HEADER HYDROLASE 02-MAY-07 2YZ2 TITLE CRYSTAL STRUCTURE OF THE ABC TRANSPORTER IN THE COBALT TRANSPORT TITLE 2 SYSTEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ABC TRANSPORTER ATP-BINDING PROTEIN TM_0222; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PUTATIVE COBALT IMPORT ATP-BINDING PROTEIN CBIO 1; COMPND 5 EC: 3.6.3.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3)-RIL-X; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-21A KEYWDS ABC TRANSPORTER, COBALT TRANSPORT, ATP-BINDING PROTEIN, TM0222, KEYWDS 2 HYDROLASE, INNER MEMBRANE, MEMBRANE, NUCLEOTIDE-BINDING, STRUCTURAL KEYWDS 3 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 4 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 5 INITIATIVE, RSGI EXPDTA X-RAY DIFFRACTION AUTHOR A.S.ETHAYATHULLAH,Y.BESSHO,B.PADMANABHAN,T.P.SINGH,P.KAUR,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 13-JUL-11 2YZ2 1 VERSN REVDAT 2 24-FEB-09 2YZ2 1 VERSN REVDAT 1 06-NOV-07 2YZ2 0 JRNL AUTH A.S.ETHAYATHULLAH,Y.BESSHO,B.PADMANABHAN,T.P.SINGH,P.KAUR, JRNL AUTH 2 S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF THE ABC TRANSPORTER IN THE COBALT JRNL TITL 2 TRANSPORT SYSTEM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 27606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1467 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1525 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.1800 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4223 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 476 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.87000 REMARK 3 B22 (A**2) : 0.87000 REMARK 3 B33 (A**2) : -1.31000 REMARK 3 B12 (A**2) : 0.44000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.380 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.292 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.189 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.397 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.906 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.830 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4345 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5859 ; 1.999 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 532 ; 7.583 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 203 ;40.738 ;23.695 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 812 ;18.072 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;20.829 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 663 ; 0.142 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3242 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2308 ; 0.236 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2992 ; 0.316 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 347 ; 0.208 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 92 ; 0.205 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.237 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2745 ; 1.264 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4306 ; 1.934 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1801 ; 3.125 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1552 ; 4.668 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JUL-07. REMARK 100 THE RCSB ID CODE IS RCSB027314. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97891, 0.90000, 0.97934 REMARK 200 MONOCHROMATOR : SI DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31555 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 21.300 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 17.80 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM FLOURIDE, 20% (W/V) PEG REMARK 280 3350 (PEG/ION-2), PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.65567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.31133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.65567 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.31133 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 35.65567 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 71.31133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 35.65567 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 71.31133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20054 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 