HEADER TRANSFERASE 09-JAN-07 2OH4 TITLE CRYSTAL STRUCTURE OF VEGFR2 WITH A BENZIMIDAZOLE-UREA INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN; COMPND 5 SYNONYM: VEGFR-2,FETAL LIVER KINASE 1,FLK-1,KINASE INSERT DOMAIN COMPND 6 RECEPTOR,KDR,PROTEIN-TYROSINE KINASE RECEPTOR FLK-1; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KDR, FLK1, VEGFR2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2, TYROSINE-PROTEIN KEYWDS 2 KINASE, ANGIOGENESIS, ATP-BINDING, PHOSPHORYLATION, KINASE INSERT KEYWDS 3 DOMAIN RECEPTOR, PROTEIN-TYROSINE KINASE RECEPTOR FLK-1, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.T.NOLTE,L.WANG REVDAT 6 30-AUG-23 2OH4 1 REMARK LINK REVDAT 5 18-OCT-17 2OH4 1 REMARK REVDAT 4 14-JUN-17 2OH4 1 COMPND SOURCE DBREF REVDAT 3 13-JUL-11 2OH4 1 VERSN REVDAT 2 24-FEB-09 2OH4 1 VERSN REVDAT 1 18-SEP-07 2OH4 0 JRNL AUTH M.HASEGAWA,N.NISHIGAKI,Y.WASHIO,K.KANO,P.A.HARRIS,H.SATO, JRNL AUTH 2 I.MORI,R.I.WEST,M.SHIBAHARA,H.TOYODA,L.WANG,R.T.NOLTE, JRNL AUTH 3 J.M.VEAL,M.CHEUNG JRNL TITL DISCOVERY OF NOVEL BENZIMIDAZOLES AS POTENT INHIBITORS OF JRNL TITL 2 TIE-2 AND VEGFR-2 TYROSINE KINASE RECEPTORS. JRNL REF J.MED.CHEM. V. 50 4453 2007 JRNL REFN ISSN 0022-2623 JRNL PMID 17676829 JRNL DOI 10.1021/JM0611051 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 22437 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 726 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1525 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.1860 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.2060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2378 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : 1.58000 REMARK 3 B33 (A**2) : -1.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.191 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.332 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2515 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1716 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3416 ; 1.163 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4161 ; 0.878 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 305 ; 5.705 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;33.392 ;23.182 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 422 ;12.019 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.776 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 362 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2770 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 522 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 502 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1813 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1237 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1216 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 156 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.092 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 25 ; 0.189 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.122 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1577 ; 0.720 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 610 ; 0.144 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2435 ; 1.141 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1113 ; 1.509 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 981 ; 2.330 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 817 A 920 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1180 34.2230 6.1800 REMARK 3 T TENSOR REMARK 3 T11: -0.1823 T22: -0.2247 REMARK 3 T33: -0.2266 T12: -0.0162 REMARK 3 T13: 0.0008 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 2.0318 L22: 4.0401 REMARK 