HEADER TRANSCRIPTION/REPLICATION 25-APR-05 1ZHI TITLE COMPLEX OF THE S. CEREVISIAE ORC1 AND SIR1 INTERACTING DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORIGIN RECOGNITION COMPLEX SUBUNIT 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BAH DOMAIN OF ORC1; COMPND 5 SYNONYM: ORIGIN RECOGNITION COMPLEX PROTEIN 120 KDA SUBUNIT; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: REGULATORY PROTEIN SIR1; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: OIR* DOMAIN OF SIR1; COMPND 11 SYNONYM: SILENT INFORMATION REGULATOR 1; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: ORC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 4932; SOURCE 15 GENE: SIR1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS PROTEIN COMPLEX, BAH DOMAIN, OIR DOMAIN, TRANSCRIPTION-REPLICATION KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.HOU,D.A.BERNSTEIN,C.A.FOX,J.L.KECK REVDAT 4 20-OCT-21 1ZHI 1 SEQADV REVDAT 3 13-JUL-11 1ZHI 1 VERSN REVDAT 2 24-FEB-09 1ZHI 1 VERSN REVDAT 1 07-JUN-05 1ZHI 0 JRNL AUTH Z.HOU,D.A.BERNSTEIN,C.A.FOX,J.L.KECK JRNL TITL STRUCTURAL BASIS OF THE SIR1-ORIGIN RECOGNITION COMPLEX JRNL TITL 2 INTERACTION IN TRANSCRIPTIONAL SILENCING. JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 8489 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 15932939 JRNL DOI 10.1073/PNAS.0503525102 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 13146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 696 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 913 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2633 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : 0.18000 REMARK 3 B33 (A**2) : -0.26000 REMARK 3 B12 (A**2) : 0.09000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.683 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.367 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.266 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.766 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.867 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2691 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3645 ; 1.020 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 317 ; 7.470 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 401 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2037 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1083 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 115 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.288 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.190 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1600 ; 0.583 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2597 ; 1.097 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1091 ; 1.360 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1048 ; 2.308 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 214 REMARK 3 ORIGIN FOR THE GROUP (A): -16.6938 45.4090 115.2004 REMARK 3 T TENSOR REMARK 3 T11: 0.2959 T22: 0.0953 REMARK 3 T33: 0.1008 T12: -0.0776 REMARK 3 T13: -0.0222 T23: -0.0804 REMARK 3 L TENSOR REMARK 3 L11: 4.5527 L22: 4.6589 REMARK 3 L33: 3.2156 L12: 0.5728 REMARK 3 L13: -2.0893 L23: -0.5041 REMARK 3 S TENSOR REMARK 3 S11: 0.2629 S12: -0.2568 S13: 0.6490 REMARK 3 S21: 0.7224 S22: -0.2007 S23: 0.2612 REMARK 3 S31: -0.5468 S32: 0.0655 S33: -0.0622 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 487 B 611 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4909 22.8791 105.2115 REMARK 3 T TENSOR REMARK 3 T11: 0.1535 T22: 0.2510 REMARK 3 T33: 0.2656 T12: -0.0761 REMARK 3 T13: -0.0950 T23: 0.1061 REMARK 3 L TENSOR REMARK 3 L11: 6.4652 L22: 5.0823 REMARK 3 L33: 4.1304 L12: -4.8262 REMARK 3 L13: 4.0773 L23: -3.5360 REMARK 3 S TENSOR REMARK 3 S11: 0.3599 S12: 0.1683 S13: -0.2149 REMARK 3 S21: -0.0971 S22: -0.3144 S23: -0.2213 REMARK 3 