74.24950 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 128.60391 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 35.65567 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 74.24950 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 128.60391 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 35.65567 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8043 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 74.24950 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 128.60391 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS B 264 REMARK 465 ASN B 265 REMARK 465 SER B 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 GLU A 249 CG CD OE1 OE2 REMARK 470 LYS B 247 CG CD CE NZ REMARK 470 GLU B 249 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 PHE A 84 N CA C O CB CG CD1 REMARK 480 PHE A 84 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 2 O HOH A 382 2.03 REMARK 500 O PRO B 17 O HOH B 457 2.05 REMARK 500 OD2 ASP B 67 O HOH B 414 2.09 REMARK 500 NH1 ARG B 2 O HOH B 291 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 5 CB VAL A 5 CG2 0.134 REMARK 500 VAL A 26 CB VAL A 26 CG1 0.130 REMARK 500 GLU A 122 CG GLU A 122 CD 0.097 REMARK 500 GLU A 143 CG GLU A 143 CD 0.110 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 145 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 145 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG B 2 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 MET B 238 CG - SD - CE ANGL. DEV. = 10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 156 60.73 70.25 REMARK 500 ASP A 170 -169.04 -70.04 REMARK 500 ASP A 230 114.26 -32.58 REMARK 500 GLU A 249 114.28 82.82 REMARK 500 SER A 253 -90.05 48.37 REMARK 500 MET A 254 -94.51 60.53 REMARK 500 SER A 255 165.52 170.35 REMARK 500 LEU B 18 36.34 -96.82 REMARK 500 GLU B 32 122.88 -31.93 REMARK 500 THR B 42 125.71 -19.44 REMARK 500 GLU B 212 111.61 -161.02 REMARK 500 ASP B 230 110.10 -38.31 REMARK 500 LEU B 246 79.41 -56.02 REMARK 500 LYS B 247 106.55 51.89 REMARK 500 ASP B 256 -7.42 44.40 REMARK 500 GLU B 258 -40.32 0.56 REMARK 500 LEU B 259 72.84 -52.10 REMARK 500 LEU B 260 50.50 -99.27 REMARK 500 ARG B 262 4.50 -31.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS A 264 ASN A 265 137.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP B 256 24.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 306 DISTANCE = 5.04 ANGSTROMS REMARK 525 HOH A 311 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH A 326 DISTANCE = 5.08 ANGSTROMS REMARK 525 HOH A 330 DISTANCE = 5.36 ANGSTROMS REMARK 525 HOH A 353 DISTANCE = 5.65 ANGSTROMS REMARK 525 HOH A 465 DISTANCE = 5.15 ANGSTROMS REMARK 525 HOH B 282 DISTANCE = 5.38 ANGSTROMS REMARK 525 HOH B 345 DISTANCE = 5.38 ANGSTROMS REMARK 525 HOH B 378 DISTANCE = 5.68 ANGSTROMS REMARK 525 HOH B 379 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH B 403 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B 407 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH B 411 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH B 417 DISTANCE = 10.04 ANGSTROMS REMARK 525 HOH B 420 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH B 445 DISTANCE = 8.83 ANGSTROMS REMARK 525 HOH B 467 DISTANCE = 5.63 ANGSTROMS REMARK 525 HOH B 497 DISTANCE = 5.49 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TMA001000222.1 RELATED DB: TARGETDB DBREF 2YZ2 A 1 266 UNP Q9WY65 Y222_THEMA 1 266 DBREF 2YZ2 B 1 266 UNP Q9WY65 Y222_THEMA 1 266 SEQRES 1 A 266 MET ARG ILE GLU VAL VAL ASN VAL SER HIS ILE PHE HIS SEQRES 2 A 266 ARG GLY THR PRO LEU GLU LYS LYS ALA LEU GLU ASN VAL SEQRES 3 A 266 SER LEU VAL ILE ASN GLU GLY GLU CYS LEU LEU VAL ALA SEQRES 4 A 266 GLY ASN THR GLY SER GLY LYS SER THR LEU LEU GLN ILE SEQRES 5 A 266 VAL ALA GLY LEU ILE GLU PRO THR SER GLY ASP VAL LEU SEQRES 6 A 266 TYR ASP GLY GLU ARG LYS LYS GLY TYR GLU ILE ARG ARG SEQRES 7 A 266 ASN ILE GLY ILE ALA PHE GLN TYR PRO GLU ASP GLN PHE SEQRES 8 A 266 PHE ALA GLU ARG VAL PHE ASP GLU VAL ALA PHE ALA VAL SEQRES 9 A 266 LYS ASN PHE TYR PRO ASP ARG ASP PRO VAL PRO LEU VAL SEQRES 10 A 266 LYS LYS ALA MET GLU PHE VAL GLY LEU ASP PHE ASP SER SEQRES 11 A 266 PHE LYS ASP ARG VAL PRO PHE PHE LEU SER GLY GLY GLU SEQRES 12 A 266 LYS