HEADER SIGNALING PROTEIN 05-JAN-12 2LNW TITLE IDENTIFICATION AND STRUCTURAL BASIS FOR A NOVEL INTERACTION BETWEEN TITLE 2 VAV2 AND ARAP3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANINE NUCLEOTIDE EXCHANGE FACTOR VAV2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 659-771; COMPND 5 SYNONYM: VAV-2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ARF-GAP WITH RHO-GAP DOMAIN, ANK REPEAT AND PH DOMAIN- COMPND 9 CONTAINING PROTEIN 3; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 1404-1412; COMPND 12 SYNONYM: CENTAURIN-DELTA-3, CNT-D3; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VAV2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. KEYWDS SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.WU,J.ZHANG,J.WU,Y.SHI REVDAT 2 14-JUN-23 2LNW 1 REMARK SEQADV LINK REVDAT 1 21-NOV-12 2LNW 0 JRNL AUTH B.WU,F.WANG,J.ZHANG,Z.ZHANG,L.QIN,J.PENG,F.LI,J.LIU,G.LU, JRNL AUTH 2 Q.GONG,X.YAO,J.WU,Y.SHI JRNL TITL IDENTIFICATION AND STRUCTURAL BASIS FOR A NOVEL INTERACTION JRNL TITL 2 BETWEEN VAV2 AND ARAP3. JRNL REF J.STRUCT.BIOL. V. 180 84 2012 JRNL REFN ISSN 1047-8477 JRNL PMID 22750419 JRNL DOI 10.1016/J.JSB.2012.06.011 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNS REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE, REMARK 3 JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LNW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000102614. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 ENTITY_1-1, 3 MM ENTITY_2-2, 5 REMARK 210 MM POTASSIUM PHOSPHATE-3, 20 MM REMARK 210 SODIUM PHOSPHATE-4, 5 MM DTT-5, REMARK 210 2 MM EDTA-6, 75 MM SODIUM REMARK 210 CHLORIDE-7, 90% H2O/10% D2O; 1 REMARK 210 MM [U-100% 13C; U-100% 15N] REMARK 210 ENTITY_1-8, 3 MM ENTITY_2-9, 5 REMARK 210 MM POTASSIUM PHOSPHATE-10, 75 MM REMARK 210 SODIUM CHLORIDE-11, 5 MM DTT-12, REMARK 210 2 MM EDTA-13, 20 MM SODIUM REMARK 210 PHOSPHATE-14, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HNCO; 3D HCACO; 3D REMARK 210 HBHA(CO)NH; 3D C(CO)NH; 3D 1H- REMARK 210 15N NOESY; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D HCCH-COSY; 3D 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 650 REMARK 465 GLY A 651 REMARK 465 HIS A 652 REMARK 465 HIS A 653 REMARK 465 HIS A 654 REMARK 465 HIS A 655 REMARK 465 HIS A 656 REMARK 465 HIS A 657 REMARK 465 MET A 658 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 663 48.09 -100.41 REMARK 500 1 GLU A 665 118.39 70.04 REMARK 500 1 GLU A 703 -70.51 -91.49 REMARK 500 1 HIS A 730 133.01 -173.05 REMARK 500 1 ALA A 734 -51.90 -143.47 REMARK 500 1 ASP A 760 36.14 -150.25 REMARK 500 1 LYS A 764 -54.89 -128.86 REMARK 500 1 VAL B1407 -73.01 -88.59 REMARK 500 1 PTR B1408 -177.83 58.96 REMARK 500 1 GLU B1410 150.66 66.42 REMARK 500 2 PRO A 661 105.10 -51.39 REMARK 500 2 SER A 663 -60.64 -152.97 REMARK 500 2 PRO A 701 98.15 -48.48 REMARK 500 2 GLU A 703 -52.26 -168.26 REMARK 500 2 ASP A 760 53.86 -155.03 REMARK 500 2 SER A 769 73.08 60.28 REMARK 500 2 ARG A 770 36.12 -160.67 REMARK 500 2 VAL B1407 -59.12 73.80 REMARK 500 3 ARG A 664 -63.72 72.92 REMARK 500 3 GLU A 665 149.50 68.62 REMARK 