S31: 0.2212 S32: 0.1900 S33: -0.0455 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 66 REMARK 3 ORIGIN FOR THE GROUP (A): -7.5482 35.5423 107.1004 REMARK 3 T TENSOR REMARK 3 T11: 0.1423 T22: 0.1242 REMARK 3 T33: 0.0485 T12: -0.0931 REMARK 3 T13: -0.0319 T23: 0.0538 REMARK 3 L TENSOR REMARK 3 L11: 2.0093 L22: 0.8753 REMARK 3 L33: 0.8854 L12: 0.3887 REMARK 3 L13: 0.4922 L23: -0.4252 REMARK 3 S TENSOR REMARK 3 S11: 0.0988 S12: 0.0228 S13: 0.1966 REMARK 3 S21: 0.2329 S22: -0.0906 S23: -0.1859 REMARK 3 S31: -0.0421 S32: 0.1015 S33: -0.0082 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZHI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000032729. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14005 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 62.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, NACL, AMMONIUM SULFATE, PH 7.5, REMARK 280 TEMPERATURE 298K, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.63000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 207.26000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 155.44500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 259.07500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.81500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 103.63000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 207.26000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 259.07500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 155.44500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 51.81500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 THR A 4 REMARK 465 LEU A 5 REMARK 465 LYS A 6 REMARK 465 ASP A 7 REMARK 465 LEU A 8 REMARK 465 GLN A 9 REMARK 465 GLN A 27 REMARK 465 LYS A 28 REMARK 465 ARG A 29 REMARK 465 LEU A 30 REMARK 465 ARG A 31 REMARK 465 ARG A 32 REMARK 465 ARG A 33 REMARK 465 GLY A 34 REMARK 465 ALA A 35 REMARK 465 LYS A 36 REMARK 465 SER A 215 REMARK 465 LYS A 216 REMARK 465 LYS A 217 REMARK 465 LYS A 218 REMARK 465 GLU A 219 REMARK 465 GLY B 474 REMARK 465 SER B 475 REMARK 465 HIS B 476 REMARK 465 MET B 477 REMARK 465 ALA B 478 REMARK 465 SER B 479 REMARK 465 GLU B 480 REMARK 465 LYS B 481 REMARK 465 LYS B 482 REMARK 465 PHE B 483 REMARK 465 SER B 484 REMARK 465 THR B 485 REMARK 465 GLU B 486 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 61 NH1 ARG B 516 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 166 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 191 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 17 -144.33 -71.58 REMARK 500 GLN A 19 -88.63 138.10 REMARK 500 ASN A 80 -36.18 -140.17 REMARK 500 ASN A 113 12.78 -159.36 REMARK 500 LYS A 162 -73.89 -8.24 REMARK 500 ASN A 164 43.01 -154.56 REMARK 500 LYS A 183 79.71 60.65 REMARK 500 LYS A 198 -62.73 -104.12 REMARK 500 ASN B 533 83.35 64.82 REMARK 500 ALA B 551 71.46 -151.66 REMARK 500 PHE B 571 4.61 80.94 REMARK 500 THR B 578 45.74 -77.60 REMARK 500 GLU B 579 166.38 168.05 REMARK 500 LEU B 582 -31.40 76.13 REMARK 500 TYR B 584 109.84 -52.70 REMARK 500 ASP B 601 -52.50 -15.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Z1A RELATED DB: PDB REMARK 900 ORC1-INTERACTING DOMAIN OF SIR1 REMARK 900 RELATED ID: 1M4Z RELATED DB: PDB REMARK 900 BAH DOMAIN OF ORC1P DBREF 1ZHI A 1 219 UNP P54784 ORC1_YEAST 1 219 DBREF 1ZHI B 480 611 UNP P21691 SIR1_YEAST 480 611 SEQADV 1ZHI GLY A -5 UNP P54784 CLONING ARTIFACT SEQADV 1ZHI SER A -4 UNP P54784 CLONING ARTIFACT SEQADV 1ZHI HIS A -3 UNP P54784 CLONING ARTIFACT SEQADV 1ZHI MET A -2 UNP P54784 CLONING ARTIFACT SEQADV 1ZHI ALA A -1 UNP P54784 CLONING ARTIFACT SEQADV 1ZHI SER A 0 UNP P54784 CLONING ARTIFACT SEQADV 1ZHI GLY B 474 UNP P21691 CLONING ARTIFACT SEQADV 1ZHI SER B 475 UNP P21691 CLONING ARTIFACT SEQADV 1ZHI HIS B 476 UNP P21691 CLONING ARTIFACT SEQADV 1ZHI MET B 477 UNP P21691 CLONING