HEADER TRANSCRIPTION/DNA 18-MAY-05 1ZQ3 TITLE NMR SOLUTION STRUCTURE OF THE BICOID HOMEODOMAIN BOUND TO THE TITLE 2 CONSENSUS DNA BINDING SITE TAATCC COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*CP*TP*CP*TP*AP*AP*TP*CP*CP*CP*CP*G)-3'; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: CONSENSUS DNA BINDING SITE SENSE STRAND; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*CP*GP*GP*GP*GP*AP*TP*TP*AP*GP*AP*GP*C)-3'; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: CONSENSUS DNA BINDING SITE ANTI-SENSE STRAND; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: HOMEOTIC BICOID PROTEIN; COMPND 13 CHAIN: P; COMPND 14 FRAGMENT: HOMEODOMAIN (RESIDUES 97-163); COMPND 15 SYNONYM: PRD-4; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 7 ORGANISM_COMMON: FRUIT FLY; SOURCE 8 ORGANISM_TAXID: 7227; SOURCE 9 GENE: BCD; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21STAR; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET41A-NOVAGEN KEYWDS PROTEIN-DNA COMPLEX, DOUBLE HELIX, HELIX-TURN-HELIX, HOMEODOMAIN, KEYWDS 2 DNA-BINDING DOMAIN, K50, RECOGNITION HELIX, TRANSCRIPTION FACTOR, KEYWDS 3 TRANSLATIONAL CONTROL, TRANSCRIPTION-DNA COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.M.BAIRD-TITUS,M.RANCE,K.CLARK-BALDWIN,J.MA,D.VRUSHANK REVDAT 4 02-MAR-22 1ZQ3 1 REMARK SEQADV REVDAT 3 24-FEB-09 1ZQ3 1 VERSN REVDAT 2 21-MAR-06 1ZQ3 1 JRNL REVDAT 1 14-FEB-06 1ZQ3 0 JRNL AUTH J.M.BAIRD-TITUS,K.CLARK-BALDWIN,V.DAVE,C.A.CAPERELLI,J.MA, JRNL AUTH 2 M.RANCE JRNL TITL THE SOLUTION STRUCTURE OF THE NATIVE K50 BICOID HOMEODOMAIN JRNL TITL 2 BOUND TO THE CONSENSUS TAATCC DNA-BINDING SITE. JRNL REF J.MOL.BIOL. V. 356 1137 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16406070 JRNL DOI 10.1016/J.JMB.2005.12.007 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0, AMBER 7.0 REMARK 3 AUTHORS : PETER GUNTERT (CYANA), D.A. CASE, T.A. DARDEN, REMARK 3 T.E. CHEATHAM, III, C.L. SIMMERLING, J. WANG, R.E. REMARK 3 DUKE, R. LUO, K.M. MERZ, B. WANG, D.A. PEARLMAN, REMARK 3 M. CROWLEY, S. BROZELL, V. TSUI, H. GOHLKE, J. REMARK 3 MONGAN, V. HORNAK, G. CUI, P. BEROZA, C. REMARK 3 SCHAFMEISTER, J.W. CALDWELL, W.S. ROSS, AND P.A. REMARK 3 KOLLMAN. (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1724 TOTAL RESTRAINTS USED, 1076 REMARK 3 PROTEIN DISTANCE RESTRAINTS(NOESY), 34 PROTEIN HYDROGEN BOND REMARK 3 RESTRAINTS(3D NOESY ,I-I+4), 134 ANGLE RESTRAINTS(HNHA), 192 DNA REMARK 3 DISTANCE RESTRAINTS(2D NOESY), 55 WATSON-CRICK RESTRAINTS(B-DNA), REMARK 3 200 DNA ANGLE RESTRAINTS(B-DNA), 33 PROTEIN-DNA DISTANCE REMARK 3 RESTRAINTS (2D NOESY) REMARK 4 REMARK 4 1ZQ3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000033010. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1MM BICOID HOMEODOMAIN REMARK 210 (15N/13C), 1MM DUPLEX DNA REMARK 210 (UNLABELED), 10MM PHOSPHATE REMARK 210 BUFFER, PH 7.0, 1MM DTT, 1MM REMARK 210 PMSF, 1MM EDTA, 1MM SODIUM AZIDE, REMARK 210 0.3MM LEUPEPTIN, 0.2MM PEFABLOC REMARK 210 (ROCHE), 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; HNHA; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.109, NMRPIPE REMARK 210 METHOD USED : PROTEIN STRUCTURE - FAST TORSION REMARK 210 ANGLE DYNAMICS ALGORITHM REMARK 210 (CYANA2.0), DNA STRUCTURE - REMARK 210 NUCGEN AND SIMULATED ANNEALING REMARK 210 WITH NMR-DERIVED ENERGY REMARK 210 RESTRAINTS (AMBER7.0), PROTEIN- REMARK 210 DNA COMPLEX - SIMULATED REMARK 210 ANNEALING WITH NMR-DERIVED REMARK 210 ENERGY RESTRAINTS (AMBER7.0), REMARK 210 PROTEIN-DNA COMPLEX REFINEMENT - REMARK 210 EXPLICIT SOLVENT MD SIMULATIONS REMARK 210 (AMBER7.0) REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 3 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 DG A 69 C2' DG A 69 C1' 0.068 REMARK 500 1 DG A 69 N1 DG A 69 C2 -0.050 REMARK 500 1 DG A 69 C8 DG A 69 N9 -0.069 REMARK 500 1 DC A 70 C2' DC A 70 C1' 0.076 REMARK 500 1 DC A 70 O4' DC A 70 C1' -0.081 REMARK 500 1 DC A 70 C5 DC A 70 C6 0.054 REMARK 500 1 DT A 71 O3' DT A 71 C3' -0.055 REMARK 500 1 DT A 71 N1 DT A 71 C2 0.057 REMARK 500 1 DT A 71 C5 DT A 71 C6 0.068 REMARK 500 1 DC A 72 N1 DC A 72 C6 0.048 REMARK 500 1 DT A 73 C3' DT A 73 C2' -0.053 REMARK 500 1 DA A 74 C5 DA A 74 C6 0.074 REMARK 500 1 DA A 75 N3 DA A 75 C4 0.039 REMARK 500 1 DA A 75 C6 DA A 75 N6 -0.050 REMARK 500 1 DT A 76 C5' DT A 76 C4' 0.048 REMARK 500 1 DT A 76 O4' DT A 76 C4' -0.062 REMARK 500 1 DT A 76 C6 DT A 76 N1 -0.048 REMARK 500 1 DT A 76 O3' DC A 77 P -0.081 REMARK 500 1 DC A 78 O3' DC A 78 C3' -0.042 REMARK 500 1 DC A 78 C4 DC A 78 C5 0.050 REMARK 500 1 DC A 80 C5' DC A 80 C4' 0.054 REMARK 500 1 DC A 80 N3 DC A 80 C4 -0.057 REMARK 500 1 DG A 81 C8 DG A 81 N9 -0.042 REMARK 500 1 DC B 82 C5' DC B 82 C4' 0.053 REMARK 500 1 DG B 83 C5' DG B 83 C4' 0.079 REMARK 500 1 DG B 84 P DG B 84 O5' 0.080 REMARK 500 1 DG B 84 C5' DG B 84 C4' 0.058 REMARK 500 1 DG B 84 N3 DG B 84 C4 0.079 REMARK 500 1 DG B 84 C5 DG B 84 N7 0.060 REMARK 500 1 DG B 84 C2 DG B 84 N2 -0.080 REMARK 500 1 DG B 85 C3' DG B 85 C2' 0.092 REMARK 500 1 DG B 86 P DG B 86 O5' 0.074 REMARK 500 1 DG B 86 O4' DG B 86 C4' -0.081 REMARK 500 1 DA B 87 C1' DA B 87 N9 0.081 REMARK 500 1 DA B 87 N3 DA B 87 C4 0.063 REMARK 500 1 DA B 87 C6 DA B 87 N1 -0.046 REMARK 500 1 DA B 87 N9 DA B 87 C4 -0.043 REMARK 500 1 DT B 88 O4' DT B 88 C4' -0.068 REMARK 500 1 DT B 88 O3' DT B 88 C3' -0.062 REMARK 500 1 DT B 88 C5 DT B 88 C7 0.036 REMARK 500 1 DT B 89 P DT B 89 O5' 0.067 REMARK 500 1 DT B 89 C5 DT B 89 C6 0.044 REMARK 500 1 DA B 90 O4' DA B 90 C4' -0.070 REMARK 500 1 DG B 91 N1 DG B 91 C2 -0.052 REMARK 500 1 DG B 91 C5 DG B 91 N7 0.045 REMARK 500 1 