HEADER OXIDOREDUCTASE 26-JUL-07 2QQS TITLE JMJD2A TANDEM TUDOR DOMAINS IN COMPLEX WITH A TRIMETHYLATED TITLE 2 HISTONE H4-K20 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION COMPND 3 PROTEIN 3A; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: JMJD2A HYBRID TUDOR DOMAINS (RESIDUES: 897-1011); COMPND 6 SYNONYM: JUMONJI DOMAIN-CONTAINING PROTEIN 2A; COMPND 7 EC: 1.14.11.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: METHYLATED HISTONE H4 PEPTIDE; COMPND 11 CHAIN: C, D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: JMJD2A, JHDM3A, JMJD2, KIAA0677; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTEV; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SYNTHETIC METHYALTED HISTONE H4 PEPTIDE SOURCE 14 DERIVED FROM HUMAN SEQUENCE. KEYWDS HISTONE LYSINE DEMETHYLASE, METAL BINDING PROTEIN, PROTEIN- KEYWDS 2 METHYLATED PEPTIDE COMPLEX, CHROMATIN REGULATOR, KEYWDS 3 DIOXYGENASE, HOST-VIRUS INTERACTION, IRON, METAL-BINDING, KEYWDS 4 NUCLEUS, OXIDOREDUCTASE, PHOSPHORYLATION, POLYMORPHISM, KEYWDS 5 TRANSCRIPTION, TRANSCRIPTION REGULATION, ZINC, ZINC-FINGER EXPDTA X-RAY DIFFRACTION AUTHOR J.LEE,M.V.BOTUYAN,G.MER REVDAT 4 24-FEB-09 2QQS 1 VERSN REVDAT 3 29-JAN-08 2QQS 1 JRNL REVDAT 2 08-JAN-08 2QQS 1 JRNL REVDAT 1 11-DEC-07 2QQS 0 JRNL AUTH J.LEE,J.R.THOMPSON,M.V.BOTUYAN,G.MER JRNL TITL DISTINCT BINDING MODES SPECIFY THE RECOGNITION OF JRNL TITL 2 METHYLATED HISTONES H3K4 AND H4K20 BY JMJD2A-TUDOR. JRNL REF NAT.STRUCT.MOL.BIOL. V. 15 109 2008 JRNL REFN ISSN 1545-9993 JRNL PMID 18084306 JRNL DOI 10.1038/NSMB1326 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 85.6 REMARK 3 NUMBER OF REFLECTIONS : 5184 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 237 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 264 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 60.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.5630 REMARK 3 BIN FREE R VALUE SET COUNT : 13 REMARK 3 BIN FREE R VALUE : 0.8000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1866 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 63 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.92000 REMARK 3 B22 (A**2) : -0.66000 REMARK 3 B33 (A**2) : -1.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.520 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.325 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.388 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.881 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.824 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1906 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2580 ; 1.559 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 225 ; 9.835 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;40.230 ;24.340 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 308 ;21.071 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;18.942 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 275 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1483 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 908 ; 0.264 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1267 ; 0.321 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 92 ; 0.214 