HEADER OXIDOREDUCTASE 03-OCT-06 2ILT TITLE HUMAN 11-BETA-HYDROXYSTEROID DEHYDROGENASE (HSD1) WITH NADP AND TITLE 2 ADAMANTANE SULFONE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CORTICOSTEROID 11-BETA-DEHYDROGENASE ISOZYME 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DEHYDROGENASE DOMAIN (RESIDUES 23-284); COMPND 5 SYNONYM: 11-DH, 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1, 11-BETA-HSD1; COMPND 6 EC: 1.1.1.146; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HSD11B1 KEYWDS HSD1, NADP, INHIBITOR, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.L.LONGENECKER,B.SORENSEN,R.JUDGE,W.QIN,J.T.LINK REVDAT 5 21-FEB-24 2ILT 1 REMARK SEQADV LINK REVDAT 4 18-OCT-17 2ILT 1 REMARK REVDAT 3 13-JUL-11 2ILT 1 VERSN REVDAT 2 24-FEB-09 2ILT 1 VERSN REVDAT 1 03-APR-07 2ILT 0 JRNL AUTH B.SORENSEN,M.WINN,J.ROHDE,Q.SHUAI,J.WANG,S.FUNG,K.MONZON, JRNL AUTH 2 W.CHIOU,D.STOLARIK,H.IMADE,L.PAN,X.DENG,L.CHOVAN, JRNL AUTH 3 K.LONGENECKER,R.JUDGE,W.QIN,M.BRUNE,H.CAMP,E.U.FREVERT, JRNL AUTH 4 P.JACOBSON,J.T.LINK JRNL TITL ADAMANTANE SULFONE AND SULFONAMIDE 11-BETA-HSD1 INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 17 527 2007 JRNL REFN ISSN 0960-894X JRNL PMID 17070044 JRNL DOI 10.1016/J.BMCL.2006.10.008 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 87.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14220 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 713 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 983 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.2270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2130 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 79 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.378 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.271 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.171 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.826 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2254 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3063 ; 1.313 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 274 ; 7.064 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;35.748 ;24.222 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 389 ;15.136 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;14.878 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 349 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1640 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1084 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1537 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 153 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 106 ; 0.186 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.286 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1413 ; 0.619 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2192 ; 1.044 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 961 ; 1.442 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 871 ; 2.239 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ILT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000039727. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14223 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 87.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 61.93550 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 61.93550 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 61.93550 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 61.93550 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 61.93550 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 61.93550 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 61.93550 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 61.93550 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 61.93550 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 61.93550 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 61.93550 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 61.93550 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 61.93550 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 61.93550 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 61.93550 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 61.93550 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 61.93550 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 61.93550 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 61.93550 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 61.93550 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 61.93550 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 61.93550 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 61.93550 