 Z.KUANG,P.SAVITSKY,R.S.LEWIS,S.E.NICHOLSON,R.S.NORTON, JRNL AUTH 3 A.N.BULLOCK JRNL TITL STRUCTURAL BASIS FOR PAR-4 RECOGNITION BY THE SPRY DOMAIN- JRNL TITL 2 AND SOCS BOX-CONTAINING PROTEINS SPSB1, SPSB2, AND SPSB4. JRNL REF J.MOL.BIOL. V. 401 389 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20561531 JRNL DOI 10.1016/J.JMB.2010.06.017 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0066 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23073 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1239 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1665 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1579 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 138 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 25.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.27000 REMARK 3 B22 (A**2) : 0.97000 REMARK 3 B33 (A**2) : 0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.491 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1636 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1130 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2217 ; 1.548 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2732 ; 0.953 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 205 ; 6.419 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 74 ;36.320 ;23.378 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 245 ;11.816 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;14.460 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 228 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1854 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 333 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1022 ; 3.348 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 426 ; 1.174 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1621 ; 4.479 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 614 ; 6.890 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 596 ; 8.465 ;11.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 32 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3133 7.2607 31.4895 REMARK 3 T TENSOR REMARK 3 T11: 0.1238 T22: 0.1489 REMARK 3 T33: 0.2120 T12: -0.0202 REMARK 3 T13: -0.0178 T23: -0.0700 REMARK 3 L TENSOR REMARK 3 L11: 3.3010 L22: 11.4412 REMARK 3 L33: 6.9983 L12: -2.3859 REMARK 3 L13: -3.9708 L23: -0.0751 REMARK 3 S TENSOR REMARK 3 S11: -0.1075 S12: -0.1382 S13: 0.2597 REMARK 3 S21: 0.2783 S22: -0.0075 S23: -0.6335 REMARK 3 S31: -0.0947 S32: 1.0143 S33: 0.1150 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2665 24.3298 42.0027 REMARK 3 T TENSOR REMARK 3 T11: -0.0175 T22: 0.0018 REMARK 3 T33: 0.0084 T12: -0.0030 REMARK 3 T13: -0.0007 T23: 0.0341 REMARK 3 L TENSOR REMARK 3 L11: 1.8277 L22: 2.2487 REMARK 3 L33: 1.8307 L12: 0.5297 REMARK 3 L13: 0.2900 L23: 0.3678 REMARK 3 S TENSOR REMARK 3 S11: 0.0645 S12: -0.0857 S13: 0.0606 REMARK 3 S21: -0.1283 S22: 0.0472 S23: 0.0815 REMARK 3 S31: -0.1639 S32: -0.1821 S33: -0.1117 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 122 A 219 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7450 13.7838 43.9152 REMARK 3 T TENSOR REMARK 3 T11: -0.0117 T22: -0.0176 REMARK 3 T33: 0.0318 T12: -0.0280 REMARK 3 T13: -0.0419 T23: 0.0367 REMARK 3 L TENSOR REMARK 3 L11: 2.1064 L22: 1.8770 REMARK 3 L33: 1.9611 L12: -0.0929 REMARK 3 L13: -0.1442 L23: 0.1715 REMARK 3 S TENSOR REMARK 3 S11: 0.0445 S12: -0.1437 S13: -0.2906 REMARK 3 S21: 0.0437 S22: 0.0779 S23: -0.0404 REMARK 3 S31: 0.1755 S32: -0.0389 S33: -0.1224 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EMW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-SEP-08. REMARK 100 THE RCSB ID CODE IS RCSB049522. