HEADER MEMBRANE PROTEIN 30-OCT-08 2KA2 TITLE SOLUTION NMR STRUCTURE OF BNIP3 TRANSMEMBRANE PEPTIDE DIMER IN TITLE 2 DETERGENT MICELLES WITH HIS173-SER172 INTERMONOMER HYDROGEN BOND TITLE 3 RESTRAINTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BCL2/ADENOVIRUS E1B 19 KDA PROTEIN-INTERACTING PROTEIN 3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TRANSMEMBRANE DOMAIN, RESIDUES 154-188; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BNIP3, NIP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET3A KEYWDS INTEGRAL MEMBRANE PROTEIN, MEMBRANE HELIX-HELIX INTERACTIONS, BNIP3, KEYWDS 2 TRANSMEMBRANE DOMAIN, HOMODIMER, MEMBRANE PROTEIN FOLDING, KEYWDS 3 APOPTOSIS, HOST-VIRUS INTERACTION, MITOCHONDRION, PHOSPHOPROTEIN, KEYWDS 4 MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR E.S.SULISTIJO,K.R.MACKENZIE REVDAT 2 16-MAR-22 2KA2 1 REMARK REVDAT 1 23-JUN-09 2KA2 0 JRNL AUTH E.S.SULISTIJO,K.R.MACKENZIE JRNL TITL STRUCTURAL BASIS FOR DIMERIZATION OF THE BNIP3 TRANSMEMBRANE JRNL TITL 2 DOMAIN JRNL REF BIOCHEMISTRY V. 48 5106 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19415897 JRNL DOI 10.1021/BI802245U REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 INFERRED INTERMONOMER HYDROGEN BOND RESTRAINTS BETWEEN HIS173- REMARK 3 SER172 ARE INCLUDED IN CALCULATION. INTERMONOMER HYDROGEN BOND REMARK 3 RESTRAINTS BETWEEN HIS173-SER172 ARE INCLUDED. THE CALCULATION OF REMARK 3 THIS STRUCTURE INCLUDES 2 ADDITIONAL HYDROGEN BOND REMARK 3 RESTRAINTS THAT WERE DERIVED FROM MUTAGENESIS DATA. REMARK 4 REMARK 4 2KA2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000100865. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 5.1 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-100% 13C; U-100% 15N] REMARK 210 BCL2/ADENOVIRUS E1B 19 KDA REMARK 210 PROTEIN-INTERACTING PROTEIN 3, REMARK 210 0.6 MM BCL2/ADENOVIRUS E1B 19 REMARK 210 KDA PROTEIN-INTERACTING PROTEIN REMARK 210 3, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D CN-NOESY-HSQC; 3D 15N-EDITED REMARK 210 NOESY-HSQC; 3D 13C-EDITED NOESY- REMARK 210 HSQC OPTIMIZED FOR AROMATIC REMARK 210 CARBON; HALF-FILTERED 3D CN- REMARK 210 NOESY-HSQC; 2D SPIN-ECHO REMARK 210 DIFFERENCE CT HSQC; HNHA; HNCA; REMARK 210 CBCACONNH; HNCO; H(C)CH-COSY; (H) REMARK 210 CCH-TOCSY; HBCBCGCDHD; REMARK 210 HBCBCGCDCEHE REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 1.2, NMRPIPE, SPARKY, VNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 158 -89.66 42.41 REMARK 500 1 PHE A 165 -44.98 -135.89 REMARK 500 1 LEU A 187 -85.39 -57.79 REMARK 