HEADER LYASE 19-MAR-08 3CLH TITLE CRYSTAL STRUCTURE OF 3-DEHYDROQUINATE SYNTHASE (DHQS)FROM TITLE 2 HELICOBACTER PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-DEHYDROQUINATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.2.3.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_COMMON: CAMPYLOBACTER PYLORI; SOURCE 4 ORGANISM_TAXID: 210; SOURCE 5 GENE: AROB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS SHIKIMATE PATHWAY, AROMATIC AMINO ACID BIOSYNTHESIS, DHQS, KEYWDS 2 AMINO-ACID BIOSYNTHESIS, CYTOPLASM, LYASE, NAD EXPDTA X-RAY DIFFRACTION AUTHOR W.C.WANG,J.S.LIU,W.C.CHENG,H.J.WANG,Y.C.CHEN REVDAT 1 24-MAR-09 3CLH 0 JRNL AUTH J.S.LIU,W.C.CHENG,H.J.WANG,Y.C.CHEN,W.C.WANG JRNL TITL STRUCTURE-BASED INHIBITOR DISCOVERY OF JRNL TITL 2 HELICOBACTER PYLORI DEHYDROQUINATE SYNTHASE. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 373 1 2008 JRNL REFN ISSN 0006-291X JRNL PMID 18503755 JRNL DOI 10.1016/J.BBRC.2008.05.070 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 35489 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1821 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4902 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.019 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 1.520 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; 7.378 ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ;33.920 ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; 0.109 ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; 0.007 ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; 0.216 ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; 0.308 ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; 0.172 ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; 0.224 ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; 0.066 ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3CLH COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAR-08. REMARK 100 THE RCSB ID CODE IS RCSB046919. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35489 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 79.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1NRX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM NAD, 3.5M NAFORMATE, 0.1M TRIS REMARK 280 -HCL (PH 7.5), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 79.14700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.69554 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.46233 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 79.14700 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 45.69554 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.46233 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 79.14700 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 45.69554 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.46233 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 91.39108 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 64.92467 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 91.39108 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 64.92467 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 91.39108 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 64.92467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 