500 3 ASN A 677 95.95 63.40 REMARK 500 3 SER A 692 30.26 -93.41 REMARK 500 3 PRO A 701 97.74 -50.89 REMARK 500 3 GLU A 703 -65.33 -91.87 REMARK 500 3 HIS A 730 140.95 -176.82 REMARK 500 3 GLU A 733 40.14 -101.78 REMARK 500 3 ASP A 760 43.61 -163.63 REMARK 500 3 LEU A 763 99.49 -65.84 REMARK 500 3 LYS A 764 -66.48 -90.09 REMARK 500 3 SER A 769 70.41 52.88 REMARK 500 3 VAL B1407 83.64 58.19 REMARK 500 4 ARG A 664 -65.18 -139.01 REMARK 500 4 ASP A 726 -80.36 61.73 REMARK 500 4 ASN A 727 30.31 -163.71 REMARK 500 4 ALA A 734 -61.85 -156.34 REMARK 500 4 ASP A 760 41.39 -157.10 REMARK 500 4 PRO A 766 -172.87 -67.86 REMARK 500 4 VAL B1407 -57.30 -131.09 REMARK 500 4 PTR B1408 -176.72 65.77 REMARK 500 5 PRO A 672 -173.51 -58.87 REMARK 500 5 TRP A 673 27.29 44.81 REMARK 500 5 ALA A 691 -167.06 63.38 REMARK 500 5 GLU A 703 -63.04 -99.87 REMARK 500 5 HIS A 730 145.81 -174.24 REMARK 500 5 LYS A 764 -61.44 -140.31 REMARK 500 5 LYS A 768 -63.13 -123.96 REMARK 500 5 SER A 769 134.14 179.43 REMARK 500 5 VAL B1407 -73.48 64.41 REMARK 500 5 PTR B1408 157.52 66.59 REMARK 500 6 ARG A 660 90.74 62.45 REMARK 500 REMARK 500 THIS ENTRY HAS 180 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18182 RELATED DB: BMRB REMARK 900 RELATED ID: 2LNX RELATED DB: PDB DBREF 2LNW A 659 771 UNP P52735 VAV2_HUMAN 659 771 DBREF 2LNW B 1404 1412 UNP Q8WWN8 ARAP3_HUMAN 1404 1412 SEQADV 2LNW MET A 650 UNP P52735 EXPRESSION TAG SEQADV 2LNW GLY A 651 UNP P52735 EXPRESSION TAG SEQADV 2LNW HIS A 652 UNP P52735 EXPRESSION TAG SEQADV 2LNW HIS A 653 UNP P52735 EXPRESSION TAG SEQADV 2LNW HIS A 654 UNP P52735 EXPRESSION TAG SEQADV 2LNW HIS A 655 UNP P52735 EXPRESSION TAG SEQADV 2LNW HIS A 656 UNP P52735 EXPRESSION TAG SEQADV 2LNW HIS A 657 UNP P52735 EXPRESSION TAG SEQADV 2LNW MET A 658 UNP P52735 EXPRESSION TAG SEQRES 1 A 122 MET GLY HIS HIS HIS HIS HIS HIS MET SER ARG PRO PRO SEQRES 2 A 122 SER ARG GLU ILE ASP TYR THR ALA TYR PRO TRP PHE ALA SEQRES 3 A 122 GLY ASN MET GLU ARG GLN GLN THR ASP ASN LEU LEU LYS SEQRES 4 A 122 SER HIS ALA SER GLY THR TYR LEU ILE ARG GLU ARG PRO SEQRES 5 A 122 ALA GLU ALA GLU ARG PHE ALA ILE SER ILE LYS PHE ASN SEQRES 6 A 122 ASP GLU VAL LYS HIS ILE LYS VAL VAL GLU LYS ASP ASN SEQRES 7 A 122 TRP ILE HIS ILE THR GLU ALA LYS LYS PHE ASP SER LEU SEQRES 8 A 122 LEU GLU LEU VAL GLU TYR TYR GLN CYS HIS SER LEU LYS SEQRES 9 A 122 GLU SER PHE LYS GLN LEU ASP THR THR LEU LYS TYR PRO SEQRES 10 A 122 TYR LYS SER ARG GLU SEQRES 1 B 9 GLU GLU PRO VAL PTR GLU GLU VAL GLY MODRES 2LNW PTR B 1408 TYR O-PHOSPHOTYROSINE HET PTR B1408 24 HETNAM PTR O-PHOSPHOTYROSINE HETSYN PTR PHOSPHONOTYROSINE FORMUL 2 PTR C9 H12 N O6 P HELIX 1 1 GLU A 679 HIS A 690 1 12 HELIX 2 2 SER A 739 HIS A 750 1 12 HELIX 3 3 SER A 751 SER A 755 5 5 SHEET 1 A 4 TYR A 695 GLU A 699 0 SHEET 2 A 4 GLU A 705 LYS A 712 -1 O ALA A 708 N ARG A 698 SHEET 3 A 4 VAL A 717 LYS A 725 -1 O ILE A 720 N ILE A 709 SHEET 4 A 4 TRP A 728 HIS A 730 -1 O HIS A 730 N VAL A 723 LINK C VAL B1407 N PTR B1408 1555 1555 1.34 LINK C PTR B1408 N GLU B1409 1555 1555 1.34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20