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 61.93550 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 61.93550 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 61.93550 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 61.93550 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 61.93550 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 61.93550 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 61.93550 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 61.93550 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 61.93550 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 61.93550 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 61.93550 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 61.93550 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 61.93550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE MONOMER OF THE ASYMMETRIC UNIT CONSTITUTES HALF OF A REMARK 300 BIOLOGICALLY RELEVANT DIMER FORMED BY THE SYMMETRY OPERATOR 1-X, Y, REMARK 300 1-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 123.87100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 123.87100 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 79560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 123740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -517.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 123.87100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 123.87100 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 123.87100 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 123.87100 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 123.87100 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 123.87100 REMARK 350 BIOMT1 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 6 -1.000000 0.000000 0.000000 123.87100 REMARK 350 BIOMT3 6 0.000000 -1.000000 0.000000 123.87100 REMARK 350 BIOMT1 7 0.000000 0.000000 -1.000000 123.87100 REMARK 350 BIOMT2 7 -1.000000 0.000000 0.000000 123.87100 REMARK 350 BIOMT3 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 0.000000 -1.000000 123.87100 REMARK 350 BIOMT2 8 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 -1.000000 0.000000 123.87100 REMARK 350 BIOMT1 9 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 9 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 9 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 10 0.000000 -1.000000 0.000000 123.87100 REMARK 350 BIOMT2 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 10 -1.000000 0.000000 0.000000 123.87100 REMARK 350 BIOMT1 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 0.000000 -1.000000 123.87100 REMARK 350 BIOMT3 11 -1.000000 0.000000 0.000000 123.87100 REMARK 350 BIOMT1 12 0.000000 -1.000000 0.000000 123.87100 REMARK 350 BIOMT2 12 0.000000 0.000000 -1.000000 123.87100 REMARK 350 BIOMT3 12 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NI NI A 801 LIES ON A SPECIAL POSITION. REMARK 375 NI NI A 802 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 903 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 990 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 991 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1012 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1030 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 23 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 23 47.60 -96.11 REMARK 500 ASN A 24 -122.83 154.99 REMARK 500 ALA A 65 179.36 169.51 REMARK 500 ASP A 131 -9.01 67.37 REMARK 500 PHE A 144 -53.16 -121.97 REMARK 500 SER A 169 -147.92 -123.08 REMARK 500 LYS A 174 -32.86 -132.78 REMARK 500 MET A 179 -9.51 83.84 REMARK 500 ASN A 207 53.64 -92.41 REMARK 500 ASP A 219 37.52 -76.59 REMARK 500 HIS A 232 79.73 -116.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 22 PRO A 23 121.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 802 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 12 NE2 REMARK 620 2 HIS A 12 NE2 83.5 REMARK 620 3 HIS A 12 NE2 83.5 83.5 REMARK 620 4 HIS A 14 NE2 96.6 175.1 91.6 REMARK 620 5 HIS A 14 NE2 91.6 96.5 175.1 88.4 REMARK 620 6 HIS A 14 NE2 175.0 91.5 96.6 88.4 88.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 801 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HIS A 18 NE2 89.5 REMARK 620 3 HIS A 18 NE2 89.4 89.5 REMARK 620 4 HIS A 20 NE2 93.0 90.5 177.5 REMARK 620 5 HIS A 20 NE2 90.4 177.4 93.1 86.9 REMARK 620 6 HIS A 20 NE2 177.4 93.2 90.6 87.0 86.