GLU A 3 REMARK 465 VAL A 215 REMARK 465 GLN A 216 REMARK 465 ASP A 217 REMARK 465 GLU A 218 REMARK 465 LYS A 219 REMARK 465 GLU A 220 REMARK 465 GLN A 221 REMARK 465 ASN A 222 REMARK 465 ILE A 223 REMARK 465 ILE A 292 REMARK 465 LEU A 293 REMARK 465 ASP A 294 REMARK 465 LEU A 295 REMARK 465 GLN A 296 REMARK 465 LYS A 297 REMARK 465 PHE A 298 REMARK 465 TYR A 299 REMARK 465 GLU A 300 REMARK 465 ARG A 301 REMARK 465 LEU A 302 REMARK 465 PHE A 303 REMARK 465 LEU A 304 REMARK 465 ASP A 305 REMARK 465 LYS A 306 REMARK 465 LYS A 307 REMARK 465 SER A 308 REMARK 465 GLU A 309 REMARK 465 ASN A 310 REMARK 465 LYS A 311 REMARK 465 THR A 312 REMARK 465 ILE A 313 REMARK 465 LYS A 314 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 GLU B 3 REMARK 465 VAL B 215 REMARK 465 GLN B 216 REMARK 465 ASP B 217 REMARK 465 GLU B 218 REMARK 465 LYS B 219 REMARK 465 GLU B 220 REMARK 465 GLN B 221 REMARK 465 ASN B 222 REMARK 465 ILE B 223 REMARK 465 ILE B 292 REMARK 465 LEU B 293 REMARK 465 ASP B 294 REMARK 465 LEU B 295 REMARK 465 GLN B 296 REMARK 465 LYS B 297 REMARK 465 PHE B 298 REMARK 465 TYR B 299 REMARK 465 GLU B 300 REMARK 465 ARG B 301 REMARK 465 LEU B 302 REMARK 465 PHE B 303 REMARK 465 LEU B 304 REMARK 465 ASP B 305 REMARK 465 LYS B 306 REMARK 465 LYS B 307 REMARK 465 SER B 308 REMARK 465 GLU B 309 REMARK 465 ASN B 310 REMARK 465 LYS B 311 REMARK 465 THR B 312 REMARK 465 ILE B 313 REMARK 465 LYS B 314 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 9 -73.02 -72.25 REMARK 500 GLU A 10 -44.61 -150.78 REMARK 500 LYS A 11 -39.18 -163.69 REMARK 500 LEU A 40 -42.65 -137.10 REMARK 500 ASN A 84 -162.25 -118.54 REMARK 500 ASP A 126 -50.84 -130.93 REMARK 500 PHE A 182 -41.65 -131.76 REMARK 500 ASN A 228 31.61 -98.04 REMARK 500 TYR A 290 -73.59 -60.49 REMARK 500 ILE A 316 94.82 60.65 REMARK 500 HIS A 329 47.50 -106.07 REMARK 500 LYS B 9 -137.85 -127.90 REMARK 500 TYR B 13 -134.70 -124.65 REMARK 500 LEU B 40 -41.68 -136.16 REMARK 500 ASN B 84 -162.17 -118.62 REMARK 500 ASP B 126 -59.26 -141.94 REMARK 500 PHE B 182 -53.72 -127.96 REMARK 500 ASP B 242 -135.20 -96.08 REMARK 500 TYR B 243 12.79 -64.50 REMARK 500 ARG B 245 -63.42 -106.84 REMARK 500 SER B 328 -77.41 -117.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR B 241 24.7 L L OUTSIDE RANGE REMARK 500 TRP B 342 22.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 344 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 344 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 400 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 401 DBREF 3CLH A 1 343 UNP P56081 AROB_HELPY 1 343 DBREF 3CLH B 1 343 UNP P56081 AROB_HELPY 1 343 SEQRES 1 A 343 MET GLN GLU ILE LEU ILE PRO LEU LYS GLU LYS ASN TYR SEQRES 2 A 343 LYS VAL PHE LEU GLY GLU LEU PRO GLU ILE LYS LEU LYS SEQRES 3 A 343 GLN LYS ALA LEU ILE ILE SER ASP SER ILE VAL ALA GLY SEQRES 4 A 343 LEU HIS LEU PRO TYR LEU LEU GLU ARG LEU LYS ALA LEU SEQRES 5 A 343 GLU VAL ARG VAL CYS VAL ILE GLU SER GLY GLU LYS TYR SEQRES 6 A 343 LYS ASN PHE HIS SER LEU GLU ARG ILE LEU ASN ASN ALA SEQRES 7 A 343 PHE GLU MET GLN LEU ASN ARG HIS SER LEU MET ILE ALA SEQRES 8 A 343 LEU GLY GLY GLY VAL ILE SER ASP MET VAL GLY PHE ALA SEQRES 9 A 343 SER SER ILE TYR PHE ARG GLY ILE ASP PHE ILE