500 1 SER B 158 -89.54 45.69 REMARK 500 1 LEU B 187 -82.83 -89.68 REMARK 500 2 PHE A 157 -70.34 -76.69 REMARK 500 2 SER A 158 -90.73 44.23 REMARK 500 2 LEU A 187 -81.58 -62.06 REMARK 500 2 SER B 158 -91.62 41.65 REMARK 500 2 ARG B 186 50.54 -100.97 REMARK 500 2 LEU B 187 -80.73 -91.03 REMARK 500 3 PHE A 157 -73.20 -76.25 REMARK 500 3 SER A 158 -88.87 47.62 REMARK 500 3 VAL A 164 30.98 -96.07 REMARK 500 3 PHE A 165 -44.57 -147.07 REMARK 500 3 LEU A 187 -80.88 -56.80 REMARK 500 3 SER B 158 -88.32 51.72 REMARK 500 3 PHE B 165 -47.06 -144.99 REMARK 500 3 ARG B 186 40.25 -94.17 REMARK 500 3 LEU B 187 -85.39 -101.08 REMARK 500 4 SER A 158 -87.58 42.84 REMARK 500 4 VAL A 164 42.81 -105.48 REMARK 500 4 PHE A 165 -51.75 -145.17 REMARK 500 4 LEU A 187 -83.10 -50.92 REMARK 500 4 SER B 158 -164.51 80.71 REMARK 500 4 PHE B 165 -65.84 -101.80 REMARK 500 4 ARG B 186 45.56 -109.20 REMARK 500 4 LEU B 187 -85.20 -137.84 REMARK 500 5 SER A 158 -77.55 69.08 REMARK 500 5 PHE A 165 -51.21 -144.25 REMARK 500 5 LEU A 187 -84.47 -55.25 REMARK 500 5 PHE B 157 -70.57 -77.73 REMARK 500 5 SER B 158 -90.04 40.08 REMARK 500 5 PHE B 165 -52.20 -128.40 REMARK 500 5 ARG B 186 58.11 -111.24 REMARK 500 5 LEU B 187 -83.17 -105.02 REMARK 500 6 SER A 158 -90.13 47.89 REMARK 500 6 PHE A 165 -61.27 -131.84 REMARK 500 6 LEU A 187 -83.44 -57.57 REMARK 500 6 SER B 158 -91.29 43.97 REMARK 500 6 ARG B 186 43.08 -93.55 REMARK 500 6 LEU B 187 -85.68 -138.03 REMARK 500 7 PHE A 157 -67.66 -159.50 REMARK 500 7 SER A 158 -90.83 40.19 REMARK 500 7 PHE A 165 -63.00 -133.06 REMARK 500 7 LEU A 187 -83.64 -99.92 REMARK 500 7 SER B 158 -87.53 54.20 REMARK 500 7 PHE B 165 -46.78 -142.81 REMARK 500 7 LEU B 187 -85.05 -91.77 REMARK 500 8 SER A 158 -91.36 41.16 REMARK 500 REMARK 500 THIS ENTRY HAS 140 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KA1 RELATED DB: PDB REMARK 900 RELATED ID: 16012 RELATED DB: BMRB DBREF 2KA2 A 154 188 UNP Q12983 BNIP3_HUMAN 154 188 DBREF 2KA2 B 154 188 UNP Q12983 BNIP3_HUMAN 154 188 SEQRES 1 A 35 GLY GLY ILE PHE SER ALA GLU PHE LEU LYS VAL PHE LEU SEQRES 2 A 35 PRO SER LEU LEU LEU SER HIS LEU LEU ALA ILE GLY LEU SEQRES 3 A 35 GLY ILE TYR ILE GLY ARG ARG LEU THR SEQRES 1 B 35 GLY GLY ILE PHE SER ALA GLU PHE LEU LYS VAL PHE LEU SEQRES 2 B 35 PRO SER LEU LEU LEU SER HIS LEU LEU ALA ILE GLY LEU SEQRES 3 B 35 GLY ILE TYR ILE GLY ARG ARG LEU THR HELIX 1 1 SER A 158 VAL A 164 1 7 HELIX 2 2 PHE A 165 THR A 188 1 24 HELIX 3 3 SER B 158 LYS B 163 1 6 HELIX 4 4 PHE B 165 ARG B 186 1 22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20