DA B 92 C5' DA B 92 C4' 0.063 REMARK 500 1 DA B 92 N1 DA B 92 C2 -0.056 REMARK 500 1 DC B 94 P DC B 94 O5' 0.061 REMARK 500 1 DC B 94 C5' DC B 94 C4' 0.042 REMARK 500 1 DC B 94 C2' DC B 94 C1' 0.075 REMARK 500 REMARK 500 THIS ENTRY HAS 1081 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DG A 69 C5 - N7 - C8 ANGL. DEV. = -4.0 DEGREES REMARK 500 1 DG A 69 N7 - C8 - N9 ANGL. DEV. = 6.3 DEGREES REMARK 500 1 DG A 69 C8 - N9 - C4 ANGL. DEV. = -3.5 DEGREES REMARK 500 1 DC A 70 C1' - O4' - C4' ANGL. DEV. = 5.1 DEGREES REMARK 500 1 DC A 70 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 1 DC A 70 C6 - N1 - C2 ANGL. DEV. = -3.3 DEGREES REMARK 500 1 DC A 70 N1 - C2 - N3 ANGL. DEV. = 5.1 DEGREES REMARK 500 1 DC A 70 N3 - C2 - O2 ANGL. DEV. = -8.0 DEGREES REMARK 500 1 DT A 71 O4' - C1' - C2' ANGL. DEV. = -6.6 DEGREES REMARK 500 1 DT A 71 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 1 DT A 71 N3 - C2 - O2 ANGL. DEV. = -4.2 DEGREES REMARK 500 1 DT A 71 C6 - C5 - C7 ANGL. DEV. = -4.8 DEGREES REMARK 500 1 DC A 72 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 1 DC A 72 O4' - C1' - N1 ANGL. DEV. = 6.2 DEGREES REMARK 500 1 DC A 72 C6 - N1 - C2 ANGL. DEV. = -5.4 DEGREES REMARK 500 1 DC A 72 N3 - C2 - O2 ANGL. DEV. = -5.9 DEGREES REMARK 500 1 DT A 73 O4' - C1' - C2' ANGL. DEV. = -7.1 DEGREES REMARK 500 1 DT A 73 O4' - C1' - N1 ANGL. DEV. = 5.9 DEGREES REMARK 500 1 DT A 73 C4 - C5 - C7 ANGL. DEV. = 5.2 DEGREES REMARK 500 1 DT A 73 C6 - C5 - C7 ANGL. DEV. = -5.0 DEGREES REMARK 500 1 DA A 74 O4' - C1' - N9 ANGL. DEV. = -6.2 DEGREES REMARK 500 1 DA A 74 C6 - N1 - C2 ANGL. DEV. = -5.0 DEGREES REMARK 500 1 DA A 74 C4 - C5 - C6 ANGL. DEV. = -5.9 DEGREES REMARK 500 1 DA A 74 C5 - C6 - N1 ANGL. DEV. = 5.4 DEGREES REMARK 500 1 DA A 74 C4 - C5 - N7 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 DA A 74 C5 - N7 - C8 ANGL. DEV. = -5.6 DEGREES REMARK 500 1 DA A 74 N7 - C8 - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 1 DA A 74 C8 - N9 - C4 ANGL. DEV. = -4.0 DEGREES REMARK 500 1 DA A 74 N1 - C6 - N6 ANGL. DEV. = -5.2 DEGREES REMARK 500 1 DA A 75 O4' - C1' - N9 ANGL. DEV. = 5.4 DEGREES REMARK 500 1 DA A 75 C4 - C5 - C6 ANGL. DEV. = -6.1 DEGREES REMARK 500 1 DA A 75 C5 - C6 - N1 ANGL. DEV. = 6.3 DEGREES REMARK 500 1 DA A 75 C5 - N7 - C8 ANGL. DEV. = -3.1 DEGREES REMARK 500 1 DA A 75 N1 - C6 - N6 ANGL. DEV. = -7.6 DEGREES REMARK 500 1 DA A 75 C3' - O3' - P ANGL. DEV. = 8.2 DEGREES REMARK 500 1 DT A 76 O4' - C4' - C3' ANGL. DEV. = 3.9 DEGREES REMARK 500 1 DT A 76 C2 - N3 - C4 ANGL. DEV. = -4.8 DEGREES REMARK 500 1 DT A 76 N3 - C2 - O2 ANGL. DEV. = -3.8 DEGREES REMARK 500 1 DC A 77 O4' - C1' - N1 ANGL. DEV. = -4.2 DEGREES REMARK 500 1 DC A 77 C2 - N3 - C4 ANGL. DEV. = -5.7 DEGREES REMARK 500 1 DC A 77 N3 - C4 - C5 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 