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NN1 A 902 DBREF 2ILT A 24 285 UNP P28845 DHI1_HUMAN 23 284 SEQADV 2ILT GLN A 11 UNP P28845 CLONING ARTIFACT SEQADV 2ILT HIS A 12 UNP P28845 CLONING ARTIFACT SEQADV 2ILT GLN A 13 UNP P28845 CLONING ARTIFACT SEQADV 2ILT HIS A 14 UNP P28845 CLONING ARTIFACT SEQADV 2ILT GLN A 15 UNP P28845 CLONING ARTIFACT SEQADV 2ILT HIS A 16 UNP P28845 CLONING ARTIFACT SEQADV 2ILT GLN A 17 UNP P28845 CLONING ARTIFACT SEQADV 2ILT HIS A 18 UNP P28845 CLONING ARTIFACT SEQADV 2ILT GLN A 19 UNP P28845 CLONING ARTIFACT SEQADV 2ILT HIS A 20 UNP P28845 CLONING ARTIFACT SEQADV 2ILT GLN A 21 UNP P28845 CLONING ARTIFACT SEQADV 2ILT GLN A 22 UNP P28845 CLONING ARTIFACT SEQADV 2ILT PRO A 23 UNP P28845 CLONING ARTIFACT SEQADV 2ILT SER A 272 UNP P28845 CYS 271 CONFLICT SEQRES 1 A 275 GLN HIS GLN HIS GLN HIS GLN HIS GLN HIS GLN GLN PRO SEQRES 2 A 275 ASN GLU GLU PHE ARG PRO GLU MET LEU GLN GLY LYS LYS SEQRES 3 A 275 VAL ILE VAL THR GLY ALA SER LYS GLY ILE GLY ARG GLU SEQRES 4 A 275 MET ALA TYR HIS LEU ALA LYS MET GLY ALA HIS VAL VAL SEQRES 5 A 275 VAL THR ALA ARG SER LYS GLU THR LEU GLN LYS VAL VAL SEQRES 6 A 275 SER HIS CYS LEU GLU LEU GLY ALA ALA SER ALA HIS TYR SEQRES 7 A 275 ILE ALA GLY THR MET GLU ASP MET THR PHE ALA GLU GLN SEQRES 8 A 275 PHE VAL ALA GLN ALA GLY LYS LEU MET GLY GLY LEU ASP SEQRES 9 A 275 MET LEU ILE LEU ASN HIS ILE THR ASN THR SER LEU ASN SEQRES 10 A 275 LEU PHE HIS ASP ASP ILE HIS HIS VAL ARG LYS SER MET SEQRES 11 A 275 GLU VAL ASN PHE LEU SER TYR VAL VAL LEU THR VAL ALA SEQRES 12 A 275 ALA LEU PRO MET LEU LYS GLN SER ASN GLY SER ILE VAL SEQRES 13 A 275 VAL VAL SER SER LEU ALA GLY LYS VAL ALA TYR PRO MET SEQRES 14 A 275 VAL ALA ALA TYR SER ALA SER LYS PHE ALA LEU ASP GLY SEQRES 15 A 275 PHE PHE SER SER ILE ARG LYS GLU TYR SER VAL SER ARG SEQRES 16 A 275 VAL ASN VAL SER ILE THR LEU CYS VAL LEU GLY LEU ILE SEQRES 17 A 275 ASP THR GLU THR ALA MET LYS ALA VAL SER GLY ILE VAL SEQRES 18 A 275 HIS MET GLN ALA ALA PRO LYS GLU GLU CYS ALA LEU GLU SEQRES 19 A 275 ILE ILE LYS GLY GLY ALA LEU ARG GLN GLU GLU VAL TYR SEQRES 20 A 275 TYR ASP SER SER LEU TRP THR THR LEU LEU ILE ARG ASN SEQRES 21 A 275 PRO SER ARG LYS ILE LEU GLU PHE LEU TYR SER THR SER SEQRES 22 A 275 TYR ASN HET NI A 801 1 HET NI A 802 1 HET NAP A 901 48 HET NN1 A 902 29 HETNAM NI NICKEL (II) ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM NN1 2-(2-CHLORO-4-FLUOROPHENOXY)-2-METHYL-N-[(1R,2S,3S,5S, HETNAM 2 NN1 7S)-5-(METHYLSULFONYL)-2-ADAMANTYL]PROPANAMIDE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 NI 2(NI 2+) FORMUL 4 NAP C21 H28 N7 O17 P3 FORMUL 5 NN1 C21 H27 CL F N O4 S FORMUL 6 HOH *173(H2 O) HELIX 1 1 ARG A 28 LEU A 32 5 5 HELIX 2 2 LYS A 44 MET A 57 1 14 HELIX 3 3 SER A 67 GLY A 82 1 16 HELIX 4 4 ASP A 95 GLY A 111 1 17 HELIX 5 5 ASP A 132 PHE A 144 1 13 HELIX 6 6 PHE A 144 ASN A 162 1 19 HELIX 7 7 SER A 170 LYS A 174 5 5 HELIX 8 8 VAL A 180 SER A 204 1 25 HELIX 9 9 THR A 220 SER A 228 1 9 HELIX 10 10 PRO A 237 LEU A 251 1 15 HELIX 11 11 SER A 261 ILE A 268 1 8 HELIX 12 12 ASN A 270 ASN A 285 1 16 SHEET 1 A 7 SER A 85 ALA A 90 0 SHEET 2 A 7 HIS A 60 ALA A 65 1 N VAL A 63 O HIS A 87 SHEET 3 A 7 LYS A 36 VAL A 39 1 N VAL A 37 O HIS A 60 SHEET 4 A 7 MET A 115 LEU A 118 1 O ILE A 117 N ILE A 38 SHEET 5 A 7 SER A 164 VAL A 168 1 O VAL A 166 N LEU A 116 SHEET 6 A 7 SER A 209 LEU A 215 1 O THR A 211 N VAL A 167 SHEET 7 A 7 GLU A 255 TYR A 258 1 O VAL A 256 N VAL A 214 LINK NE2 HIS A 12 NI B NI A 802 1555 1555 2.51 LINK NE2 HIS A 12 NI B NI A 802 6566 1555 2.51 LINK NE2 HIS A 12 NI B NI A 802 12665 1555 2.51 LINK NE2 HIS A 14 NI B NI A 802 1555 1555 2.33 LINK NE2 HIS A 14 NI B NI A 802 6566 1555 2.33 LINK NE2 HIS A 14 NI B NI A 802 12665 1555 2.33 LINK NE2 HIS A 18 NI A NI A 801 1555 1555 2.40 LINK NE2 HIS A 18 NI A NI A 801 6566 1555 2.40 LINK NE2 HIS A 18 NI A NI A 801 12665 1555 2.40 LINK NE2 HIS A 20 NI A NI A 801 1555 1555 2.28 LINK NE2 HIS A 20 NI A NI A 801 12665 1555 2.28 LINK NE2 HIS A 20 NI A NI A 801 6566 1555 2.28 SITE 1 AC1 2 HIS A 18 HIS A 20 SITE 1 AC2 2 HIS A 12 HIS A 14 SITE 1 AC3 32 GLY A 41 ALA A 42 SER A 43 LYS A 44 SITE 2 AC3 32 GLY A 45 ILE A 46 ALA A 65 ARG A 66 SITE 3 AC3 32 SER A 67 GLY A 91 THR A 92 MET A 93 SITE 4 AC3 32 ASN A 119 HIS A 120 ILE A 121 VAL A 168 SITE 5 AC3 32 SER A 169 TYR A 183 LYS A 187 LEU A 215 SITE 6 AC3 32 GLY A 216 LEU A 217 ILE A 218 THR A 220 SITE 7 AC3 32 THR A 222 ALA A 223 NN1 A 902 HOH A 925 SITE 8 AC3 32 HOH A 935 HOH A 947 HOH A 960 HOH A 997 SITE 1 AC4 12 ILE A 121 THR A 124 SER A 170 PRO A 178 SITE 2 AC4 12 TYR A 183 GLY A 216 LEU A 217 THR A 222 SITE 3 AC4 12 ALA A 223 ALA A 226 NAP A 901 HOH A1010 CRYST1 123.871 123.871 123.871 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008073 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008073 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008073 0.00000