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.221 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.243 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1146 ; 0.494 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1838 ; 0.858 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 840 ; 1.456 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 742 ; 2.031 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2QQS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-07. REMARK 100 THE RCSB ID CODE IS RCSB043938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5184 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.820 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.92 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.39600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2QQR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 13.84450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS MADE OF ONE MOLECULE OF JMJD2A REMARK 300 AND ONE MOLECULE OF METHYLATED HISTONE H4. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 894 REMARK 465 HIS A 895 REMARK 465 MET A 896 REMARK 465 LEU A 1006 REMARK 465 ASP A 1007 REMARK 465 GLU A 1008 REMARK 465 GLU A 1009 REMARK 465 LEU A 1010 REMARK 465 PRO A 1011 REMARK 465 GLY B 894 REMARK 465 HIS B 895 REMARK 465 MET B 896 REMARK 465 GLN B 897 REMARK 465 SER B 898 REMARK 465 ASP B 1007 REMARK 465 GLU B 1008 REMARK 465 GLU B 1009 REMARK 465 LEU B 1010 REMARK 465 PRO B 1011 REMARK 465 LYS C 16 REMARK 465 LEU C 22 REMARK 465 ARG C 23 REMARK 465 ASP C 24 REMARK 465 ASN C 25 REMARK 465 LYS D 16 REMARK 465 ASP D 24 REMARK 465 ASN D 25 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 961 ND1 HIS C 18 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 966 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 933 6.13 -61.41 REMARK 500 SER A 936 -167.87 -100.78 REMARK 500 ALA A 975 -154.35 -140.13 REMARK 500 LYS A 976 111.97 -166.08 REMARK 500 LYS A 999 -105.25 -93.90 REMARK 500 ARG A1000 -71.03 -37.52 REMARK 500 CYS B 917 -169.62 -128.24 REMARK 500 GLU B 918 119.29 -160.45 REMARK 500 ASP B 933 -11.14 -49.79 REMARK 500 VAL B 978 -63.87 -120.23 REMARK 500 THR B1005 -148.94 -147.50 REMARK 500 HIS C 18 106.43 64.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 999 ARG A 1000 -138.46 REMARK 500 ARG A 1000 ASP A 1001 -61.31 REMARK 500 ASP A 1001 ASP A 1002 125.81 REMARK 500 HIS C 18 ARG C 19 -30.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 54 DISTANCE = 5.47 ANGSTROMS REMARK 525 HOH A 63 DISTANCE = 7.00 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QQR RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE ABSENCE OF METHYLATED PEPTIDE REMARK 900 LIGAND. DBREF 2QQS A 897 1011 UNP O75164 JHD3A_HUMAN 897 1011 DBREF 2QQS B 897 1011 UNP O75164 JHD3A_HUMAN 897 1011 DBREF 2QQS C 16 25 PDB 2QQS 2QQS 16 25 DBREF 2QQS D 16 25 PDB 2QQS 2QQS 16 25 SEQADV 2QQS GLY A 894 UNP O75164 EXPRESSION TAG SEQADV 2QQS HIS A 895 UNP O75164 EXPRESSION TAG SEQADV 2QQS MET A 896 UNP O75164 EXPRESSION TAG SEQADV 2QQS GLY B 894 UNP O75164 EXPRESSION TAG SEQADV 2QQS HIS B 895 UNP O75164 EXPRESSION TAG SEQADV 2QQS MET B 896 UNP O75164 EXPRESSION TAG SEQRES 1 A 118 GLY HIS MET GLN SER ILE THR ALA GLY GLN LYS VAL ILE