HEADER SIGNALING PROTEIN 16-APR-08 2VRW TITLE CRITICAL STRUCTURAL ROLE FOR THE PH AND C1 DOMAINS OF THE TITLE 2 VAV1 EXCHANGE FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-184; COMPND 5 SYNONYM: P21-RAC1, RAS- LIKE PROTEIN TC25, CELL MIGRATION-INDUCING COMPND 6 GENE 5 PROTEIN, RAC1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PROTO-ONCOGENE VAV; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: RESIDUES 170-575; COMPND 12 SYNONYM: P95VAV, VAV1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-4T1; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET24B KEYWDS LIPOPROTEIN, GTP-BINDING, METAL-BINDING, PROTO-ONCOGENE, KEYWDS 2 PHOSPHOPROTEIN, EXCHANGE FACTOR, RAC, VAV, GTPASE, MEMBRANE, SH2 KEYWDS 3 DOMAIN, SH3 DOMAIN, METHYLATION, ZINC-FINGER, PRENYLATION, KEYWDS 4 GUANINE-NUCLEOTIDE RELEASING FACTOR, PHORBOL-ESTER BINDING, KEYWDS 5 ADP-RIBOSYLATION, NUCLEOTIDE-BINDING, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.RAPLEY,V.TYBULEWICZ,K.RITTINGER REVDAT 4 13-JUL-11 2VRW 1 VERSN REVDAT 3 24-FEB-09 2VRW 1 VERSN REVDAT 2 08-JUL-08 2VRW 1 JRNL REMARK REVDAT 1 17-JUN-08 2VRW 0 JRNL AUTH J.RAPLEY,V.TYBULEWICZ,K.RITTINGER JRNL TITL CRUCIAL STRUCTURAL ROLE FOR THE PH AND C1 DOMAINS OF THE JRNL TITL 2 VAV1 EXCHANGE FACTOR. JRNL REF EMBO REP. V. 9 655 2008 JRNL REFN ISSN 1469-221X JRNL PMID 18511940 JRNL DOI 10.1038/EMBOR.2008.80 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 54863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2937 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3906 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 202 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4410 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 471 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.58000 REMARK 3 B33 (A**2) : 0.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.36000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.141 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.338 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4498 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6069 ; 1.031 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 545 ; 5.242 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 217 ;34.943 ;23.917 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 835 ;13.546 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;16.614 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 671 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3377 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2151 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3089 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 420 ; 0.125 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 68 ; 0.171 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.153 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2821 ; 0.542 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4400 ; 0.901 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1901 ; 1.463 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1668 ; 2.328 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): -8.5140 -28.5920 16.8848 REMARK 3 T TENSOR REMARK 3 T11: -0.0301 T22: -0.0357 