ASN ILE SEQRES 10 A 343 PRO THR THR LEU LEU ALA GLN VAL ASP ALA SER VAL GLY SEQRES 11 A 343 GLY LYS THR GLY ILE ASN THR PRO TYR GLY LYS ASN LEU SEQRES 12 A 343 ILE GLY SER PHE HIS GLN PRO LYS ALA VAL TYR MET ASP SEQRES 13 A 343 LEU ALA PHE LEU LYS THR LEU GLU LYS ARG GLU PHE GLN SEQRES 14 A 343 ALA GLY VAL ALA GLU ILE ILE LYS MET ALA VAL CYS PHE SEQRES 15 A 343 ASP LYS ASN LEU VAL GLU ARG LEU GLU THR LYS ASP LEU SEQRES 16 A 343 LYS ASP CYS LEU GLU GLU VAL ILE PHE GLN SER VAL ASN SEQRES 17 A 343 ILE LYS ALA GLN VAL VAL VAL GLN ASP GLU LYS GLU GLN SEQRES 18 A 343 ASN ILE ARG ALA GLY LEU ASN TYR GLY HIS THR PHE GLY SEQRES 19 A 343 HIS ALA ILE GLU LYS GLU THR ASP TYR GLU ARG PHE LEU SEQRES 20 A 343 HIS GLY GLU ALA ILE ALA ILE GLY MET ARG MET ALA ASN SEQRES 21 A 343 ASP LEU ALA LEU SER LEU GLY MET LEU THR LEU LYS GLU SEQRES 22 A 343 TYR GLU ARG ILE GLU ASN LEU LEU LYS LYS PHE ASP LEU SEQRES 23 A 343 ILE PHE HIS TYR LYS ILE LEU ASP LEU GLN LYS PHE TYR SEQRES 24 A 343 GLU ARG LEU PHE LEU ASP LYS LYS SER GLU ASN LYS THR SEQRES 25 A 343 ILE LYS PHE ILE LEU PRO LYS GLY VAL GLY ALA PHE GLU SEQRES 26 A 343 VAL ALA SER HIS ILE PRO LYS GLU THR ILE ILE LYS VAL SEQRES 27 A 343 LEU GLU LYS TRP HIS SEQRES 1 B 343 MET GLN GLU ILE LEU ILE PRO LEU LYS GLU LYS ASN TYR SEQRES 2 B 343 LYS VAL PHE LEU GLY GLU LEU PRO GLU ILE LYS LEU LYS SEQRES 3 B 343 GLN LYS ALA LEU ILE ILE SER ASP SER ILE VAL ALA GLY SEQRES 4 B 343 LEU HIS LEU PRO TYR LEU LEU GLU ARG LEU LYS ALA LEU SEQRES 5 B 343 GLU VAL ARG VAL CYS VAL ILE GLU SER GLY GLU LYS TYR SEQRES 6 B 343 LYS ASN PHE HIS SER LEU GLU ARG ILE LEU ASN ASN ALA SEQRES 7 B 343 PHE GLU MET GLN LEU ASN ARG HIS SER LEU MET ILE ALA SEQRES 8 B 343 LEU GLY GLY GLY VAL ILE SER ASP MET VAL GLY PHE ALA SEQRES 9 B 343 SER SER ILE TYR PHE ARG GLY ILE ASP PHE ILE ASN ILE SEQRES 10 B 343 PRO THR THR LEU LEU ALA GLN VAL ASP ALA SER VAL GLY SEQRES 11 B 343 GLY LYS THR GLY ILE ASN THR PRO TYR GLY LYS ASN LEU SEQRES 12 B 343 ILE GLY SER PHE HIS GLN PRO LYS ALA VAL TYR MET ASP SEQRES 13 B 343 LEU ALA PHE LEU LYS THR LEU GLU LYS ARG GLU PHE GLN SEQRES 14 B 343 ALA GLY VAL ALA GLU ILE ILE LYS MET ALA VAL CYS PHE SEQRES 15 B 343 ASP LYS ASN LEU VAL GLU ARG LEU GLU THR LYS ASP LEU SEQRES 16 B 343 LYS ASP CYS LEU GLU GLU VAL ILE PHE GLN SER VAL ASN SEQRES 17 B 343 ILE LYS ALA GLN VAL VAL VAL GLN ASP GLU LYS GLU GLN SEQRES 18 B 343 ASN ILE ARG ALA GLY LEU ASN TYR GLY HIS THR PHE GLY SEQRES 19 B 343 HIS ALA ILE GLU LYS GLU THR ASP TYR GLU ARG PHE LEU SEQRES 20 B 343 HIS GLY GLU ALA ILE ALA ILE GLY MET ARG MET ALA ASN SEQRES 21 B 343 ASP LEU ALA LEU SER LEU GLY MET LEU THR LEU LYS GLU SEQRES 22 B 343 TYR GLU ARG ILE GLU ASN LEU LEU LYS LYS PHE ASP LEU SEQRES 23 B 343 ILE PHE HIS TYR LYS ILE LEU ASP LEU GLN LYS PHE TYR SEQRES 24 B 343 GLU ARG LEU PHE LEU ASP LYS LYS SER GLU ASN LYS THR SEQRES 25 B 343 ILE LYS PHE ILE LEU PRO LYS GLY VAL GLY ALA PHE GLU SEQRES 26 B 343 VAL ALA SER HIS ILE PRO LYS GLU THR ILE ILE LYS VAL SEQRES 27 B 343 LEU GLU LYS TRP HIS HET ZN A 344 1 HET ZN B 344 1 HET NAD A 400 44 HET NAD B 401 44 HETNAM ZN ZINC ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 ZN 2(ZN 2+) FORMUL 5 NAD 2(C21 H27 N7 O14 P2) FORMUL 7 HOH *206(H2 O) HELIX 1 1 SER A 35 GLY A 