HEADER TRANSFERASE 07-APR-08 3CRK TITLE CRYSTAL STRUCTURE OF THE PDHK2-L2 COMPLEX. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRUVATE DEHYDROGENASE [LIPOAMIDE] KINASE ISOZYME 2, COMPND 3 MITOCHONDRIAL; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: PYRUVATE DEHYDROGENASE KINASE ISOFORM 2, PDK P45; COMPND 6 EC: 2.7.11.2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT OF COMPND 10 PYRUVATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: UNP RESIDUES 181-267; COMPND 13 SYNONYM: PYRUVATE DEHYDROGENASE COMPLEX E2 SUBUNIT, PDCE2, E2, COMPND 14 DIHYDROLIPOAMIDE S- ACETYLTRANSFERASE COMPONENT OF PYRUVATE COMPND 15 DEHYDROGENASE COMPLEX, PDC- E2, 70 KDA MITOCHONDRIAL AUTOANTIGEN OF COMPND 16 PRIMARY BILIARY CIRRHOSIS, PBC, M2 ANTIGEN COMPLEX 70 KDA SUBUNIT; COMPND 17 EC: 2.3.1.12; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: PDK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: DLAT, DLTA; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS PYRUVATE DEHYDROGENASE KINASE ISOZYME 2, TRANSFERASE, GLUCOSE KEYWDS 2 METABOLISM, KINASE, MITOCHONDRION, CARBOHYDRATE METABOLISM, TRANSIT KEYWDS 3 PEPTIDE, ACYLTRANSFERASE, GLYCOLYSIS, LIPOYL EXPDTA X-RAY DIFFRACTION AUTHOR T.J.GREEN,K.M.POPOV,M.LUO,A.GRIGORIAN,A.KLYUYEVA,A.TUGANOVA REVDAT 5 25-OCT-17 3CRK 1 REMARK REVDAT 4 13-JUL-11 3CRK 1 VERSN REVDAT 3 24-FEB-09 3CRK 1 VERSN REVDAT 2 17-JUN-08 3CRK 1 JRNL REVDAT 1 29-APR-08 3CRK 0 JRNL AUTH T.GREEN,A.GRIGORIAN,A.KLYUYEVA,A.TUGANOVA,M.LUO,K.M.POPOV JRNL TITL STRUCTURAL AND FUNCTIONAL INSIGHTS INTO THE MOLECULAR JRNL TITL 2 MECHANISMS RESPONSIBLE FOR THE REGULATION OF PYRUVATE JRNL TITL 3 DEHYDROGENASE KINASE 2. JRNL REF J.BIOL.CHEM. V. 283 15789 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18387944 JRNL DOI 10.1074/JBC.M800311200 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 50377 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2551 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2621 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7221 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 267 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : 0.72000 REMARK 3 B33 (A**2) : -0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.321 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.237 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.907 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7385 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10012 ; 1.009 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 897 ; 5.081 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 326 ;33.318 ;24.479 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1280 ;15.460 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;14.244 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1126 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5526 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3447 ; 0.190 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5007 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 409 ; 0.135 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.232 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 60 ; 0.108 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.139 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4528 ; 0.285 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7365 ; 0.554 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2899 ; 0.933 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2647 ; 1.522 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 27 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 94 REMARK 3 ORIGIN FOR THE GROUP (A): 68.2863 94.8243 70.4345 REMARK 3 T TENSOR REMARK 3 T11: 0.2483 T22: -0.0678 REMARK 3 T33: -0.2221 T12: -0.0255 REMARK 3 T13: 0.0283 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 