3 L33: 4.3564 L12: 0.3844 REMARK 3 L13: 0.1884 L23: 0.2199 REMARK 3 S TENSOR REMARK 3 S11: 0.0648 S12: 0.0881 S13: 0.0374 REMARK 3 S21: -0.0414 S22: -0.0357 S23: 0.2627 REMARK 3 S31: 0.1103 S32: -0.1636 S33: -0.0291 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 921 A 1166 REMARK 3 ORIGIN FOR THE GROUP (A): 7.6840 41.4310 32.3890 REMARK 3 T TENSOR REMARK 3 T11: -0.2583 T22: -0.1306 REMARK 3 T33: -0.2605 T12: -0.0241 REMARK 3 T13: 0.0030 T23: -0.0344 REMARK 3 L TENSOR REMARK 3 L11: 2.1394 L22: 2.6008 REMARK 3 L33: 5.2449 L12: 0.3371 REMARK 3 L13: 0.5765 L23: 1.1265 REMARK 3 S TENSOR REMARK 3 S11: -0.0314 S12: -0.2041 S13: -0.0226 REMARK 3 S21: 0.0828 S22: -0.1230 S23: 0.1690 REMARK 3 S31: 0.1537 S32: -0.6161 S33: 0.1544 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OH4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041128. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22437 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 47.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.17900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.029 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1YWN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.18500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.87700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.12500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.87700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.18500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.12500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 803 REMARK 465 MET A 804 REMARK 465 ASP A 805 REMARK 465 PRO A 806 REMARK 465 ASP A 807 REMARK 465 GLU A 808 REMARK 465 LEU A 809 REMARK 465 PRO A 810 REMARK 465 LEU A 811 REMARK 465 ASP A 812 REMARK 465 GLU A 813 REMARK 465 LYS A 988 REMARK 465 THR A 989 REMARK 465 PRO A 990 REMARK 465 GLU A 991 REMARK 465 ASP A 992 REMARK 465 LEU A 993 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 814 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 817 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 836 CE NZ REMARK 470 PHE A 843 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 861 CD NE CZ NH1 NH2 REMARK 470 ILE A 913 CG2 REMARK 470 LYS A1037 CD CE NZ REMARK 470 GLU A1111 CG CD OE1 OE2 REMARK 470 GLN A1168 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 856 -25.37 75.91 REMARK 500 ALA A 858 48.70 -87.62 REMARK 500 VAL A 897 121.84 -35.93 REMARK 500 PRO A 906 151.19 -45.21 REMARK 500 ARG A1025 -23.47 85.59 REMARK 500 ASP A1026 57.38 -140.62 REMARK 500 SER A1035 -168.72 -102.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 103 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH A 134 DISTANCE = 6.82 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GIG A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1VR2 RELATED DB: PDB REMARK 900 UNLIGANDED STRUCTURE REMARK 900 RELATED ID: 1Y6A RELATED DB: PDB REMARK 900 LIGANDED STRUCTURE REMARK 900 RELATED ID: 1Y6B RELATED DB: PDB REMARK 900 LIGANDED STRUCTURE REMARK 900 RELATED ID: 1YWM RELATED DB: PDB REMARK 900 LIGANDED STRUCTURE DBREF 2OH4 A 804 989 UNP P35968 VGFR2_HUMAN 806 940 DBREF 2OH4 A 990 1169 UNP P35968 VGFR2_HUMAN 992 1171 SEQADV 2OH4 HIS A 803 UNP P35968 EXPRESSION TAG SEQADV 2OH4 ASN A 833 UNP P35968 LYS 835 CONFLICT SEQRES 1 A 316 HIS MET ASP PRO ASP GLU LEU PRO LEU ASP GLU HIS CYS SEQRES 2 A 316 GLU ARG LEU PRO TYR ASP ALA SER LYS TRP GLU PHE PRO SEQRES 3 A 316 ARG ASP ARG LEU ASN LEU GLY LYS PRO LEU GLY ARG GLY SEQRES 4 A 316 ALA PHE GLY GLN VAL ILE GLU ALA ASP ALA PHE GLY ILE SEQRES 5 A 316 ASP LYS THR ALA THR CYS ARG THR VAL ALA