39 1 5 HELIX 2 2 HIS A 41 GLU A 47 1 7 HELIX 3 3 GLY A 62 LYS A 66 5 5 HELIX 4 4 ASN A 67 MET A 81 1 15 HELIX 5 5 GLY A 94 TYR A 108 1 15 HELIX 6 6 PHE A 109 GLY A 111 5 3 HELIX 7 7 THR A 120 ASP A 126 1 7 HELIX 8 8 PHE A 159 LEU A 163 5 5 HELIX 9 9 GLU A 164 ASP A 183 1 20 HELIX 10 10 ASP A 183 LYS A 193 1 11 HELIX 11 11 CYS A 198 VAL A 214 1 17 HELIX 12 12 GLY A 230 THR A 241 1 12 HELIX 13 13 LEU A 247 LEU A 266 1 20 HELIX 14 14 THR A 270 PHE A 284 1 15 HELIX 15 15 PRO A 331 LEU A 339 1 9 HELIX 16 16 ILE B 36 LEU B 40 5 5 HELIX 17 17 HIS B 41 GLU B 47 1 7 HELIX 18 18 GLY B 62 LYS B 66 5 5 HELIX 19 19 ASN B 67 MET B 81 1 15 HELIX 20 20 GLY B 94 TYR B 108 1 15 HELIX 21 21 PHE B 109 GLY B 111 5 3 HELIX 22 22 THR B 120 ASP B 126 1 7 HELIX 23 23 ALA B 158 LEU B 163 5 6 HELIX 24 24 GLU B 164 PHE B 182 1 19 HELIX 25 25 ASP B 183 LYS B 193 1 11 HELIX 26 26 CYS B 198 VAL B 214 1 17 HELIX 27 27 GLY B 230 ASP B 242 1 13 HELIX 28 28 LEU B 247 LEU B 266 1 20 HELIX 29 29 THR B 270 PHE B 284 1 15 HELIX 30 30 PRO B 331 GLU B 340 1 10 SHEET 1 A 6 VAL A 15 LEU A 17 0 SHEET 2 A 6 ALA A 152 MET A 155 1 O MET A 155 N PHE A 16 SHEET 3 A 6 ASP A 113 PRO A 118 1 N ASN A 116 O TYR A 154 SHEET 4 A 6 LEU A 88 GLY A 93 1 N ALA A 91 O ILE A 117 SHEET 5 A 6 ALA A 29 ASP A 34 1 N ILE A 32 O ILE A 90 SHEET 6 A 6 VAL A 54 ILE A 59 1 O CYS A 57 N ILE A 31 SHEET 1 B 2 ILE A 23 LYS A 24 0 SHEET 2 B 2 LEU A 49 LYS A 50 1 O LYS A 50 N ILE A 23 SHEET 1 C 2 LYS A 132 THR A 137 0 SHEET 2 C 2 GLY A 140 PHE A 147 -1 O GLY A 140 N THR A 137 SHEET 1 D 2 LEU A 317 PRO A 318 0 SHEET 2 D 2 PHE A 324 GLU A 325 -1 O GLU A 325 N LEU A 317 SHEET 1 E 2 LYS B 14 LEU B 17 0 SHEET 2 E 2 ALA B 152 MET B 155 1 O MET B 155 N PHE B 16 SHEET 1 F 2 ILE B 23 LYS B 24 0 SHEET 2 F 2 LEU B 49 LYS B 50 1 O LYS B 50 N ILE B 23 SHEET 1 G 4 VAL B 54 ILE B 59 0 SHEET 2 G 4 ALA B 29 ASP B 34 1 N ILE B 31 O CYS B 57 SHEET 3 G 4 LEU B 88 GLY B 93 1 O ILE B 90 N ILE B 32 SHEET 4 G 4 ASP B 113 PRO B 118 1 O ILE B 115 N MET B 89 SHEET 1 H 2 LYS B 132 THR B 137 0 SHEET 2 H 2 GLY B 140 PHE B 147 -1 O GLY B 140 N THR B 137 SHEET 1 I 2 ILE B 316 GLY B 320 0 SHEET 2 I 2 ALA B 323 VAL B 326 -1 O GLU B 325 N LEU B 317 LINK ZN ZN A 344 O HOH A 498 1555 1555 2.22 CISPEP 1 TRP A 342 HIS A 343 0 1.27 CISPEP 2 GLU B 10 LYS B 11 0 -9.69 CISPEP 3 ASN B 12 TYR B 13 0 -3.51 CISPEP 4 THR B 241 ASP B 242 0 0.20 CISPEP 5 TYR B 290 LYS B 291 0 -0.70 CISPEP 6 TRP B 342 HIS B 343 0 8.29 SITE 1 AC1 1 HIS A 248 SITE 1 AC2 2 HIS B 231 HIS B 248 SITE 1 AC3 20 ASP A 34 ILE A 36 HIS A 41 SER A 61 SITE 2 AC3 20 GLU A 63 LYS A 66 GLY A 94 GLY A 95 SITE 3 AC3 20 ASP A 99 THR A 119 THR A 120 LEU A 122 SITE 4 AC3 20 ASP A 126 ALA A 127 LYS A 132 ASN A 142 SITE 5 AC3 20 PHE A 159 THR A 162 LEU A 163 GLU A 167 SITE 1 AC4 20 ASP B 34 ILE B 36 HIS B 41 SER B 61 SITE 2 AC4 20 GLU B 63 LYS B 66 GLY B 94 GLY B 95 SITE 3 AC4 20 ASP B 99 THR B 119 THR B 120 LEU B 122 SITE 4 AC4 20 ASP B 126 ALA B 127 LYS B 132 ASN B 142 SITE 5 AC4 20 PHE B 159 THR B 162 LEU B 163 GLU B 167 CRYST1 158.294 158.294 97.387 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006317 0.003647 0.000000 0.00000 SCALE2 0.000000 0.007295 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010268 0.00000