2.0731 L22: 2.4250 REMARK 3 L33: 4.0760 L12: -0.9397 REMARK 3 L13: -0.6856 L23: 0.5956 REMARK 3 S TENSOR REMARK 3 S11: -0.0964 S12: -0.2813 S13: -0.1200 REMARK 3 S21: 0.3376 S22: -0.0126 S23: -0.1908 REMARK 3 S31: 0.3468 S32: -0.0016 S33: 0.1090 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 95 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): 62.2031 99.8754 71.6243 REMARK 3 T TENSOR REMARK 3 T11: 0.3058 T22: 0.1141 REMARK 3 T33: -0.2576 T12: -0.0203 REMARK 3 T13: 0.0380 T23: -0.0354 REMARK 3 L TENSOR REMARK 3 L11: 2.7407 L22: 5.7127 REMARK 3 L33: 3.2633 L12: 0.7129 REMARK 3 L13: 0.1997 L23: -0.5329 REMARK 3 S TENSOR REMARK 3 S11: -0.1031 S12: -0.2452 S13: 0.1613 REMARK 3 S21: 0.7638 S22: -0.0107 S23: 0.0212 REMARK 3 S31: -0.0776 S32: -0.4415 S33: 0.1139 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 151 A 175 REMARK 3 ORIGIN FOR THE GROUP (A): 64.2354 99.1400 62.7788 REMARK 3 T TENSOR REMARK 3 T11: 0.2364 T22: -0.0237 REMARK 3 T33: -0.2093 T12: -0.0471 REMARK 3 T13: 0.0272 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 3.0046 L22: 8.2455 REMARK 3 L33: 1.7007 L12: 2.3850 REMARK 3 L13: 1.1393 L23: -0.0385 REMARK 3 S TENSOR REMARK 3 S11: -0.0202 S12: -0.1997 S13: 0.0202 REMARK 3 S21: 0.3554 S22: -0.0713 S23: 0.1399 REMARK 3 S31: 0.2139 S32: -0.2880 S33: 0.0915 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 176 A 188 REMARK 3 ORIGIN FOR THE GROUP (A): 52.1025 84.3319 56.6151 REMARK 3 T TENSOR REMARK 3 T11: 0.3483 T22: -0.0037 REMARK 3 T33: 0.1479 T12: -0.2998 REMARK 3 T13: 0.0052 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 15.2390 L22: 12.2884 REMARK 3 L33: 61.4692 L12: -5.4731 REMARK 3 L13: 7.2411 L23: -23.0304 REMARK 3 S TENSOR REMARK 3 S11: 0.2461 S12: 0.0053 S13: -0.6162 REMARK 3 S21: -0.5339 S22: 0.7418 S23: 0.5046 REMARK 3 S31: 1.5328 S32: -2.9983 S33: -0.9879 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 189 A 249 REMARK 3 ORIGIN FOR THE GROUP (A): 52.1275 101.1740 43.2186 REMARK 3 T TENSOR REMARK 3 T11: -0.0518 T22: -0.0015 REMARK 3 T33: -0.0312 T12: -0.1369 REMARK 3 T13: 0.0781 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 1.9676 L22: 3.5117 REMARK 3 L33: 2.3063 L12: -0.1447 REMARK 3 L13: -0.2942 L23: -1.1424 REMARK 3 S TENSOR REMARK 3 S11: -0.0172 S12: 0.1420 S13: 0.0106 REMARK 3 S21: 0.2661 S22: 0.1661 S23: 0.6189 REMARK 3 S31: 0.3363 S32: -0.5103 S33: -0.1489 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 250 A 303 REMARK 3 ORIGIN FOR THE GROUP (A): 57.3489 113.5643 41.4598 REMARK 3 T TENSOR REMARK 3 T11: -0.1874 T22: -0.0122 REMARK 3 T33: -0.0774 T12: -0.0382 REMARK 3 T13: 0.0513 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 1.3037 L22: 4.9737 REMARK 3 L33: 1.4697 L12: 0.1604 REMARK 3 L13: 0.1594 L23: -1.0095 REMARK 3 S TENSOR REMARK 3 S11: 0.0396 S12: -0.0042 S13: 0.3373 REMARK 3 S21: 0.3288 S22: 0.0586 S23: 0.2905 REMARK 3 S31: 0.0432 S32: -0.2292 S33: -0.0981 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 304 A 312 REMARK 3 ORIGIN FOR THE GROUP (A): 65.0066 118.5349 58.8934 REMARK 3 T TENSOR REMARK 3 T11: 0.4176 T22: -0.1853 REMARK 3 T33: -0.0463 T12: 0.0761 REMARK 3 T13: -0.0198 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 21.7403 L22: 21.3881 REMARK 3 L33: 23.3073 L12: 1.1992 REMARK 3 L13: 12.5816 L23: 19.1793 REMARK 3 S TENSOR REMARK 3 S11: -0.5744 S12: -1.2691 S13: 1.8735 REMARK 3 S21: 0.0461 S22: -0.4850 S23: 0.9327 REMARK 3 S31: -3.3832 S32: -0.7385 S33: 1.0594 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 327 A 379 REMARK 3 ORIGIN FOR THE GROUP (A): 68.2386 104.1665 50.9949 REMARK 3 T TENSOR REMARK 3 T11: -0.0164 T22: -0.1255 REMARK 3 T33: -0.1970 T12: -0.0438 REMARK 3 T13: 0.0325 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 1.0958 L22: 1.7639 REMARK 3 L33: 1.8507 L12: -0.3904 REMARK 3 L13: 