REMARK 3 T33: -0.0252 T12: -0.0295 REMARK 3 T13: -0.0283 T23: 0.0407 REMARK 3 L TENSOR REMARK 3 L11: 1.9408 L22: 1.3813 REMARK 3 L33: 1.1312 L12: -0.7714 REMARK 3 L13: 0.7795 L23: -0.1047 REMARK 3 S TENSOR REMARK 3 S11: -0.1580 S12: 0.1519 S13: 0.1391 REMARK 3 S21: -0.0534 S22: 0.0393 S23: 0.0722 REMARK 3 S31: -0.1139 S32: 0.0403 S33: 0.1187 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 190 B 373 REMARK 3 ORIGIN FOR THE GROUP (A): -1.0518 -43.2341 34.7584 REMARK 3 T TENSOR REMARK 3 T11: -0.0190 T22: -0.0311 REMARK 3 T33: -0.0337 T12: -0.0062 REMARK 3 T13: 0.0126 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.5288 L22: 1.2227 REMARK 3 L33: 0.5868 L12: 0.6008 REMARK 3 L13: 0.4449 L23: 0.2923 REMARK 3 S TENSOR REMARK 3 S11: 0.0201 S12: 0.0040 S13: 0.0121 REMARK 3 S21: 0.0428 S22: 0.0158 S23: 0.0322 REMARK 3 S31: 0.0312 S32: -0.0406 S33: -0.0358 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 374 B 508 REMARK 3 ORIGIN FOR THE GROUP (A): 22.7588 -57.4588 1.9478 REMARK 3 T TENSOR REMARK 3 T11: -0.0107 T22: -0.0356 REMARK 3 T33: -0.0549 T12: 0.0125 REMARK 3 T13: 0.0067 T23: -0.0405 REMARK 3 L TENSOR REMARK 3 L11: 1.1124 L22: 0.6104 REMARK 3 L33: 3.1994 L12: -0.1691 REMARK 3 L13: -0.4719 L23: 0.1915 REMARK 3 S TENSOR REMARK 3 S11: 0.0251 S12: 0.1084 S13: -0.0379 REMARK 3 S21: -0.0530 S22: -0.0439 S23: 0.0588 REMARK 3 S31: 0.2326 S32: 0.1855 S33: 0.0188 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 509 B 564 REMARK 3 ORIGIN FOR THE GROUP (A): 28.3111 -45.8784 24.8559 REMARK 3 T TENSOR REMARK 3 T11: -0.0651 T22: -0.0341 REMARK 3 T33: -0.0200 T12: 0.0006 REMARK 3 T13: -0.0076 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 3.9054 L22: 2.1745 REMARK 3 L33: 1.5486 L12: 1.0536 REMARK 3 L13: -0.5063 L23: 0.7488 REMARK 3 S TENSOR REMARK 3 S11: -0.0792 S12: 0.0040 S13: 0.0134 REMARK 3 S21: 0.0070 S22: 0.0644 S23: -0.0533 REMARK 3 S31: 0.0137 S32: 0.0438 S33: 0.0148 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2VRW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-APR-08. REMARK 100 THE PDBE ID CODE IS EBI-35944. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.117 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DEN REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57653 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.85 REMARK 200 RESOLUTION RANGE LOW (A) : 20.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.5 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.20 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.3 REMARK 200 R MERGE FOR SHELL (I) : 0.46 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BICINE PH9.0 10% PEG 6000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.38150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.07150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.38150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.07150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 178 REMARK 465 PRO A 179 REMARK 465 PRO A 180 REMARK 465 PRO A 181 REMARK 465 VAL A 182 REMARK 465 LYS A 183 REMARK 465 LYS A 184 REMARK 465 GLY B 170 REMARK 465 ASP B 171 REMARK 465 GLU B 172 REMARK 465 ILE B 173 REMARK 465 TYR B 174 REMARK 465 GLU B 175 REMARK 465 