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.975653 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24366 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 42.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.61800 REMARK 200 R SYM FOR SHELL (I) : 0.61800 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2JK9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.178M NA/KPO4, 17.8% PEG3350, 8.88% REMARK 280 ETGLY, PH7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.23500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.29050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.98150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.29050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.23500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.98150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 VAL A 13 REMARK 465 ASP A 14 REMARK 465 LEU A 15 REMARK 465 GLY A 16 REMARK 465 THR A 17 REMARK 465 GLU A 18 REMARK 465 ASN A 19 REMARK 465 ILE B 191 REMARK 465 VAL B 192 REMARK 465 GLU B 193 REMARK 465 ASP B 194 REMARK 465 VAL B 195 REMARK 465 GLU B 196 REMARK 465 ARG B 197 REMARK 465 LYS B 198 REMARK 465 ARG B 199 REMARK 465 GLU B 200 REMARK 465 PHE B 201 REMARK 465 TYR B 202 REMARK 465 ILE B 203 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 22 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 98 CD OE1 OE2 REMARK 470 LYS A 145 CG CD CE NZ REMARK 470 GLN A 157 CD OE1 NE2 REMARK 470 GLU A 159 CD OE1 OE2 REMARK 470 ARG A 192 NE CZ NH1 NH2 REMARK 470 ASN B 190 CG OD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 315 O HOH A 324 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 52 59.13 -146.68 REMARK 500 ASP A 118 44.07 -106.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 20 TYR A 21 -123.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 221 DBREF 3EMW A 26 219 UNP Q99619 SPSB2_HUMAN 26 219 DBREF 3EMW B 184 203 PDB 3EMW 3EMW 184 203 SEQADV 3EMW MET A 3 UNP Q99619 EXPRESSION TAG SEQADV 3EMW HIS A 4 UNP Q99619 EXPRESSION TAG SEQADV 3EMW HIS A 5 UNP Q99619 EXPRESSION TAG SEQADV 3EMW HIS A 6 UNP Q99619 EXPRESSION TAG SEQADV 3EMW HIS A 7 UNP Q99619 EXPRESSION TAG SEQADV 3EMW HIS A 8 UNP Q99619 EXPRESSION TAG SEQADV 3EMW HIS A 9 UNP Q99619 EXPRESSION TAG SEQADV 3EMW SER A 10 UNP Q99619 EXPRESSION TAG SEQADV 3EMW SER A 11 UNP Q99619 EXPRESSION TAG SEQADV 3EMW GLY A 12 UNP Q99619 EXPRESSION TAG SEQADV 3EMW VAL A 13 UNP Q99619 EXPRESSION TAG SEQADV 3EMW ASP A 14 UNP Q99619 EXPRESSION TAG SEQADV 3EMW LEU A 15 UNP Q99619 EXPRESSION TAG SEQADV 3EMW GLY A 16 UNP Q99619 EXPRESSION TAG SEQADV 3EMW THR A 17 UNP Q99619 EXPRESSION TAG SEQADV 3EMW GLU A 18 UNP Q99619 EXPRESSION TAG SEQADV 3EMW ASN A 19 UNP Q99619 EXPRESSION TAG SEQADV 3EMW LEU