0.2492 L23: -0.8490 REMARK 3 S TENSOR REMARK 3 S11: -0.0302 S12: -0.0110 S13: 0.0894 REMARK 3 S21: 0.2559 S22: -0.1034 S23: -0.0951 REMARK 3 S31: 0.2703 S32: 0.0219 S33: 0.1335 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 380 A 402 REMARK 3 ORIGIN FOR THE GROUP (A): 84.5368 126.0519 55.2542 REMARK 3 T TENSOR REMARK 3 T11: -0.1239 T22: -0.1594 REMARK 3 T33: 0.0523 T12: 0.0167 REMARK 3 T13: 0.0253 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 2.8484 L22: 3.2918 REMARK 3 L33: 1.7870 L12: 3.0585 REMARK 3 L13: -1.0614 L23: -1.2441 REMARK 3 S TENSOR REMARK 3 S11: 0.2188 S12: -0.2319 S13: 0.3243 REMARK 3 S21: 1.1001 S22: -0.0919 S23: 0.0276 REMARK 3 S31: -0.3858 S32: -0.1487 S33: -0.1269 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 12 B 43 REMARK 3 ORIGIN FOR THE GROUP (A): 96.4091 133.7844 43.7302 REMARK 3 T TENSOR REMARK 3 T11: -0.1521 T22: -0.1562 REMARK 3 T33: 0.2023 T12: -0.1033 REMARK 3 T13: -0.0304 T23: -0.0458 REMARK 3 L TENSOR REMARK 3 L11: 10.3975 L22: 3.4130 REMARK 3 L33: 3.0889 L12: -2.6726 REMARK 3 L13: 0.2301 L23: 0.7701 REMARK 3 S TENSOR REMARK 3 S11: -0.2259 S12: -0.1558 S13: 0.8013 REMARK 3 S21: 0.1359 S22: 0.1958 S23: -0.4553 REMARK 3 S31: -0.4007 S32: 0.1434 S33: 0.0301 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 44 B 94 REMARK 3 ORIGIN FOR THE GROUP (A): 101.9659 124.7312 41.0198 REMARK 3 T TENSOR REMARK 3 T11: -0.2151 T22: 0.0288 REMARK 3 T33: 0.2343 T12: -0.0131 REMARK 3 T13: -0.0821 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 2.5791 L22: 4.7670 REMARK 3 L33: 1.9096 L12: 1.8210 REMARK 3 L13: -0.7726 L23: 0.4904 REMARK 3 S TENSOR REMARK 3 S11: 0.0701 S12: 0.0261 S13: 0.0076 REMARK 3 S21: 0.2551 S22: 0.0175 S23: -0.6544 REMARK 3 S31: -0.0463 S32: 0.4344 S33: -0.0876 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 95 B 151 REMARK 3 ORIGIN FOR THE GROUP (A): 101.4917 122.8953 36.1170 REMARK 3 T TENSOR REMARK 3 T11: -0.2175 T22: 0.1436 REMARK 3 T33: 0.2584 T12: 0.0453 REMARK 3 T13: -0.0255 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 2.9138 L22: 7.8535 REMARK 3 L33: 2.7428 L12: 1.4696 REMARK 3 L13: -0.0902 L23: -1.1637 REMARK 3 S TENSOR REMARK 3 S11: -0.0206 S12: 0.3276 S13: -0.0798 REMARK 3 S21: -0.1137 S22: 0.0652 S23: -0.7484 REMARK 3 S31: 0.1272 S32: 0.3094 S33: -0.0446 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 152 B 190 REMARK 3 ORIGIN FOR THE GROUP (A): 91.9849 126.8604 35.0788 REMARK 3 T TENSOR REMARK 3 T11: -0.1988 T22: -0.0393 REMARK 3 T33: 0.1096 T12: -0.0008 REMARK 3 T13: -0.0015 T23: 0.0588 REMARK 3 L TENSOR REMARK 3 L11: 1.1011 L22: 8.5116 REMARK 3 L33: 2.4888 L12: -0.9671 REMARK 3 L13: 1.1991 L23: -3.0509 REMARK 3 S TENSOR REMARK 3 S11: 0.0561 S12: 0.2807 S13: 0.1272 REMARK 3 S21: -0.1786 S22: -0.1299 S23: -0.4845 REMARK 3 S31: -0.0940 S32: 0.2088 S33: 0.0738 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 191 B 247 REMARK 3 ORIGIN FOR THE GROUP (A): 74.0272 121.7259 22.8501 REMARK 3 T TENSOR REMARK 3 T11: -0.0955 T22: 0.0266 REMARK 3 T33: -0.0898 T12: -0.0304 REMARK 3 T13: 0.0277 T23: 0.1284 REMARK 3 L TENSOR REMARK 3 L11: 2.2496 L22: 4.4959 REMARK 3 L33: 2.1053 L12: 0.9696 REMARK 3 L13: 0.0450 L23: 0.2652 REMARK 3 S TENSOR REMARK 3 S11: -0.2206 S12: 0.5299 S13: 0.3648 REMARK 3 S21: -0.6926 S22: 0.1598 S23: -0.1826 REMARK 3 S31: -0.0659 S32: -0.1517 S33: 0.0608 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 248 B 303 REMARK 3 ORIGIN FOR THE GROUP (A): 72.4373 109.7879 28.1511 REMARK 3 T TENSOR REMARK 3 T11: -0.1443 T22: -0.0169 REMARK 3 T33: -0.1795 T12: -0.0249 REMARK 3 T13: 0.0444 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 0.9024 L22: 4.3810 REMARK 3 L33: 2.2880 L12: 0.9126 REMARK 3 L13: -0.0264 L23: 0.0290 REMARK 3 S TENSOR REMARK 3 S11: -0.1039 S12: 0.2239 S13: 0.0461 REMARK 3 S21: -0.2401 S22: -0.0706 S23: -0.2622 REMARK 3 S31: 0.3390 S32: -0.0795 S33: 0.1745 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 304 B 312 REMARK 3 ORIGIN FOR THE GROUP (A): 88.8693 104.7012 37.3823 REMARK 3 T TENSOR REMARK 3 T11: -0.0935 T22: -0.1401 REMARK 3 T33: 0.3090 T12: 0.0037 REMARK 3 T13: -0.0641 T23: -0.1841 REMARK 3 L TENSOR REMARK 3 L11: 49.2872 L22: 14.9798 REMARK 3 L33: 17.2736 L12: -15.2476 REMARK 3 L13: 13.5386 L23: -5.8831 REMARK 3 S TENSOR REMARK 3 S11: 0.6836 S12: 2.1025 S13: -4.4185 REMARK 3 S21: -0.7016 S22: -0.2095 S23: -0.3847 REMARK 3 S31: 1.6845 S32: 1.1949 S33: -0.4741 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 327 B 380 REMARK 3 ORIGIN FOR THE GROUP (A): 80.8652 118.7432 40.5024 REMARK 3 T TENSOR REMARK 3 T11: -0.2074 T22: -0.1233 REMARK 3 T33: -0.0969 T12: 0.0090 REMARK 3 T13: -0.0211 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 2.0783 L22: 1.8759 REMARK 3 L33: 1.1137 L12: 1.0826 REMARK 3 L13: 0.2499 L23: 0.6984 REMARK 3 S TENSOR REMARK 3 S11: 0.0447 S12: -0.0315 S13: 0.1199 REMARK 3 S21: 0.2335 S22: -0.0750 S23: -0.1263 REMARK 3 S31: 0.1665 S32: 0.0329 S33: 0.0303 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 381 B 404 REMARK 3 ORIGIN FOR THE GROUP (A): 80.4227 93.1391 56.4518 REMARK 3 T TENSOR REMARK 3 T11: 0.2427 T22: -0.2019 REMARK 3 T33: 0.0915 T12: -0.0576 REMARK 3 T13: 0.1508 T23: -0.0426 REMARK 3 L TENSOR REMARK 3 L11: 7.9371 L22: 5.1774 REMARK 3 L33: 2.3287 L12: 5.6815 REMARK 3 L13: -1.3305 L23: -2.4815 REMARK 3 S TENSOR REMARK 3 S11: -0.6035 S12: 0.3652 S13: -1.8673 REMARK 3 S21: -0.0839 S22: 0.4465 S23: -1.9043 REMARK 3 S31: 0.5270 S32: 0.2832 S33: 0.1570 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 128 C 136 REMARK 3 ORIGIN FOR THE GROUP (A): 102.9408 88.8971 74.7950 REMARK 3 T TENSOR REMARK 3 T11: 0.0030 T22: -0.0012 REMARK 3 T33: -0.0010 T12: 0.0050 REMARK 3 T13: 0.0025 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 186.4970 L22: 36.7867 REMARK 3 L33: 7.1917 L12: 41.6152 REMARK 3 L13: -20.5483 L23: -16.2262 REMARK 3 S TENSOR REMARK 3 S11: 2.8695 S12: -1.2722 S13: -2.1840 REMARK 3 S21: 2.2623 S22: -3.3671 S23: -0.6417 REMARK 3 S31: 2.0695 S32: -1.7364 S33: 0.4977 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 137 C 162 REMARK 3 ORIGIN FOR THE GROUP (A): 90.6382 89.6459 63.2552 REMARK 3 T TENSOR REMARK 3 T11: -0.1089 T22: 0.0272 REMARK 3 T33: -0.0652 T12: 0.0129 REMARK 3 T13: 0.2465 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 5.4300 L22: 3.1556 REMARK 3 L33: 3.3436 L12: -3.3198 REMARK 3 L13: 1.6016 L23: -2.7772 REMARK 3 S TENSOR REMARK 3 S11: -0.8479 S12: 0.3083 S13: -0.2073 REMARK 3 S21: -0.1931 S22: -0.6671 S23: 0.3845 REMARK 3 S31: 0.2031 S32: 1.2656 S33: 1.5150 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 163 C 181 REMARK 3 ORIGIN FOR THE GROUP (A): 84.8870 90.7214 62.2867 REMARK 3 T TENSOR REMARK 3 T11: -0.1103 T22: -0.4969 REMARK 3 T33: -0.2695 T12: 0.1818 REMARK 3 T13: 0.1165 T23: 0.1235 REMARK 3 L TENSOR REMARK 3 L11: 39.8504 L22: 8.2600 REMARK 3 L33: 3.2533 L12: 14.0728 REMARK 3 L13: 5.7501 L23: -0.7933 REMARK 3 S TENSOR REMARK 3 S11: -1.3253 S12: -0.9779 S13: -0.5013 REMARK 3 S21: -0.3123 S22: -0.1398 S23: -0.5896 REMARK 3 S31: 0.4089 S32: 0.1045 S33: 1.4651 REMARK 3 REMARK 3 TLS GROUP : 22 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 182 C 199 REMARK 3 ORIGIN FOR THE GROUP (A): 96.3471 86.0684 63.8504 REMARK 3 T TENSOR REMARK 3 T11: 0.0396 T22: 0.0264 REMARK 3 T33: 0.0193 T12: 0.1095 REMARK 3 T13: 0.0930 T23: 0.0581 REMARK 3 L TENSOR REMARK 3 L11: 5.6181 L22: 12.9191 REMARK 3 L33: 1.3094 L12: 4.7688 REMARK 3 L13: 2.2873 L23: 0.1098 REMARK 3 S TENSOR REMARK 3 S11: 0.5433 S12: -0.8213 S13: -0.7346 REMARK 3 S21: 0.8026 S22: -2.0519 S23: -0.6948 REMARK 3 S31: 0.2688 S32: -0.3307 S33: 1.5087 REMARK 3 REMARK 3 TLS GROUP : 23 