ASP B 176 REMARK 465 LEU B 177 REMARK 465 MET B 178 REMARK 465 ARG B 179 REMARK 465 LEU B 180 REMARK 465 GLU B 181 REMARK 465 SER B 182 REMARK 465 VAL B 183 REMARK 465 PRO B 184 REMARK 465 THR B 185 REMARK 465 PRO B 186 REMARK 465 PRO B 187 REMARK 465 LYS B 188 REMARK 465 MET B 189 REMARK 465 ASP B 457 REMARK 465 SER B 458 REMARK 465 SER B 459 REMARK 465 GLY B 460 REMARK 465 GLU B 461 REMARK 465 ARG B 462 REMARK 465 ASP B 463 REMARK 465 ASN B 464 REMARK 465 GLY B 565 REMARK 465 ARG B 566 REMARK 465 HIS B 567 REMARK 465 GLY B 568 REMARK 465 GLN B 569 REMARK 465 ASP B 570 REMARK 465 PHE B 571 REMARK 465 ALA B 572 REMARK 465 GLY B 573 REMARK 465 THR B 574 REMARK 465 MET B 575 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 456 CG OD1 OD2 REMARK 470 SER B 468 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 556 CD GLU B 556 OE2 0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 26 -65.38 73.60 REMARK 500 LYS A 96 -57.68 -129.00 REMARK 500 VAL B 238 -122.03 48.30 REMARK 500 ASN B 316 19.50 -149.38 REMARK 500 TYR B 541 58.48 33.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU A 62 24.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1565 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 516 ND1 REMARK 620 2 CYS B 546 SG 108.6 REMARK 620 3 CYS B 549 SG 109.3 107.1 REMARK 620 4 CYS B 564 SG 107.9 113.2 110.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1566 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 532 SG REMARK 620 2 HIS B 554 ND1 98.2 REMARK 620 3 CYS B 529 SG 110.9 101.8 REMARK 620 4 CYS B 557 SG 115.6 115.8 112.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1565 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1566 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1E96 RELATED DB: PDB REMARK 900 STRUCTURE OF THE RAC/P67PHOX COMPLEX REMARK 900 RELATED ID: 1I4D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF RAC1-GDP REMARK 900 COMPLEXED WITHARFAPTIN (P21) REMARK 900 RELATED ID: 1FOE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RAC1 IN COMPLEX WITH REMARK 900 THE GUANINENUCLEOTIDE EXCHANGE REGION OF TIAM1 REMARK 900 RELATED ID: 1MH1 RELATED DB: PDB REMARK 900 SMALL G-PROTEIN REMARK 900 RELATED ID: 1I4L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF RAC1-GDP IN REMARK 900 COMPLEX WITHARFAPTIN (P41) REMARK 900 RELATED ID: 1HE1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE REMARK 900 GAP DOMAIN OF THE PSEUDOMONAS AERUGINOSA REMARK 900 EXOS TOXIN AND HUMAN RAC REMARK 900 RELATED ID: 1RYF RELATED DB: PDB REMARK 900 ALTERNATIVE SPLICING OF RAC1 GENERATES RAC1B REMARK 900 , A SELF-ACTIVATING GTPASE REMARK 900 RELATED ID: 1K1Z RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF N-TERMINAL SH3 DOMAIN REMARK 900 MUTANT(P33G) OFMURINE VAV REMARK 900 RELATED ID: 1RYH RELATED DB: PDB REMARK 900 ALTERNATIVE SPLICING OF RAC1 GENERATES RAC1B REMARK 900 , A SELF-ACTIVATING GTPASE REMARK 900 RELATED ID: 1HH4 RELATED DB: PDB REMARK 900 RAC1-RHOGDI COMPLEX INVOLVED IN NADPH REMARK 900 OXIDASE ACTIVATION REMARK 900 RELATED ID: 1GCP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF VAV SH3 DOMAIN REMARK 900 RELATED ID: 1G4U RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SALMONELLA