ARTIFACT SEQADV 1ZHI ALA B 478 UNP P21691 CLONING ARTIFACT SEQADV 1ZHI SER B 479 UNP P21691 CLONING ARTIFACT SEQADV 1ZHI ALA B 593 UNP P21691 CYS 593 ENGINEERED MUTATION SEQRES 1 A 225 GLY SER HIS MET ALA SER MET ALA LYS THR LEU LYS ASP SEQRES 2 A 225 LEU GLN GLY TRP GLU ILE ILE THR THR ASP GLU GLN GLY SEQRES 3 A 225 ASN ILE ILE ASP GLY GLY GLN LYS ARG LEU ARG ARG ARG SEQRES 4 A 225 GLY ALA LYS THR GLU HIS TYR LEU LYS ARG SER SER ASP SEQRES 5 A 225 GLY ILE LYS LEU GLY ARG GLY ASP SER VAL VAL MET HIS SEQRES 6 A 225 ASN GLU ALA ALA GLY THR TYR SER VAL TYR MET ILE GLN SEQRES 7 A 225 GLU LEU ARG LEU ASN THR LEU ASN ASN VAL VAL GLU LEU SEQRES 8 A 225 TRP ALA LEU THR TYR LEU ARG TRP PHE GLU VAL ASN PRO SEQRES 9 A 225 LEU ALA HIS TYR ARG GLN PHE ASN PRO ASP ALA ASN ILE SEQRES 10 A 225 LEU ASN ARG PRO LEU ASN TYR TYR ASN LYS LEU PHE SER SEQRES 11 A 225 GLU THR ALA ASN LYS ASN GLU LEU TYR LEU THR ALA GLU SEQRES 12 A 225 LEU ALA GLU LEU GLN LEU PHE ASN PHE ILE ARG VAL ALA SEQRES 13 A 225 ASN VAL MET ASP GLY SER LYS TRP GLU VAL LEU LYS GLY SEQRES 14 A 225 ASN VAL ASP PRO GLU ARG ASP PHE THR VAL ARG TYR ILE SEQRES 15 A 225 CYS GLU PRO THR GLY GLU LYS PHE VAL ASP ILE ASN ILE SEQRES 16 A 225 GLU ASP VAL LYS ALA TYR ILE LYS LYS VAL GLU PRO ARG SEQRES 17 A 225 GLU ALA GLN GLU TYR LEU LYS ASP LEU THR LEU PRO SER SEQRES 18 A 225 LYS LYS LYS GLU SEQRES 1 B 138 GLY SER HIS MET ALA SER GLU LYS LYS PHE SER THR GLU SEQRES 2 B 138 GLU GLU TYR VAL SER PRO ARG PHE LEU VAL ALA ASP GLY SEQRES 3 B 138 PHE LEU ILE ASP LEU ALA GLU GLU LYS PRO ILE ASN PRO SEQRES 4 B 138 LYS ASP PRO ARG LEU LEU THR LEU LEU LYS ASP HIS GLN SEQRES 5 B 138 ARG ALA MET ILE ASP GLN MET ASN LEU VAL LYS TRP ASN SEQRES 6 B 138 ASP PHE LYS LYS TYR GLN ASP PRO ILE PRO LEU LYS ALA SEQRES 7 B 138 LYS THR LEU PHE LYS PHE CYS LYS GLN ILE LYS LYS LYS SEQRES 8 B 138 PHE LEU ARG GLY ALA ASP PHE LYS LEU HIS THR LEU PRO SEQRES 9 B 138 THR GLU ALA ASN LEU LYS TYR GLU PRO GLU ARG MET THR SEQRES 10 B 138 VAL LEU ALA SER CYS VAL PRO ILE LEU LEU ASP ASP GLN SEQRES 11 B 138 THR VAL GLN TYR LEU TYR ASP ASP FORMUL 3 HOH *66(H2 O) HELIX 1 1 ARG A 92 VAL A 96 5 5 HELIX 2 2 ASN A 97 ASN A 106 1 10 HELIX 3 3 PRO A 107 ASN A 110 5 4 HELIX 4 4 PRO A 115 ALA A 127 1 13 HELIX 5 5 GLN A 142 PHE A 144 5 3 HELIX 6 6 GLY A 155 LYS A 162 1 8 HELIX 7 7 GLY A 163 VAL A 165 5 3 HELIX 8 8 ASN A 188 LYS A 197 1 10 HELIX 9 9 GLU A 200 LEU A 211 1 12 HELIX 10 10 ARG B 516 LEU B 521 1 6 HELIX 11 11 LYS B 522 GLN B 531 1 10 HELIX 12 12 LYS B 536 LYS B 541 5 6 HELIX 13 13 ALA B 551 CYS B 558 1 8 SHEET 1 A 3 TRP A 11 THR A 16 0 SHEET 2 A 3 GLU A 38 ARG A 43 -1 O LYS A 42 N GLU A 12 SHEET 3 A 3 LYS A 49 LEU A 50 -1 O LEU A 50 N LEU A 41 SHEET 1 B 8 VAL A 185 ASP A 186 0 SHEET 2 B 8 ASP A 170 ILE A 176 -1 N ILE A 176 O VAL A 185 SHEET 3 B 8 PHE A 146 ASP A 154 1 N ASN A 151 O PHE A 171 SHEET 4 B 8 SER A 55 ASN A 60 -1 N SER A 55 O ALA A 150 SHEET 5 B 8 THR A 65 LEU A 76 -1 O SER A 67 N MET A 58 SHEET 6 B 8 VAL A 83 LEU A 91 -1 O LEU A 88 N MET A 70 SHEET 7 B 8 GLU A 131 LEU A 141 -1 O TYR A 133 N LEU A 91 SHEET 8 B 8 ASP A 170 ILE A 176 1 O THR A 172 N LEU A 132 SHEET 1 C 4 GLU B 488 TYR B 489 0 SHEET 2 C 4 PHE B 494 ALA B 497 -1 O VAL B 496 N GLU B 488 SHEET 3 C 4 PHE B 500 ASP B 503 -1 O ILE B 502 N LEU B 495 SHEET 4 C 4 LYS B 508 ILE B 510 -1 O ILE B 510 N LEU B 501 SHEET 1 D 5 ILE B 547 PRO B 548 0 SHEET 2 D 5 VAL B 605 TYR B 609 1 O TYR B 607 N ILE B 547 SHEET 3 D 5 MET B 589 LEU B 599 -1 N VAL B 596 O LEU B 608 SHEET 4 D 5 ILE B 561 ARG B 567 -1 N ARG B 567 O MET B 589 SHEET 5 D 5 LEU B 573 HIS B 574 -1 O HIS B 574 N LEU B 566 CRYST1 72.151 72.151 310.890 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013860 0.008002 0.000000 0.00000 SCALE2 0.000000 0.016004 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003217 0.00000