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 200 C 214 REMARK 3 ORIGIN FOR THE GROUP (A): 101.9186 90.5081 69.8656 REMARK 3 T TENSOR REMARK 3 T11: -0.0043 T22: 0.0016 REMARK 3 T33: -0.0006 T12: -0.0005 REMARK 3 T13: -0.0051 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 32.1918 L22: 9.8000 REMARK 3 L33: 12.4642 L12: 4.1927 REMARK 3 L13: -13.5698 L23: -9.6673 REMARK 3 S TENSOR REMARK 3 S11: 0.6728 S12: -1.8738 S13: 0.6061 REMARK 3 S21: 2.8186 S22: -0.1628 S23: -0.1411 REMARK 3 S31: -0.1066 S32: 1.0926 S33: -0.5101 REMARK 3 REMARK 3 TLS GROUP : 24 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 137 D 163 REMARK 3 ORIGIN FOR THE GROUP (A): 90.7444 132.9329 63.6620 REMARK 3 T TENSOR REMARK 3 T11: -0.1259 T22: -0.4093 REMARK 3 T33: -0.3897 T12: -0.0477 REMARK 3 T13: -0.0643 T23: -0.1401 REMARK 3 L TENSOR REMARK 3 L11: 5.2415 L22: 4.2643 REMARK 3 L33: 15.5321 L12: -0.1856 REMARK 3 L13: 0.4804 L23: 0.7432 REMARK 3 S TENSOR REMARK 3 S11: 0.1025 S12: -0.4358 S13: -0.1149 REMARK 3 S21: 0.7140 S22: 0.0554 S23: -0.4388 REMARK 3 S31: 0.6893 S32: -1.0203 S33: -0.1579 REMARK 3 REMARK 3 TLS GROUP : 25 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 164 D 181 REMARK 3 ORIGIN FOR THE GROUP (A): 90.2929 132.4538 57.6331 REMARK 3 T TENSOR REMARK 3 T11: -0.3050 T22: -0.4608 REMARK 3 T33: -0.2338 T12: 0.0034 REMARK 3 T13: -0.0551 T23: -0.1294 REMARK 3 L TENSOR REMARK 3 L11: 3.4148 L22: 7.1441 REMARK 3 L33: 24.2094 L12: 1.8571 REMARK 3 L13: 2.7402 L23: -5.2811 REMARK 3 S TENSOR REMARK 3 S11: 0.4989 S12: -0.3502 S13: 0.3420 REMARK 3 S21: 0.8996 S22: -0.3728 S23: 0.1333 REMARK 3 S31: 0.5512 S32: 0.0279 S33: -0.1261 REMARK 3 REMARK 3 TLS GROUP : 26 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 182 D 200 REMARK 3 ORIGIN FOR THE GROUP (A): 90.8389 136.9440 68.6529 REMARK 3 T TENSOR REMARK 3 T11: 0.0192 T22: 0.0104 REMARK 3 T33: -0.0019 T12: -0.0686 REMARK 3 T13: 0.0526 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.4862 L22: 3.7601 REMARK 3 L33: 15.5301 L12: 1.2899 REMARK 3 L13: 1.8684 L23: 6.6364 REMARK 3 S TENSOR REMARK 3 S11: 0.5390 S12: -1.6132 S13: 0.6393 REMARK 3 S21: 0.6526 S22: -0.2313 S23: -1.2757 REMARK 3 S31: 1.2634 S32: -0.8339 S33: -0.3078 REMARK 3 REMARK 3 TLS GROUP : 27 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 201 D 209 REMARK 3 ORIGIN FOR THE GROUP (A): 96.5253 135.0892 72.1612 REMARK 3 T TENSOR REMARK 3 T11: 0.0008 T22: -0.0024 REMARK 3 T33: -0.0013 T12: -0.0006 REMARK 3 T13: 0.0020 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.5018 L22: 18.5969 REMARK 3 L33: 1.5573 L12: 4.8662 REMARK 3 L13: -0.3836 L23: -3.2748 REMARK 3 S TENSOR REMARK 3 S11: -0.1824 S12: -1.0750 S13: 0.0948 REMARK 3 S21: 0.9952 S22: -0.8291 S23: -3.4664 REMARK 3 S31: -0.1077 S32: 1.7367 S33: 1.0114 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3CRK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000047127. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50377 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 71.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.26900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COMO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE (PH 5.3) AND 0.5 REMARK 280 M SODIUM FORMATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 60.33950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 TRP A 3 REMARK 465 PHE A 4 REMARK 465 ARG A 5 REMARK 465 ALA A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 LYS A 9 REMARK 465 ASN A 10 REMARK 465 ALA A 11 REMARK 465 GLY A 178 REMARK 465 SER A 179 REMARK 465 THR A 180 REMARK 465 ASN A 181 REMARK 465 PRO A 182 REMARK 465 ALA A 183 REMARK 465 HIS A 184 REMARK 465 THR A 313 REMARK 465 PRO A 314 REMARK 465 GLN A 315 REMARK 465 PRO A 316 REMARK 465 GLY A 317 REMARK 465 THR A 318 REMARK 465 GLY A 319 REMARK 465 GLY A 320 