ARG ARG VAL ALA ILE ALA SER VAL ILE VAL HIS GLU SEQRES 13 A 266 PRO ASP ILE LEU ILE LEU ASP GLU PRO LEU VAL GLY LEU SEQRES 14 A 266 ASP ARG GLU GLY LYS THR ASP LEU LEU ARG ILE VAL GLU SEQRES 15 A 266 LYS TRP LYS THR LEU GLY LYS THR VAL ILE LEU ILE SER SEQRES 16 A 266 HIS ASP ILE GLU THR VAL ILE ASN HIS VAL ASP ARG VAL SEQRES 17 A 266 VAL VAL LEU GLU LYS GLY LYS LYS VAL PHE ASP GLY THR SEQRES 18 A 266 ARG MET GLU PHE LEU GLU LYS TYR ASP PRO ARG PHE PHE SEQRES 19 A 266 THR SER LYS MET LEU VAL MET ARG ARG LEU VAL LEU LYS SEQRES 20 A 266 GLY GLU ASP PRO PHE SER MET SER ASP ASP GLU LEU LEU SEQRES 21 A 266 GLU ARG VAL CYS ASN SER SEQRES 1 B 266 MET ARG ILE GLU VAL VAL ASN VAL SER HIS ILE PHE HIS SEQRES 2 B 266 ARG GLY THR PRO LEU GLU LYS LYS ALA LEU GLU ASN VAL SEQRES 3 B 266 SER LEU VAL ILE ASN GLU GLY GLU CYS LEU LEU VAL ALA SEQRES 4 B 266 GLY ASN THR GLY SER GLY LYS SER THR LEU LEU GLN ILE SEQRES 5 B 266 VAL ALA GLY LEU ILE GLU PRO THR SER GLY ASP VAL LEU SEQRES 6 B 266 TYR ASP GLY GLU ARG LYS LYS GLY TYR GLU ILE ARG ARG SEQRES 7 B 266 ASN ILE GLY ILE ALA PHE GLN TYR PRO GLU ASP GLN PHE SEQRES 8 B 266 PHE ALA GLU ARG VAL PHE ASP GLU VAL ALA PHE ALA VAL SEQRES 9 B 266 LYS ASN PHE TYR PRO ASP ARG ASP PRO VAL PRO LEU VAL SEQRES 10 B 266 LYS LYS ALA MET GLU PHE VAL GLY LEU ASP PHE ASP SER SEQRES 11 B 266 PHE LYS ASP ARG VAL PRO PHE PHE LEU SER GLY GLY GLU SEQRES 12 B 266 LYS ARG ARG VAL ALA ILE ALA SER VAL ILE VAL HIS GLU SEQRES 13 B 266 PRO ASP ILE LEU ILE LEU ASP GLU PRO LEU VAL GLY LEU SEQRES 14 B 266 ASP ARG GLU GLY LYS THR ASP LEU LEU ARG ILE VAL GLU SEQRES 15 B 266 LYS TRP LYS THR LEU GLY LYS THR VAL ILE LEU ILE SER SEQRES 16 B 266 HIS ASP ILE GLU THR VAL ILE ASN HIS VAL ASP ARG VAL SEQRES 17 B 266 VAL VAL LEU GLU LYS GLY LYS LYS VAL PHE ASP GLY THR SEQRES 18 B 266 ARG MET GLU PHE LEU GLU LYS TYR ASP PRO ARG PHE PHE SEQRES 19 B 266 THR SER LYS MET LEU VAL MET ARG ARG LEU VAL LEU LYS SEQRES 20 B 266 GLY GLU ASP PRO PHE SER MET SER ASP ASP GLU LEU LEU SEQRES 21 B 266 GLU ARG VAL CYS ASN SER FORMUL 3 HOH *476(H2 O) HELIX 1 1 GLY A 45 ALA A 54 1 10 HELIX 2 2 LYS A 72 ARG A 77 1 6 HELIX 3 3 TYR A 86 PHE A 91 5 6 HELIX 4 4 ARG A 95 ALA A 103 1 9 HELIX 5 5 PRO A 113 VAL A 124 1 12 HELIX 6 6 ASP A 127 LYS A 132 1 6 HELIX 7 7 VAL A 135 LEU A 139 5 5 HELIX 8 8 SER A 140 VAL A 154 1 15 HELIX 9 9 ASP A 170 LEU A 187 1 18 HELIX 10 10 VAL A 201 VAL A 205 5 5 HELIX 11 11 ARG A 222 TYR A 229 1 8 HELIX 12 12 THR A 235 LEU A 244 1 10 HELIX 13 13 ASP A 256 GLU A 261 1 6 HELIX 14 14 GLY B 45 ALA B 54 1 10 HELIX 15 15 LYS B 72 ARG B 77 1 6 HELIX 16 16 TYR B 86 PHE B 91 5 6 HELIX 17 17 ARG B 95 TYR B 108 1 14 HELIX 18 18 ASP B 112 GLY B 125 1 14 HELIX 19 19 ASP B 127 LYS B 132 1 6 HELIX 20 20 VAL B 135 LEU B 139 5 5 HELIX 21 21 SER B 140 VAL B 154 1 15 HELIX 22 22 ASP B 170 LEU B 187 1 18 HELIX 23 23 ASP B 197 ILE B 202 1 6 HELIX 24 24 ASN B 203 VAL B 205 5 3 HELIX 25 25 ARG B 222 TYR B 229 1 8 HELIX 26 26 THR B 235 LEU B 246 1 12 SHEET 1 A 4 LYS A 20 ILE A 30 0 SHEET 2 A 4 ILE A 3 PHE A 12 -1 N VAL A 5 O LEU A 28 SHEET 3 A 4 SER A 61 TYR A 66 -1 O ASP A 63 N VAL A 6 SHEET 4 A 4 GLU A 69 ARG A 70 -1 O GLU A 69 N TYR A 66 SHEET 1 B 6 ILE A 80 ALA A 83 0 SHEET 2 B 6 ILE A 159 ASP A 163 1 O ASP A 163 N ALA A 83 SHEET 3 B 6 THR A 190 ILE A 194 1 O ILE A 192 N LEU A 160 SHEET 4 B 6 CYS A 35 ALA A 39 1 N VAL A 38 O LEU A 193 SHEET 5 B 6 ARG A 207 GLU A 212 1 O VAL A 209 N ALA A 39 SHEET 6 B 6 LYS A 215 THR A 221 -1 O LYS A 215 N GLU A 212 SHEET 1 C 4 LYS B 20 ILE B 30 0 SHEET 2 C 4 ILE B 3 PHE B 12 -1 N PHE B 12 O LYS B 20 SHEET 3 C 4 SER B 61 TYR B 66 -1 O ASP B 63 N VAL B 6 SHEET 4 C 4 GLU B 69 ARG B 70 -1 O GLU B 69 N TYR B 66 SHEET 1 D 6 ILE B 80 ALA B 83 0 SHEET 2 D 6 ILE B 159 ASP B 163 1 O ILE B 161 N GLY B 81 SHEET 3 D 6 THR B 190 ILE B 194 1 O ILE B 192 N LEU B 162 SHEET 4 D 6 CYS B 35 ALA B 39 1 N VAL B 38 O LEU B 193 SHEET 5 D 6 ARG B 207 GLU B 212 1 O VAL B 209 N ALA B 39 SHEET 6 D 6 LYS B 215 THR B 221 -1 O VAL B 217 N VAL B 210 CRYST1 148.499 148.499 106.967 90.00 90.00 120.00 P 64 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006734 0.003888 0.000000 0.00000 SCALE2 0.000000 0.007776 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009349 0.00000