TYROSINE REMARK 900 PHOSPHATASEAND GTPASE ACTIVATING PROTEIN SPTP REMARK 900 BOUND TO RAC1 REMARK 900 RELATED ID: 2FJU RELATED DB: PDB REMARK 900 ACTIVATED RAC1 BOUND TO ITS EFFECTOR REMARK 900 PHOSPHOLIPASE C BETA 2 REMARK 900 RELATED ID: 1F5X RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE Y174 AUTOINHIBITED DBL REMARK 900 HOMOLGY DOMAIN REMARK 900 RELATED ID: 1I4T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF RAC1-GMPPNP IN REMARK 900 COMPLEX WITHARFAPTIN REMARK 900 RELATED ID: 1GCQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF VAV AND GRB2 SH3 REMARK 900 DOMAINS DBREF 2VRW A 1 184 UNP P63000 RAC1_HUMAN 1 184 DBREF 2VRW B 170 575 UNP P27870 VAV_MOUSE 170 575 SEQRES 1 A 184 MET GLN ALA ILE LYS CYS VAL VAL VAL GLY ASP GLY ALA SEQRES 2 A 184 VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR ASN SEQRES 3 A 184 ALA PHE PRO GLY GLU TYR ILE PRO THR VAL PHE ASP ASN SEQRES 4 A 184 TYR SER ALA ASN VAL MET VAL ASP GLY LYS PRO VAL ASN SEQRES 5 A 184 LEU GLY LEU TRP ASP THR ALA GLY GLN GLU ASP TYR ASP SEQRES 6 A 184 ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL PHE SEQRES 7 A 184 LEU ILE CYS PHE SER LEU VAL SER PRO ALA SER PHE GLU SEQRES 8 A 184 ASN VAL ARG ALA LYS TRP TYR PRO GLU VAL ARG HIS HIS SEQRES 9 A 184 CYS PRO ASN THR PRO ILE ILE LEU VAL GLY THR LYS LEU SEQRES 10 A 184 ASP LEU ARG ASP ASP LYS ASP THR ILE GLU LYS LEU LYS SEQRES 11 A 184 GLU LYS LYS LEU THR PRO ILE THR TYR PRO GLN GLY LEU SEQRES 12 A 184 ALA MET ALA LYS GLU ILE GLY ALA VAL LYS TYR LEU GLU SEQRES 13 A 184 CYS SER ALA LEU THR GLN ARG GLY LEU LYS THR VAL PHE SEQRES 14 A 184 ASP GLU ALA ILE ARG ALA VAL LEU CYS PRO PRO PRO VAL SEQRES 15 A 184 LYS LYS SEQRES 1 B 406 GLY ASP GLU ILE TYR GLU ASP LEU MET ARG LEU GLU SER SEQRES 2 B 406 VAL PRO THR PRO PRO LYS MET THR GLU TYR ASP LYS ARG SEQRES 3 B 406 CYS CYS CYS LEU ARG GLU ILE GLN GLN THR GLU GLU LYS SEQRES 4 B 406 TYR THR ASP THR LEU GLY SER ILE GLN GLN HIS PHE MET SEQRES 5 B 406 LYS PRO LEU GLN ARG PHE LEU LYS PRO GLN ASP MET GLU SEQRES 6 B 406 THR ILE PHE VAL ASN ILE GLU GLU LEU PHE SER VAL HIS SEQRES 7 B 406 THR HIS PHE LEU LYS GLU LEU LYS ASP ALA LEU ALA GLY SEQRES 8 B 406 PRO GLY ALA THR THR LEU TYR GLN VAL PHE ILE LYS TYR SEQRES 9 B 406 LYS GLU ARG PHE LEU VAL TYR GLY ARG TYR CYS SER GLN SEQRES 10 B 406 VAL GLU SER ALA SER LYS HIS LEU ASP GLN VAL ALA THR SEQRES 11 B 406 ALA ARG GLU ASP VAL GLN MET LYS LEU GLU GLU CYS SER SEQRES 12 B 406 GLN ARG ALA ASN ASN GLY ARG PHE THR LEU ARG ASP LEU SEQRES 13 B 406 LEU MET VAL PRO MET GLN ARG VAL LEU LYS TYR HIS LEU SEQRES 14 B 406 LEU LEU GLN GLU LEU VAL LYS HIS THR GLN ASP ALA THR SEQRES 15 B 406 GLU LYS GLU ASN LEU ARG LEU ALA LEU ASP ALA MET ARG SEQRES 16 B 406 ASP LEU ALA GLN CYS VAL ASN GLU VAL LYS ARG ASP ASN SEQRES 17 B 406 GLU THR LEU ARG GLN ILE THR ASN PHE GLN LEU SER ILE SEQRES 18 B 406 GLU ASN LEU ASP GLN SER LEU ALA ASN TYR GLY ARG PRO SEQRES 19 B 406 LYS ILE ASP GLY GLU LEU LYS ILE THR SER VAL GLU ARG SEQRES 20 B 406 ARG SER LYS THR ASP ARG TYR ALA PHE LEU LEU ASP LYS SEQRES 21 B 406 ALA LEU LEU ILE CYS LYS ARG ARG GLY ASP SER TYR ASP SEQRES 22 B 406 LEU LYS ALA SER VAL ASN LEU HIS SER PHE GLN VAL ARG SEQRES 23 