REMARK 465 THR A 321 REMARK 465 PRO A 322 REMARK 465 LEU A 323 REMARK 465 ALA A 324 REMARK 465 GLY A 325 REMARK 465 PHE A 326 REMARK 465 THR A 403 REMARK 465 TYR A 404 REMARK 465 ARG A 405 REMARK 465 VAL A 406 REMARK 465 SER A 407 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 TRP B 3 REMARK 465 PHE B 4 REMARK 465 ARG B 5 REMARK 465 ALA B 6 REMARK 465 LEU B 7 REMARK 465 LEU B 8 REMARK 465 LYS B 9 REMARK 465 ASN B 10 REMARK 465 ALA B 11 REMARK 465 GLY B 178 REMARK 465 SER B 179 REMARK 465 THR B 180 REMARK 465 ASN B 181 REMARK 465 PRO B 182 REMARK 465 ALA B 183 REMARK 465 HIS B 184 REMARK 465 PRO B 185 REMARK 465 LYS B 186 REMARK 465 THR B 313 REMARK 465 PRO B 314 REMARK 465 GLN B 315 REMARK 465 PRO B 316 REMARK 465 GLY B 317 REMARK 465 THR B 318 REMARK 465 GLY B 319 REMARK 465 GLY B 320 REMARK 465 THR B 321 REMARK 465 PRO B 322 REMARK 465 LEU B 323 REMARK 465 ALA B 324 REMARK 465 GLY B 325 REMARK 465 PHE B 326 REMARK 465 ARG B 405 REMARK 465 VAL B 406 REMARK 465 SER B 407 REMARK 465 SER D 128 REMARK 465 TYR D 129 REMARK 465 PRO D 130 REMARK 465 PRO D 131 REMARK 465 LYS D 210 REMARK 465 GLU D 211 REMARK 465 ALA D 212 REMARK 465 ASP D 213 REMARK 465 ILE D 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 12 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 42 -94.09 -154.34 REMARK 500 GLU A 104 -22.90 70.98 REMARK 500 THR A 140 -45.66 -135.60 REMARK 500 ARG A 291 47.61 -108.97 REMARK 500 SER A 309 46.57 -89.21 REMARK 500 ALA B 44 29.39 -77.98 REMARK 500 THR B 140 -37.55 -141.22 REMARK 500 ARG B 291 48.77 -108.42 REMARK 500 PHE B 352 -60.66 -122.41 REMARK 500 PRO C 131 106.52 -56.94 REMARK 500 GLU C 162 91.44 -65.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A3001 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 24 O REMARK 620 2 TYR A 374 O 92.2 REMARK 620 3 HOH A3098 O 133.0 100.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B3002 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 24 O REMARK 620 2 PHE B 26 O 85.2 REMARK 620 3 ASN B 63 OD1 84.0 75.9 REMARK 620 4 TYR B 374 O 102.1 156.0 82.1 REMARK 620 5 HOH D 259 O 132.9 93.6 141.3 97.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 3002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CRL RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH ANP. DBREF 3CRK A 1 407 UNP Q64536 PDK2_RAT 1 407 DBREF 3CRK B 1 407 UNP Q64536 PDK2_RAT 1 407 DBREF 3CRK C 128 214 UNP P10515 ODP2_HUMAN 181 267 DBREF 3CRK D 128 214 UNP P10515 ODP2_HUMAN 181 267 SEQRES 1 A 407 MET ARG TRP PHE ARG ALA LEU LEU LYS ASN ALA SER LEU SEQRES 2 A 407 ALA GLY ALA PRO LYS TYR ILE GLU HIS PHE SER LYS PHE SEQRES 3 A 407 SER PRO SER PRO LEU SER MET LYS GLN PHE LEU ASP PHE SEQRES 4 A 407 GLY SER SER ASN ALA CYS GLU LYS THR SER PHE THR PHE SEQRES 5 A 407 LEU ARG GLN GLU LEU PRO VAL ARG LEU ALA ASN ILE MET SEQRES 6 A 407 LYS GLU ILE ASN LEU LEU PRO ASP ARG VAL LEU SER THR SEQRES 7 A 407 PRO SER VAL GLN LEU VAL GLN SER TRP TYR VAL GLN SER SEQRES 8 A 407 LEU LEU ASP ILE MET GLU PHE LEU ASP LYS ASP PRO GLU SEQRES 9 A 407 ASP HIS ARG THR LEU SER GLN PHE THR ASP ALA LEU VAL SEQRES 10 A 407 THR ILE ARG ASN ARG HIS ASN ASP VAL VAL PRO THR MET SEQRES 11 A 407 ALA GLN GLY VAL LEU GLU TYR LYS ASP THR TYR GLY ASP SEQRES 12 A 407 ASP PRO VAL SER ASN GLN ASN ILE GLN TYR PHE LEU ASP SEQRES 13 A 407 ARG PHE TYR LEU SER ARG ILE SER ILE ARG MET LEU ILE SEQRES 14 A 407 ASN GLN HIS THR LEU ILE PHE ASP GLY SER THR ASN PRO SEQRES 15 A 407 ALA HIS PRO LYS HIS ILE GLY SER ILE ASP PRO ASN CYS SEQRES 16 A 407 SER VAL SER ASP VAL VAL LYS ASP ALA TYR ASP MET ALA SEQRES 17 A 407 LYS LEU LEU CYS ASP LYS TYR TYR MET ALA SER PRO ASP SEQRES 18 A 407 LEU GLU ILE GLN GLU VAL ASN ALA THR ASN ALA THR GLN SEQRES 19 A 407 PRO ILE HIS MET VAL TYR VAL PRO SER HIS LEU TYR HIS SEQRES 20 A 407 MET LEU PHE GLU LEU PHE LYS ASN