HEADER TRANSCRIPTION 30-MAR-07 2EPV TITLE SOLUTION STRUCTURE OF THE 20TH C2H2 TYPE ZINC FINGER DOMAIN OF ZINC TITLE 2 FINGER PROTEIN 268 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN 268; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZINC FINGER DOMAIN; COMPND 5 SYNONYM: ZINC FINGER PROTEIN HZF3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZNF268; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P061218-20; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS C2H2, ZINC FINGER DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EPV 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2EPV 1 VERSN REVDAT 1 02-OCT-07 2EPV 0 JRNL AUTH W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE 20TH C2H2 TYPE ZINC FINGER DOMAIN JRNL TITL 2 OF ZINC FINGER PROTEIN 268 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EPV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000026960. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.82MM 13C-15N PROTEIN; 20MM D REMARK 210 -TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% H2O, REMARK 210 10% D2O ;0.05MM ZNCL2, 1MM IDA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20060702, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 798 42.42 -84.05 REMARK 500 1 CYS A 810 152.84 -37.95 REMARK 500 1 LYS A 815 174.41 -56.31 REMARK 500 1 GLU A 827 -36.12 -39.18 REMARK 500 1 THR A 829 -26.63 -38.39 REMARK 500 1 HIS A 830 43.50 -89.43 REMARK 500 1 PRO A 836 91.54 -69.78 REMARK 500 1 SER A 837 41.68 -90.69 REMARK 500 2 CYS A 810 151.80 -36.59 REMARK 500 2 ALA A 831 44.71 -85.16 REMARK 500 3 SER A 797 42.19 39.43 REMARK 500 3 CYS A 810 153.30 -44.84 REMARK 500 3 LYS A 815 173.83 -53.09 REMARK 500 3 THR A 829 -37.67 -39.16 REMARK 500 3 HIS A 830 40.42 -81.91 REMARK 500 4 SER A 803 41.53 -104.22 REMARK 500 4 CYS A 810 152.10 -39.02 REMARK 500 4 HIS A 830 35.10 -83.81 REMARK 500 4 ALA A 831 45.27 -108.59 REMARK 500 4 SER A 838 140.65 -35.04 REMARK 500 5 SER A 803 116.21 -35.71 REMARK 500 5 GLU A 809 107.78 -166.09 REMARK 500 5 CYS A 810 152.84 -35.42 REMARK 500 5 HIS A 830 39.49 -88.36 REMARK 500 5 PRO A 836 2.83 -69.75 REMARK 500 6 CYS A 810 159.06 -39.02 REMARK 500 6 SER A 834 41.45 -109.68 REMARK 500 7 SER A 798 95.25 -55.82 REMARK 500 7 GLU A 805 50.51 39.08 REMARK 500 7 CYS A 810 153.89 -41.90 REMARK 500 7 LYS A 815 175.81 -54.55 REMARK 500 7 HIS A 826 -60.23 -90.02 REMARK 500 7 THR A 829 -35.52 -39.07 REMARK 500 7 HIS A 830 47.23 -78.85 REMARK 500 7 PRO A 836 0.36 -69.79 REMARK 500 8 SER A 803 42.53 -92.74 REMARK 500 8 CYS A 810 156.45 -41.36 REMARK 500 8 LYS A 815 171.98 -50.21 REMARK 500 9 SER A 801 93.02 -69.99 REMARK 500 9 CYS A 810 156.37 -45.14 REMARK 500 9 LYS A 815 173.85 -55.63 REMARK 500 10 CYS A 810 151.95 -39.04 REMARK 500 10 LYS A 815 174.90 -57.44 REMARK 500 10 HIS A 826 -60.28 -92.42 REMARK 500 11 SER A 801 151.21 -36.59 REMARK 500 11 LYS A 815 176.20 -50.24 REMARK 500 11 GLU A 827 -35.64 -39.95 REMARK 500 11 HIS A 830 41.44 -81.57 REMARK 500 12 CYS A 810 153.34 -35.79 REMARK 500 12 LYS A 815 174.70 -53.78 REMARK 500 REMARK 500 THIS ENTRY HAS 87 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 810 SG REMARK 620 2 CYS A 813 SG 114.0 REMARK 620 3 HIS A 826 NE2 100.1 101.2 REMARK 620 4 HIS A 830 NE2 114.1 112.9 113.2 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO003011774.21 RELATED DB: TARGETDB DBREF 2EPV A 803 833 UNP Q14587 ZN268_HUMAN 803 833 SEQADV 2EPV GLY A 796 UNP Q14587 EXPRESSION TAG SEQADV 2EPV SER A 797 UNP Q14587 EXPRESSION TAG SEQADV 2EPV SER A 798 UNP Q14587 EXPRESSION TAG SEQADV 2EPV GLY A 799 UNP Q14587 EXPRESSION TAG SEQADV 2EPV SER A 800 UNP Q14587 EXPRESSION TAG SEQADV 2EPV SER A 801 UNP Q14587 EXPRESSION TAG SEQADV 2EPV GLY A 802 UNP Q14587 EXPRESSION TAG SEQADV 2EPV SER A 834 UNP Q14587 EXPRESSION TAG SEQADV 2EPV GLY A 835 UNP Q14587 EXPRESSION TAG SEQADV 2EPV PRO A 836 UNP Q14587 EXPRESSION TAG SEQADV 2EPV SER A 837 UNP Q14587 EXPRESSION TAG SEQADV 2EPV SER A 838 UNP Q14587 EXPRESSION TAG SEQADV 2EPV GLY A 839 UNP Q14587 EXPRESSION TAG SEQRES 1 A 44 GLY SER SER GLY SER SER GLY SER GLY GLU LYS PRO TYR SEQRES 2 A 44 GLU CYS ASN GLU CYS GLY LYS ALA PHE ILE TRP LYS SER SEQRES 3 A 44 LEU LEU ILE VAL HIS GLU ARG THR HIS ALA GLY VAL SER SEQRES 4 A 44 GLY PRO SER SER GLY HET ZN A 201 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 TRP A 819 ARG A 828 1 10 HELIX 2 2 THR A 829 ALA A 831 5 3 SHEET 1 A 2 TYR A 808 GLU A 809 0 SHEET 2 A 2 ALA A 816 PHE A 817 -1 O PHE A 817 N TYR A 808 LINK ZN ZN A 201 SG CYS A 810 1555 1555 2.35 LINK ZN ZN A 201 SG CYS A 813 1555 1555 2.22 LINK ZN ZN A 201 NE2 HIS A 826 1555 1555 2.08 LINK ZN ZN A 201 NE2 HIS A 830 1555 1555 2.06 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20