B 406 ASP ASP SER SER GLY GLU ARG ASP ASN LYS LYS TRP SER SEQRES 24 B 406 HIS MET PHE LEU LEU ILE GLU ASP GLN GLY ALA GLN GLY SEQRES 25 B 406 TYR GLU LEU PHE PHE LYS THR ARG GLU LEU LYS LYS LYS SEQRES 26 B 406 TRP MET GLU GLN PHE GLU MET ALA ILE SER ASN ILE TYR SEQRES 27 B 406 PRO GLU ASN ALA THR ALA ASN GLY HIS ASP PHE GLN MET SEQRES 28 B 406 PHE SER PHE GLU GLU THR THR SER CYS LYS ALA CYS GLN SEQRES 29 B 406 MET LEU LEU ARG GLY THR PHE TYR GLN GLY TYR ARG CYS SEQRES 30 B 406 TYR ARG CYS ARG ALA PRO ALA HIS LYS GLU CYS LEU GLY SEQRES 31 B 406 ARG VAL PRO PRO CYS GLY ARG HIS GLY GLN ASP PHE ALA SEQRES 32 B 406 GLY THR MET HET ZN B1565 1 HET ZN B1566 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 HOH *471(H2 O) HELIX 1 1 GLY A 15 ASN A 26 1 12 HELIX 2 2 LEU A 67 TYR A 72 5 6 HELIX 3 3 SER A 86 LYS A 96 1 11 HELIX 4 4 LYS A 96 CYS A 105 1 10 HELIX 5 5 LYS A 116 ASP A 121 1 6 HELIX 6 6 ASP A 122 LYS A 132 1 11 HELIX 7 7 THR A 138 ILE A 149 1 12 HELIX 8 8 GLY A 164 LEU A 177 1 14 HELIX 9 9 THR B 190 PHE B 220 1 31 HELIX 10 10 PHE B 220 GLN B 225 1 6 HELIX 11 11 LYS B 229 VAL B 238 1 10 HELIX 12 12 ASN B 239 GLY B 260 1 22 HELIX 13 13 PRO B 261 THR B 264 5 4 HELIX 14 14 THR B 265 LYS B 274 1 10 HELIX 15 15 GLU B 275 PHE B 277 5 3 HELIX 16 16 LEU B 278 ASN B 317 1 40 HELIX 17 17 THR B 321 LEU B 326 1 6 HELIX 18 18 MET B 327 LEU B 334 1 8 HELIX 19 19 LYS B 335 THR B 347 1 13 HELIX 20 20 ASP B 349 SER B 389 1 41 HELIX 21 21 SER B 396 GLY B 401 5 6 HELIX 22 22 THR B 488 TYR B 507 1 20 HELIX 23 23 THR B 512 HIS B 516 5 5 HELIX 24 24 HIS B 554 VAL B 561 5 8 SHEET 1 AA 6 TYR A 40 VAL A 46 0 SHEET 2 AA 6 LYS A 49 TRP A 56 -1 O LYS A 49 N VAL A 46 SHEET 3 AA 6 ALA A 3 GLY A 10 1 O ILE A 4 N GLY A 54 SHEET 4 AA 6 VAL A 77 SER A 83 1 O VAL A 77 N VAL A 7 SHEET 5 AA 6 ILE A 110 THR A 115 1 O ILE A 111 N ILE A 80 SHEET 6 AA 6 LYS A 153 GLU A 156 1 O LYS A 153 N LEU A 112 SHEET 1 BA 8 ILE B 390 GLU B 391 0 SHEET 2 BA 8 SER B 440 ASN B 448 1 O TYR B 441 N GLU B 391 SHEET 3 BA 8 ALA B 430 ARG B 437 -1 O LEU B 431 N VAL B 447 SHEET 4 BA 8 THR B 420 LEU B 427 -1 O TYR B 423 N CYS B 434 SHEET 5 BA 8 PRO B 403 THR B 412 -1 N LYS B 404 O LEU B 426 SHEET 6 BA 8 GLY B 481 PHE B 486 -1 O GLU B 483 N THR B 412 SHEET 7 BA 8 HIS B 469 GLU B 475 -1 O HIS B 469 N PHE B 486 SHEET 8 BA 8 PHE B 452 ARG B 455 -1 O GLN B 453 N ILE B 474 SHEET 1 BB 3 PHE B 518 PHE B 521 0 SHEET 2 BB 3 GLY B 543 CYS B 546 -1 O GLY B 543 N PHE B 521 SHEET 3 BB 3 PRO B 552 ALA B 553 -1 O ALA B 553 N TYR B 544 LINK ZN ZN B1565 ND1 HIS B 516 1555 1555 2.10 LINK ZN ZN B1565 SG CYS B 546 1555 1555 2.29 LINK ZN ZN B1565 SG CYS B 549 1555 1555 2.29 LINK ZN ZN B1565 SG CYS B 564 1555 1555 2.43 LINK ZN ZN B1566 ND1 HIS B 554 1555 1555 2.16 LINK ZN ZN B1566 SG CYS B 529 1555 1555 2.32 LINK ZN ZN B1566 SG CYS B 557 1555 1555 2.29 LINK ZN ZN B1566 SG CYS B 532 1555 1555 2.30 SITE 1 AC1 4 HIS B 516 CYS B 546 CYS B 549 CYS B 564 SITE 1 AC2 4 CYS B 529 CYS B 532 HIS B 554 CYS B 557 CRYST1 122.763 62.143 103.281 90.00 118.80 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008146 0.000000 0.004478 0.00000 SCALE2 0.000000 0.016092 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011049 0.00000