DC A 77 C5 - C6 - N1 ANGL. DEV. = -4.3 DEGREES REMARK 500 1 DC A 77 N1 - C2 - O2 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 DC A 77 N3 - C2 - O2 ANGL. DEV. = -7.5 DEGREES REMARK 500 1 DC A 77 N3 - C4 - N4 ANGL. DEV. = -5.5 DEGREES REMARK 500 1 DC A 78 C5' - C4' - C3' ANGL. DEV. = 8.9 DEGREES REMARK 500 1 DC A 78 N3 - C4 - C5 ANGL. DEV. = 2.5 DEGREES REMARK 500 1 DC A 79 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 1 DC A 79 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 DC A 79 C2 - N3 - C4 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 3014 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG P 3 70.09 -164.50 REMARK 500 1 ARG P 6 9.67 -63.80 REMARK 500 1 GLN P 63 -2.56 -58.43 REMARK 500 2 THR P 7 121.69 -26.74 REMARK 500 2 GLN P 67 -51.31 -160.04 REMARK 500 3 ARG P 4 -17.03 -155.95 REMARK 500 3 ARG P 6 -23.05 -142.45 REMARK 500 3 ALA P 40 74.26 59.81 REMARK 500 3 HIS P 64 -2.67 -143.84 REMARK 500 4 ARG P 25 -7.13 -58.52 REMARK 500 4 ALA P 40 60.37 66.40 REMARK 500 5 ARG P 4 -18.33 -47.46 REMARK 500 5 ARG P 6 -15.53 62.23 REMARK 500 5 THR P 8 19.45 -145.01 REMARK 500 5 PHE P 9 174.85 57.33 REMARK 500 5 ALA P 40 51.04 78.58 REMARK 500 6 THR P 5 -157.54 -154.47 REMARK 500 6 THR P 7 146.68 101.10 REMARK 500 6 LYS P 65 -179.74 64.80 REMARK 500 8 ARG P 6 172.06 51.06 REMARK 500 8 THR P 7 161.70 -44.91 REMARK 500 8 HIS P 64 -2.39 54.50 REMARK 500 8 GLN P 67 -40.92 -159.35 REMARK 500 9 ASP P 66 -17.38 -158.46 REMARK 500 10 ARG P 3 53.98 -116.39 REMARK 500 10 THR P 5 -178.61 -69.46 REMARK 500 10 ARG P 6 56.61 -146.07 REMARK 500 10 HIS P 64 -14.78 -36.10 REMARK 500 11 TYR P 26 35.07 -144.66 REMARK 500 11 LEU P 27 162.78 60.23 REMARK 500 11 ALA P 40 35.12 76.86 REMARK 500 11 HIS P 64 -26.54 -158.62 REMARK 500 11 LYS P 65 172.08 57.57 REMARK 500 11 ASP P 66 50.95 39.60 REMARK 500 12 ARG P 3 -31.03 -137.97 REMARK 500 12 LEU P 27 164.22 53.97 REMARK 500 12 ALA P 40 46.54 70.19 REMARK 500 12 HIS P 64 8.76 -152.07 REMARK 500 12 ASP P 66 32.10 -158.61 REMARK 500 12 GLN P 67 4.68 -159.67 REMARK 500 13 ARG P 4 3.65 -150.91 REMARK 500 13 PHE P 9 178.37 -57.18 REMARK 500 13 ALA P 40 68.83 64.22 REMARK 500 13 GLN P 63 13.74 -67.43 REMARK 500 14 ARG P 6 -71.77 42.60 REMARK 500 14 THR P 7 111.00 28.17 REMARK 500 14 GLN P 63 -10.06 -146.68 REMARK 500 15 ARG P 4 170.28 -55.27 REMARK 500 16 THR P 5 164.00 -44.66 REMARK 500 16 ALA P 40 70.04 64.19 REMARK 500 REMARK 500 THIS ENTRY HAS 65 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 DG A 69 0.07 SIDE CHAIN REMARK 500 1 DA A 74 0.07 SIDE CHAIN REMARK 500 1 DA A 75 0.09 SIDE CHAIN REMARK 500 1 DT A 76 0.13 SIDE CHAIN REMARK 500 1 DC A 78 0.09 SIDE CHAIN REMARK 500 1 DG A 81 0.09 SIDE CHAIN REMARK 500 1 DC B 82 0.08 SIDE CHAIN REMARK 500 1 DG B 85 0.08 SIDE