A 20 UNP Q99619 EXPRESSION TAG SEQADV 3EMW TYR A 21 UNP Q99619 EXPRESSION TAG SEQADV 3EMW PHE A 22 UNP Q99619 EXPRESSION TAG SEQADV 3EMW GLN A 23 UNP Q99619 EXPRESSION TAG SEQADV 3EMW SER A 24 UNP Q99619 EXPRESSION TAG SEQADV 3EMW MET A 25 UNP Q99619 EXPRESSION TAG SEQRES 1 A 217 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 217 GLY THR GLU ASN LEU TYR PHE GLN SER MET PRO GLU GLY SEQRES 3 A 217 LEU GLU GLU LEU LEU SER ALA PRO PRO PRO ASP LEU GLY SEQRES 4 A 217 ALA GLN ARG ARG HIS GLY TRP ASN PRO LYS ASP CYS SER SEQRES 5 A 217 GLU ASN ILE GLU VAL LYS GLU GLY GLY LEU TYR PHE GLU SEQRES 6 A 217 ARG ARG PRO VAL ALA GLN SER THR ASP GLY ALA ARG GLY SEQRES 7 A 217 LYS ARG GLY TYR SER ARG GLY LEU HIS ALA TRP GLU ILE SEQRES 8 A 217 SER TRP PRO LEU GLU GLN ARG GLY THR HIS ALA VAL VAL SEQRES 9 A 217 GLY VAL ALA THR ALA LEU ALA PRO LEU GLN THR ASP HIS SEQRES 10 A 217 TYR ALA ALA LEU LEU GLY SER ASN SER GLU SER TRP GLY SEQRES 11 A 217 TRP ASP ILE GLY ARG GLY LYS LEU TYR HIS GLN SER LYS SEQRES 12 A 217 GLY PRO GLY ALA PRO GLN TYR PRO ALA GLY THR GLN GLY SEQRES 13 A 217 GLU GLN LEU GLU VAL PRO GLU ARG LEU LEU VAL VAL LEU SEQRES 14 A 217 ASP MET GLU GLU GLY THR LEU GLY TYR ALA ILE GLY GLY SEQRES 15 A 217 THR TYR LEU GLY PRO ALA PHE ARG GLY LEU LYS GLY ARG SEQRES 16 A 217 THR LEU TYR PRO ALA VAL SER ALA VAL TRP GLY GLN CYS SEQRES 17 A 217 GLN VAL ARG ILE ARG TYR LEU GLY GLU SEQRES 1 B 20 ASP ILE ASN ASN ASN ASN ASN ILE VAL GLU ASP VAL GLU SEQRES 2 B 20 ARG LYS ARG GLU PHE TYR ILE HET EDO A 1 4 HET EDO A 2 4 HET EDO A 220 4 HET EDO A 221 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 4(C2 H6 O2) FORMUL 7 HOH *138(H2 O) HELIX 1 1 LEU A 20 MET A 25 5 6 HELIX 2 2 GLY A 28 ALA A 35 1 8 HELIX 3 3 ASP A 39 HIS A 46 1 8 HELIX 4 4 GLU A 61 GLY A 63 5 3 HELIX 5 5 PRO A 96 ARG A 100 5 5 SHEET 1 A 3 TRP A 48 CYS A 53 0 SHEET 2 A 3 THR A 75 GLY A 80 -1 O ARG A 79 N ASN A 49 SHEET 3 A 3 GLN A 116 THR A 117 -1 O THR A 117 N THR A 75 SHEET 1 B 6 TRP A 48 CYS A 53 0 SHEET 2 B 6 THR A 75 GLY A 80 -1 O ARG A 79 N ASN A 49 SHEET 3 B 6 TYR A 200 ALA A 205 -1 O ALA A 205 N ASP A 76 SHEET 4 B 6 VAL A 105 ALA A 109 -1 N ALA A 109 O TYR A 200 SHEET 5 B 6 SER A 130 ASP A 134 -1 O TRP A 133 N VAL A 106 SHEET 6 B 6 LEU A 140 TYR A 141 -1 O TYR A 141 N GLY A 132 SHEET 1 C 7 ILE A 57 LYS A 60 0 SHEET 2 C 7 TYR A 65 ARG A 68 -1 O TYR A 65 N LYS A 60 SHEET 3 C 7 GLN A 211 GLY A 218 -1 O VAL A 212 N PHE A 66 SHEET 4 C 7 LEU A 88 SER A 94 -1 N ALA A 90 O GLY A 218 SHEET 5 C 7 ARG A 166 ASP A 172 -1 O LEU A 171 N HIS A 89 SHEET 6 C 7 THR A 177 ILE A 182 -1 O GLY A 179 N VAL A 170 SHEET 7 C 7 THR A 185 PHE A 191 -1 O ALA A 190 N LEU A 178 CISPEP 1 TYR A 152 PRO A 153 0 2.62 CISPEP 2 GLY A 218 GLU A 219 0 3.87 SITE 1 AC1 5 ARG A 100 ILE A 135 GLU A 162 VAL A 163 SITE 2 AC1 5 HOH A 309 SITE 1 AC2 4 ASP A 52 GLY A 183 TYR A 200 HOH A 232 SITE 1 AC3 4 TYR A 65 GLN A 211 ARG A 213 HOH A 238 SITE 1 AC4 5 LEU A 97 GLU A 162 VAL A 163 PRO A 164 SITE 2 AC4 5 HOH A 235 CRYST1 34.470 61.963 118.581 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029010 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016139 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008433 0.00000