VAL LYS MET SEQRES 6 A 316 LEU LYS GLU GLY ALA THR HIS SER GLU HIS ARG ALA LEU SEQRES 7 A 316 MET SER GLU LEU LYS ILE LEU ILE HIS ILE GLY HIS HIS SEQRES 8 A 316 LEU ASN VAL VAL ASN LEU LEU GLY ALA CYS THR LYS PRO SEQRES 9 A 316 GLY GLY PRO LEU MET VAL ILE VAL GLU PHE CYS LYS PHE SEQRES 10 A 316 GLY ASN LEU SER THR TYR LEU ARG SER LYS ARG ASN GLU SEQRES 11 A 316 PHE VAL PRO TYR LYS THR PRO GLU ASP LEU TYR LYS ASP SEQRES 12 A 316 PHE LEU THR LEU GLU HIS LEU ILE CYS TYR SER PHE GLN SEQRES 13 A 316 VAL ALA LYS GLY MET GLU PHE LEU ALA SER ARG LYS CYS SEQRES 14 A 316 ILE HIS ARG ASP LEU ALA ALA ARG ASN ILE LEU LEU SER SEQRES 15 A 316 GLU LYS ASN VAL VAL LYS ILE CYS ASP PHE GLY LEU ALA SEQRES 16 A 316 ARG ASP ILE PTR LYS ASP PRO ASP PTR VAL ARG LYS GLY SEQRES 17 A 316 ASP ALA ARG LEU PRO LEU LYS TRP MET ALA PRO GLU THR SEQRES 18 A 316 ILE PHE ASP ARG VAL TYR THR ILE GLN SER ASP VAL TRP SEQRES 19 A 316 SER PHE GLY VAL LEU LEU TRP GLU ILE PHE SER LEU GLY SEQRES 20 A 316 ALA SER PRO TYR PRO GLY VAL LYS ILE ASP GLU GLU PHE SEQRES 21 A 316 CYS ARG ARG LEU LYS GLU GLY THR ARG MET ARG ALA PRO SEQRES 22 A 316 ASP TYR THR THR PRO GLU MET TYR GLN THR MET LEU ASP SEQRES 23 A 316 CYS TRP HIS GLY GLU PRO SER GLN ARG PRO THR PHE SER SEQRES 24 A 316 GLU LEU VAL GLU HIS LEU GLY ASN LEU LEU GLN ALA ASN SEQRES 25 A 316 ALA GLN GLN ASP MODRES 2OH4 PTR A 1052 TYR MODIFIED RESIDUE MODRES 2OH4 PTR A 1057 TYR MODIFIED RESIDUE HET PTR A1052 16 HET PTR A1057 16 HET SO4 A 301 5 HET SO4 A 302 5 HET GIG A 303 36 HETNAM PTR O-PHOSPHOTYROSINE HETNAM SO4 SULFATE ION HETNAM GIG METHYL (5-{4-[({[2-FLUORO-5-(TRIFLUOROMETHYL) HETNAM 2 GIG PHENYL]AMINO}CARBONYL)AMINO]PHENOXY}-1H-BENZIMIDAZOL- HETNAM 3 GIG 2-YL)CARBAMATE HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 PTR 2(C9 H12 N O6 P) FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 GIG C23 H17 F4 N5 O4 FORMUL 5 HOH *208(H2 O) HELIX 1 1 ASP A 821 GLU A 826 1 6 HELIX 2 2 PRO A 828 ASP A 830 5 3 HELIX 3 3 THR A 873 GLY A 891 1 19 HELIX 4 4 LEU A 922 LYS A 929 1 8 HELIX 5 5 THR A 999 ARG A 1020 1 22 HELIX 6 6 ALA A 1028 ARG A 1030 5 3 HELIX 7 7 GLU A 1036 ASN A 1038 5 3 HELIX 8 8 LEU A 1065 MET A 1070 5 6 HELIX 9 9 ALA A 1071 ASP A 1077 1 7 HELIX 10 10 THR A 1081 SER A 1098 1 18 HELIX 11 11 ASP A 1110 GLY A 1120 1 11 HELIX 12 12 THR A 1130 TRP A 1141 1 12 HELIX 13 13 GLU A 1144 ARG A 1148 5 5 HELIX 14 14 THR A 1150 ALA A 1166 1 17 SHEET 1 A 5 LEU A 832 GLY A 841 0 SHEET 2 A 5 GLY A 844 PHE A 852 -1 O GLU A 848 N GLY A 835 SHEET 3 A 5 CYS A 860 MET A 867 -1 O ARG A 861 N ALA A 851 SHEET 4 A 5 MET A 911 GLU A 915 -1 O VAL A 912 N LYS A 866 SHEET 5 A 5 LEU A 899 CYS A 903 -1 N LEU A 900 O ILE A 913 SHEET 1 B 3 GLY A 920 ASN A 921 0 SHEET 2 B 3 ILE A1032 LEU A1034 -1 O LEU A1034 N GLY A 920 SHEET 3 B 3 VAL A1040 ILE A1042 -1 O LYS A1041 N LEU A1033 LINK C ILE A1051 N PTR A1052 1555 1555 1.34 LINK C PTR A1052 N LYS A1053 1555 1555 1.33 LINK C ASP A1056 N PTR A1057 1555 1555 1.33 LINK C PTR A1057 N VAL A1058 1555 1555 1.33 SITE 1 AC1 6 HOH A 76 PHE A1045 GLY A1046 LEU A1047 SITE 2 AC1 6 ALA A1048 ARG A1049 SITE 1 AC2 3 LEU A 838 GLY A 839 ARG A 840 SITE 1 AC3 20 HOH A 167 LEU A 838 VAL A 846 ALA A 864 SITE 2 AC3 20 GLU A 883 VAL A 896 VAL A 897 VAL A 914 SITE 3 AC3 20 GLU A 915 PHE A 916 CYS A 917 LYS A 918 SITE 4 AC3 20 GLY A 920 LEU A1017 HIS A1024 LEU A1033 SITE 5 AC3 20 ILE A1042 CYS A1043 ASP A1044 PHE A1045 CRYST1 38.370 94.250 95.754 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026062 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010610 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010443 0.00000