ALA MET ARG ALA THR SEQRES 21 A 407 VAL GLU SER HIS GLU SER SER LEU THR LEU PRO PRO ILE SEQRES 22 A 407 LYS ILE MET VAL ALA LEU GLY GLU GLU ASP LEU SER ILE SEQRES 23 A 407 LYS MET SER ASP ARG GLY GLY GLY VAL PRO LEU ARG LYS SEQRES 24 A 407 ILE GLU ARG LEU PHE SER TYR MET TYR SER THR ALA PRO SEQRES 25 A 407 THR PRO GLN PRO GLY THR GLY GLY THR PRO LEU ALA GLY SEQRES 26 A 407 PHE GLY TYR GLY LEU PRO ILE SER ARG LEU TYR ALA LYS SEQRES 27 A 407 TYR PHE GLN GLY ASP LEU GLN LEU PHE SER MET GLU GLY SEQRES 28 A 407 PHE GLY THR ASP ALA VAL ILE TYR LEU LYS ALA LEU SER SEQRES 29 A 407 THR ASP SER VAL GLU ARG LEU PRO VAL TYR ASN LYS SER SEQRES 30 A 407 ALA TRP ARG HIS TYR GLN THR ILE GLN GLU ALA GLY ASP SEQRES 31 A 407 TRP CYS VAL PRO SER THR GLU PRO LYS ASN THR SER THR SEQRES 32 A 407 TYR ARG VAL SER SEQRES 1 B 407 MET ARG TRP PHE ARG ALA LEU LEU LYS ASN ALA SER LEU SEQRES 2 B 407 ALA GLY ALA PRO LYS TYR ILE GLU HIS PHE SER LYS PHE SEQRES 3 B 407 SER PRO SER PRO LEU SER MET LYS GLN PHE LEU ASP PHE SEQRES 4 B 407 GLY SER SER ASN ALA CYS GLU LYS THR SER PHE THR PHE SEQRES 5 B 407 LEU ARG GLN GLU LEU PRO VAL ARG LEU ALA ASN ILE MET SEQRES 6 B 407 LYS GLU ILE ASN LEU LEU PRO ASP ARG VAL LEU SER THR SEQRES 7 B 407 PRO SER VAL GLN LEU VAL GLN SER TRP TYR VAL GLN SER SEQRES 8 B 407 LEU LEU ASP ILE MET GLU PHE LEU ASP LYS ASP PRO GLU SEQRES 9 B 407 ASP HIS ARG THR LEU SER GLN PHE THR ASP ALA LEU VAL SEQRES 10 B 407 THR ILE ARG ASN ARG HIS ASN ASP VAL VAL PRO THR MET SEQRES 11 B 407 ALA GLN GLY VAL LEU GLU TYR LYS ASP THR TYR GLY ASP SEQRES 12 B 407 ASP PRO VAL SER ASN GLN ASN ILE GLN TYR PHE LEU ASP SEQRES 13 B 407 ARG PHE TYR LEU SER ARG ILE SER ILE ARG MET LEU ILE SEQRES 14 B 407 ASN GLN HIS THR LEU ILE PHE ASP GLY SER THR ASN PRO SEQRES 15 B 407 ALA HIS PRO LYS HIS ILE GLY SER ILE ASP PRO ASN CYS SEQRES 16 B 407 SER VAL SER ASP VAL VAL LYS ASP ALA TYR ASP MET ALA SEQRES 17 B 407 LYS LEU LEU CYS ASP LYS TYR TYR MET ALA SER PRO ASP SEQRES 18 B 407 LEU GLU ILE GLN GLU VAL ASN ALA THR ASN ALA THR GLN SEQRES 19 B 407 PRO ILE HIS MET VAL TYR VAL PRO SER HIS LEU TYR HIS SEQRES 20 B 407 MET LEU PHE GLU LEU PHE LYS ASN ALA MET ARG ALA THR SEQRES 21 B 407 VAL GLU SER HIS GLU SER SER LEU THR LEU PRO PRO ILE SEQRES 22 B 407 LYS ILE MET VAL ALA LEU GLY GLU GLU ASP LEU SER ILE SEQRES 23 B 407 LYS MET SER ASP ARG GLY GLY GLY VAL PRO LEU ARG LYS SEQRES 24 B 407 ILE GLU ARG LEU PHE SER TYR MET TYR SER THR ALA PRO SEQRES 25 B 407 THR PRO GLN PRO GLY THR GLY GLY THR PRO LEU ALA GLY SEQRES 26 B 407 PHE GLY TYR GLY LEU PRO ILE SER ARG LEU TYR ALA LYS SEQRES 27 B 407 TYR PHE GLN GLY ASP LEU GLN LEU PHE SER MET GLU GLY SEQRES 28 B 407 PHE GLY THR ASP ALA VAL ILE TYR LEU LYS ALA LEU SER SEQRES 29 B 407 THR ASP SER VAL GLU ARG LEU PRO VAL TYR ASN LYS SER SEQRES 30 B 407 ALA TRP ARG HIS TYR GLN THR ILE GLN GLU ALA GLY ASP SEQRES 31 B 407 TRP CYS VAL PRO SER THR GLU PRO LYS ASN THR SER THR SEQRES 32 B 407 TYR ARG VAL SER SEQRES 1 C 87 SER TYR PRO PRO HIS MET GLN VAL LEU LEU PRO ALA LEU SEQRES 2 C 87 SER PRO THR MET THR MET GLY THR VAL GLN ARG TRP GLU SEQRES 3 C 87 LYS LYS VAL GLY GLU LYS LEU SER GLU GLY ASP LEU LEU SEQRES 4 C 87 ALA GLU ILE GLU THR ASP LA2 ALA THR ILE GLY PHE GLU SEQRES 5 C 87 VAL GLN GLU GLU GLY TYR LEU ALA LYS ILE LEU VAL PRO SEQRES 6 C 87 GLU GLY THR ARG ASP VAL PRO LEU GLY THR PRO LEU CYS SEQRES 7 C 87 ILE ILE VAL GLU LYS GLU ALA ASP ILE SEQRES 1 D 87 SER TYR PRO PRO HIS MET GLN VAL LEU LEU PRO ALA LEU SEQRES 2 D 87 SER PRO THR MET THR MET GLY THR VAL GLN ARG TRP GLU SEQRES 3 D 87 LYS LYS VAL GLY GLU LYS LEU SER GLU GLY ASP LEU LEU SEQRES 4 D 87 ALA GLU ILE GLU THR ASP LA2 ALA THR ILE GLY PHE GLU SEQRES 5 D 87 VAL GLN GLU GLU GLY TYR LEU ALA LYS ILE LEU VAL PRO SEQRES 6 D 87 GLU GLY THR ARG ASP VAL PRO LEU GLY THR PRO LEU CYS SEQRES 7 D 87 ILE ILE VAL GLU LYS