SEQRES 2 A 118 SER LYS HIS LYS ASN GLY ARG PHE TYR GLN CYS GLU VAL SEQRES 3 A 118 VAL ARG LEU THR THR GLU THR PHE TYR GLU VAL ASN PHE SEQRES 4 A 118 ASP ASP GLY SER PHE SER ASP ASN LEU TYR PRO GLU ASP SEQRES 5 A 118 ILE VAL SER GLN ASP CYS LEU GLN PHE GLY PRO PRO ALA SEQRES 6 A 118 GLU GLY GLU VAL VAL GLN VAL ARG TRP THR ASP GLY GLN SEQRES 7 A 118 VAL TYR GLY ALA LYS PHE VAL ALA SER HIS PRO ILE GLN SEQRES 8 A 118 MET TYR GLN VAL GLU PHE GLU ASP GLY SER GLN LEU VAL SEQRES 9 A 118 VAL LYS ARG ASP ASP VAL TYR THR LEU ASP GLU GLU LEU SEQRES 10 A 118 PRO SEQRES 1 B 118 GLY HIS MET GLN SER ILE THR ALA GLY GLN LYS VAL ILE SEQRES 2 B 118 SER LYS HIS LYS ASN GLY ARG PHE TYR GLN CYS GLU VAL SEQRES 3 B 118 VAL ARG LEU THR THR GLU THR PHE TYR GLU VAL ASN PHE SEQRES 4 B 118 ASP ASP GLY SER PHE SER ASP ASN LEU TYR PRO GLU ASP SEQRES 5 B 118 ILE VAL SER GLN ASP CYS LEU GLN PHE GLY PRO PRO ALA SEQRES 6 B 118 GLU GLY GLU VAL VAL GLN VAL ARG TRP THR ASP GLY GLN SEQRES 7 B 118 VAL TYR GLY ALA LYS PHE VAL ALA SER HIS PRO ILE GLN SEQRES 8 B 118 MET TYR GLN VAL GLU PHE GLU ASP GLY SER GLN LEU VAL SEQRES 9 B 118 VAL LYS ARG ASP ASP VAL TYR THR LEU ASP GLU GLU LEU SEQRES 10 B 118 PRO SEQRES 1 C 10 LYS ARG HIS ARG M3L VAL LEU ARG ASP ASN SEQRES 1 D 10 LYS ARG HIS ARG M3L VAL LEU ARG ASP ASN MODRES 2QQS M3L C 20 LYS N-TRIMETHYLLYSINE MODRES 2QQS M3L D 20 LYS N-TRIMETHYLLYSINE HET M3L C 20 12 HET M3L D 20 12 HETNAM M3L N-TRIMETHYLLYSINE FORMUL 3 M3L 2(C9 H21 N2 O2 1+) FORMUL 5 HOH *63(H2 O) HELIX 1 1 TYR A 942 ILE A 946 5 5 HELIX 2 2 ASP A 950 GLY A 955 1 6 HELIX 3 3 TYR B 942 ILE B 946 5 5 HELIX 4 4 ASP B 950 GLY B 955 1 6 HELIX 5 5 ASP B 1001 VAL B 1003 5 3 SHEET 1 A 3 PHE A 914 GLU A 918 0 SHEET 2 A 3 LYS A 904 LYS A 908 -1 N VAL A 905 O CYS A 917 SHEET 3 A 3 VAL A1003 TYR A1004 -1 O TYR A1004 N ILE A 906 SHEET 1 B 4 SER A 938 LEU A 941 0 SHEET 2 B 4 ARG A 921 VAL A 930 -1 N TYR A 928 O LEU A 941 SHEET 3 B 4 VAL A 972 GLU A 989 -1 O ILE A 983 N GLU A 925 SHEET 4 B 4 VAL A 962 ARG A 966 -1 N VAL A 965 O TYR A 973 SHEET 1 C 4 SER A 938 LEU A 941 0 SHEET 2 C 4 ARG A 921 VAL A 930 -1 N TYR A 928 O LEU A 941 SHEET 3 C 4 VAL A 972 GLU A 989 -1 O ILE A 983 N GLU A 925 SHEET 4 C 4 GLN A 995 VAL A 998 -1 O VAL A 998 N TYR A 986 SHEET 1 D 2 ILE B 906 LYS B 908 0 SHEET 2 D 2 PHE B 914 GLN B 916 -1 O TYR B 915 N SER B 907 SHEET 1 E 4 PHE B 937 LEU B 941 0 SHEET 2 E 4 VAL B 919 PHE B 932 -1 N TYR B 928 O LEU B 941 SHEET 3 E 4 VAL B 972 GLU B 989 -1 O ILE B 983 N GLU B 925 SHEET 4 E 4 VAL B 962 ARG B 966 -1 N VAL B 963 O ALA B 975 SHEET 1 F 4 PHE B 937 LEU B 941 0 SHEET 2 F 4 VAL B 919 PHE B 932 -1 N TYR B 928 O LEU B 941 SHEET 3 F 4 VAL B 972 GLU B 989 -1 O ILE B 983 N GLU B 925 SHEET 4 F 4 GLN B 995 LYS B 999 -1 O LEU B 996 N VAL B 988 LINK C ARG C 19 N M3L C 20 1555 1555 1.33 LINK C M3L C 20 N VAL C 21 1555 1555 1.45 LINK C ARG D 19 N M3L D 20 1555 1555 1.34 LINK C M3L D 20 N VAL D 21 1555 1555 1.34 CISPEP 1 ALA B 901 GLY B 902 0 -1.41 CISPEP 2 LEU D 22 ARG D 23 0 -1.73 CRYST1 54.970 27.689 82.424 90.00 90.77 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018192 0.000000 0.000244 0.00000 SCALE2 0.000000 0.036115 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012133 0.00000