CHAIN REMARK 500 1 DT B 88 0.10 SIDE CHAIN REMARK 500 1 DT B 89 0.10 SIDE CHAIN REMARK 500 1 DG B 91 0.08 SIDE CHAIN REMARK 500 1 DG B 93 0.10 SIDE CHAIN REMARK 500 1 ARG P 54 0.17 SIDE CHAIN REMARK 500 1 ARG P 56 0.09 SIDE CHAIN REMARK 500 2 DG A 69 0.07 SIDE CHAIN REMARK 500 2 DT A 71 0.11 SIDE CHAIN REMARK 500 2 DA A 75 0.10 SIDE CHAIN REMARK 500 2 DT A 76 0.12 SIDE CHAIN REMARK 500 2 DC A 77 0.08 SIDE CHAIN REMARK 500 2 DC A 78 0.10 SIDE CHAIN REMARK 500 2 DG A 81 0.07 SIDE CHAIN REMARK 500 2 DG B 83 0.06 SIDE CHAIN REMARK 500 2 DG B 84 0.09 SIDE CHAIN REMARK 500 2 DG B 86 0.08 SIDE CHAIN REMARK 500 2 DA B 87 0.06 SIDE CHAIN REMARK 500 2 DG B 91 0.09 SIDE CHAIN REMARK 500 2 DG B 93 0.07 SIDE CHAIN REMARK 500 2 ARG P 4 0.10 SIDE CHAIN REMARK 500 2 ARG P 6 0.10 SIDE CHAIN REMARK 500 2 HIS P 20 0.09 SIDE CHAIN REMARK 500 2 TYR P 26 0.07 SIDE CHAIN REMARK 500 3 DC A 70 0.06 SIDE CHAIN REMARK 500 3 DC A 72 0.12 SIDE CHAIN REMARK 500 3 DA A 74 0.06 SIDE CHAIN REMARK 500 3 DA A 75 0.08 SIDE CHAIN REMARK 500 3 DT A 76 0.12 SIDE CHAIN REMARK 500 3 DG A 81 0.10 SIDE CHAIN REMARK 500 3 DC B 82 0.15 SIDE CHAIN REMARK 500 3 DG B 86 0.07 SIDE CHAIN REMARK 500 3 DT B 88 0.06 SIDE CHAIN REMARK 500 3 DA B 90 0.07 SIDE CHAIN REMARK 500 3 DG B 91 0.07 SIDE CHAIN REMARK 500 3 DA B 92 0.11 SIDE CHAIN REMARK 500 3 DG B 93 0.11 SIDE CHAIN REMARK 500 3 ARG P 6 0.08 SIDE CHAIN REMARK 500 3 ARG P 54 0.09 SIDE CHAIN REMARK 500 4 DG A 69 0.08 SIDE CHAIN REMARK 500 4 DC A 70 0.08 SIDE CHAIN REMARK 500 4 DC A 72 0.07 SIDE CHAIN REMARK 500 4 DA A 75 0.10 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 321 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1 GLY P 42 -11.33 REMARK 500 4 HIS P 20 -10.33 REMARK 500 4 VAL P 46 -10.88 REMARK 500 9 ARG P 55 -10.13 REMARK 500 11 THR P 7 -10.07 REMARK 500 12 ARG P 3 12.28 REMARK 500 13 PHE P 9 -10.62 REMARK 500 13 SER P 11 -10.41 REMARK 500 15 ILE P 14 -12.41 REMARK 500 16 LYS P 38 -10.90 REMARK 500 16 GLN P 60 -10.11 REMARK 500 REMARK 500 REMARK: NULL DBREF 1ZQ3 P 2 68 UNP Q9UAM0 BCD_DROME 97 163 DBREF 1ZQ3 A 69 81 PDB 1ZQ3 1ZQ3 69 81 DBREF 1ZQ3 B 82 94 PDB 1ZQ3 1ZQ3 82 94 SEQADV 1ZQ3 GLY P 1 UNP Q9UAM0 CLONING ARTIFACT SEQRES 1 A 13 DG DC DT DC DT DA DA DT DC DC DC DC DG SEQRES 1 B 13 DC DG DG DG DG DA DT DT DA DG DA DG DC SEQRES 1 P 68 GLY PRO ARG ARG THR ARG THR THR PHE THR SER SER GLN SEQRES 2 P 68 ILE ALA GLU LEU GLU GLN HIS PHE LEU GLN GLY ARG TYR SEQRES 3 P 68 LEU THR ALA PRO ARG LEU ALA ASP LEU SER ALA LYS LEU SEQRES 4 P 68 ALA LEU GLY THR ALA GLN VAL LYS ILE TRP PHE LYS ASN SEQRES 5 P 68 ARG ARG ARG ARG HIS LYS ILE GLN SER ASP GLN HIS LYS SEQRES 6 P 68 ASP GLN SER HELIX 1 1 THR P 10 LEU P 22 1 13 HELIX 2 2 THR P 28 ALA P 40 1 13 HELIX 3 3 GLY P 42 GLN P 63 1 22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20