GLU ALA ASP ILE MODRES 3CRK LA2 C 173 LYS MODRES 3CRK LA2 D 173 LYS HET LA2 C 173 20 HET LA2 D 173 20 HET K A3001 1 HET K B3002 1 HETNAM LA2 N~6~-[(6R)-6,8-DISULFANYLOCTANOYL]-L-LYSINE HETNAM K POTASSIUM ION HETSYN LA2 LIPOYLLYSINE FORMUL 3 LA2 2(C14 H28 N2 O3 S2) FORMUL 5 K 2(K 1+) FORMUL 7 HOH *267(H2 O) HELIX 1 1 SER A 12 ALA A 14 5 3 HELIX 2 2 GLY A 15 LYS A 25 1 11 HELIX 3 3 SER A 32 GLY A 40 1 9 HELIX 4 4 CYS A 45 ASN A 69 1 25 HELIX 5 5 PRO A 72 SER A 77 1 6 HELIX 6 6 THR A 78 GLU A 97 1 20 HELIX 7 7 ASP A 105 HIS A 123 1 19 HELIX 8 8 ASP A 125 GLY A 142 1 18 HELIX 9 9 ASP A 144 ASP A 177 1 34 HELIX 10 10 VAL A 197 TYR A 216 1 20 HELIX 11 11 VAL A 241 SER A 263 1 23 HELIX 12 12 PRO A 296 GLU A 301 1 6 HELIX 13 13 ARG A 302 SER A 305 5 4 HELIX 14 14 TYR A 328 PHE A 340 1 13 HELIX 15 15 ASN A 375 HIS A 381 1 7 HELIX 16 16 GLY B 15 LYS B 25 1 11 HELIX 17 17 SER B 32 ASN B 43 1 12 HELIX 18 18 CYS B 45 ASN B 69 1 25 HELIX 19 19 PRO B 72 SER B 77 1 6 HELIX 20 20 THR B 78 GLU B 97 1 20 HELIX 21 21 ASP B 105 HIS B 123 1 19 HELIX 22 22 ASP B 125 ASP B 139 1 15 HELIX 23 23 ASP B 144 ASP B 177 1 34 HELIX 24 24 VAL B 197 LYS B 214 1 18 HELIX 25 25 VAL B 241 SER B 263 1 23 HELIX 26 26 PRO B 296 GLU B 301 1 6 HELIX 27 27 ARG B 302 SER B 305 5 4 HELIX 28 28 TYR B 328 PHE B 340 1 13 HELIX 29 29 ASN B 375 HIS B 381 1 7 SHEET 1 A 2 ASP A 192 SER A 196 0 SHEET 2 A 2 HIS A 237 TYR A 240 -1 O TYR A 240 N ASP A 192 SHEET 1 B 5 LEU A 222 ASN A 228 0 SHEET 2 B 5 ILE A 273 LEU A 279 1 O ILE A 275 N GLU A 223 SHEET 3 B 5 ASP A 283 ASP A 290 -1 O LYS A 287 N MET A 276 SHEET 4 B 5 GLY A 353 LYS A 361 -1 O ALA A 356 N MET A 288 SHEET 5 B 5 ASP A 343 MET A 349 -1 N ASP A 343 O TYR A 359 SHEET 1 C 2 ASP B 192 SER B 196 0 SHEET 2 C 2 HIS B 237 TYR B 240 -1 O TYR B 240 N ASP B 192 SHEET 1 D 5 LEU B 222 ASN B 228 0 SHEET 2 D 5 ILE B 273 LEU B 279 1 O ILE B 275 N GLU B 223 SHEET 3 D 5 ASP B 283 ASP B 290 -1 O SER B 285 N ALA B 278 SHEET 4 D 5 GLY B 353 LYS B 361 -1 O ALA B 356 N MET B 288 SHEET 5 D 5 ASP B 343 MET B 349 -1 N ASP B 343 O TYR B 359 SHEET 1 E 4 HIS C 132 LEU C 136 0 SHEET 2 E 4 PRO C 203 VAL C 208 -1 O ILE C 207 N MET C 133 SHEET 3 E 4 GLY C 184 ILE C 189 -1 N ALA C 187 O ILE C 206 SHEET 4 E 4 LYS C 159 LEU C 160 -1 N LEU C 160 O GLY C 184 SHEET 1 F 4 THR C 175 GLU C 179 0 SHEET 2 F 4 LEU C 165 GLU C 170 -1 N LEU C 166 O PHE C 178 SHEET 3 F 4 MET C 146 TRP C 152 -1 N GLN C 150 O GLU C 168 SHEET 4 F 4 VAL C 198 PRO C 199 -1 O VAL C 198 N GLY C 147 SHEET 1 G 4 MET D 133 LEU D 136 0 SHEET 2 G 4 PRO D 203 VAL D 208 -1 O ILE D 207 N MET D 133 SHEET 3 G 4 GLY D 184 ILE D 189 -1 N ALA D 187 O ILE D 206 SHEET 4 G 4 LYS D 159 LEU D 160 -1 N LEU D 160 O GLY D 184 SHEET 1 H 4 THR D 175 GLU D 179 0 SHEET 2 H 4 LEU D 165 GLU D 170 -1 N ILE D 169 O ILE D 176 SHEET 3 H 4 MET D 146 TRP D 152 -1 N THR D 148 O GLU D 170 SHEET 4 H 4 VAL D 198 PRO D 199 -1 O VAL D 198 N GLY D 147 LINK C ASP C 172 N LA2 C 173 1555 1555 1.33 LINK C LA2 C 173 N ALA C 174 1555 1555 1.33 LINK C ASP D 172 N LA2 D 173 1555 1555 1.33 LINK C LA2 D 173 N ALA D 174 1555 1555 1.33 LINK O SER A 24 K K A3001 1555 1555 2.82 LINK O TYR A 374 K K A3001 1555 1555 2.49 LINK O SER B 24 K K B3002 1555 1555 2.62 LINK O PHE B 26 K K B3002 1555 1555 2.87 LINK OD1 ASN B 63 K K B3002 1555 1555 2.89 LINK O TYR B 374 K K B3002 1555 1555 2.46 LINK K K A3001 O HOH A3098 1555 1555 2.59 LINK K K B3002 O HOH D 259 1555 1555 2.76 CISPEP 1 ALA A 311 PRO A 312 0 -1.32 CISPEP 2 ALA B 311 PRO B 312 0 -1.18 SITE 1 AC1 4 SER A 24 PHE A 26 ASN A 63 TYR A 374 SITE 1 AC2 4 SER B 24 PHE B 26 ASN B 63 TYR B 374 CRYST1 71.380 120.679 71.466 90.00 96.03 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014010 0.000000 0.001479 0.00000 SCALE2 0.000000 0.008286 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014070 0.00000