HEADER CELL CYCLE, HYDROLASE 19-OCT-04 1XSF TITLE SOLUTION STRUCTURE OF A RESUSCITATION PROMOTING FACTOR DOMAIN FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE RESUSCITATION-PROMOTING FACTOR RPFB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RPFBC DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: RV1009; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS LYSOZYME-LIKE STRUCTURE, CELL CYCLE, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR M.COHEN-GONSAUD,P.BARTHE,B.HENDERSON,J.WARD,C.ROUMESTAND,N.H.KEEP REVDAT 5 02-MAR-22 1XSF 1 REMARK REVDAT 4 24-FEB-09 1XSF 1 VERSN REVDAT 3 22-MAR-05 1XSF 1 JRNL REVDAT 2 01-MAR-05 1XSF 1 JRNL REVDAT 1 15-FEB-05 1XSF 0 JRNL AUTH M.COHEN-GONSAUD,P.BARTHE,C.BAGNERIS,B.HENDERSON,J.WARD, JRNL AUTH 2 C.ROUMESTAND,N.H.KEEP JRNL TITL THE STRUCTURE OF A RESUSCITATION-PROMOTING FACTOR DOMAIN JRNL TITL 2 FROM MYCOBACTERIUM TUBERCULOSIS SHOWS HOMOLOGY TO LYSOZYMES JRNL REF NAT.STRUCT.MOL.BIOL. V. 12 270 2005 JRNL REFN ISSN 1545-9993 JRNL PMID 15723078 JRNL DOI 10.1038/NSMB905 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.COHEN-GONSAUD,P.BARTHE,F.POMMIER,R.HARRIS,P.C.DRISCOLL, REMARK 1 AUTH 2 N.H.KEEP,C.ROUMESTAND REMARK 1 TITL LETTER TO THE EDITOR: (1)H, (15)N, AND (13)C CHEMICAL SHIFT REMARK 1 TITL 2 ASSIGNMENTS OF THE RESUSCITATION PROMOTING FACTOR DOMAIN OF REMARK 1 TITL 3 RV1009 FROM MYCOBACTERIUM TUBERCULOSIS REMARK 1 REF J.BIOMOL.NMR V. 30 373 2004 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 15614636 REMARK 1 DOI 10.1007/S10858-004-3466-X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : GIFA 4.4, CNS 1.1 REMARK 3 AUTHORS : PONS (GIFA), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 1757 RESTRAINTS, 1613 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 124 REMARK 3 DIHEDRAL ANGLE RESTRAINTS, 20 DISTANCE RESTRAINTS FROM HYDROGEN REMARK 3 BONDS. REMARK 4 REMARK 4 1XSF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000030714. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 4.6 REMARK 210 IONIC STRENGTH : 25MM NA-ACETATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM RPFBC DOMAIN U-15N; 25MM REMARK 210 NA-ACETATE; 2MM BETA- REMARK 210 MERCAPTOETHANOL; 90% H2O, 10% REMARK 210 D2O; 0.5MM RPFBC DOMAIN U-15N, REMARK 210 13C; 25MM NA-ACETATE; 2MM BETA- REMARK 210 MERCAPTOETHANOL; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED TOCSY; HNCA; HN(CO)CA; REMARK 210 CBCA(CO)NH; HNCO REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5.0.4, TALOS 3, ARIA 1.2 REMARK 210 METHOD USED : MOLECULAR DYNAMICS IN EXPLICIT REMARK 210 SOLVENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB2 ASP A 32 HH21 ARG A 79 1.32 REMARK 500 HG21 ILE A 45 HA2 GLY A 53 1.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 11 -71.72 -66.92 REMARK 500 1 VAL A 12 77.79 25.73 REMARK 500 1 THR A 16 -46.48 -147.87 REMARK 500 1 ALA A 71 125.22 165.33 REMARK 500 1 PRO A 72 -5.97 -53.71 REMARK 500 1 PRO A 99 -139.39 -64.73 REMARK 500 2 ALA A 7 -165.15 -124.46 REMARK 500 2 HIS A 8 -9.81 75.92 REMARK 500 2 VAL A 12 84.58 27.97 REMARK 500 2 ALA A 71 125.48 163.26 REMARK 500 2 PRO A 72 -4.00 -55.16 REMARK 500 2 PRO A 99 -94.20 -70.99 REMARK 500 3 VAL A 12 84.33 21.52 REMARK 500 3 THR A 16 -21.99 63.98 REMARK 500 3 LYS A 17 74.94 -114.05 REMARK 500 3 GLU A 21 87.94 47.01 REMARK 500 3 ALA A 71 128.92 162.67 REMARK 500 3 PRO A 72 -4.93 -57.35 REMARK 500 3 PRO A 99 -88.38 -73.95 REMARK 500 4 VAL A 11 -73.26 -99.90 REMARK 500 4 VAL A 12 75.32 21.34 REMARK 500 4 ASN A 46 103.72 -171.24 REMARK 500 4 ALA A 71 126.96 169.10 REMARK 500 4 PRO A 72 -5.90 -56.85 REMARK 500 4 PRO A 99 -138.89 -62.97 REMARK 500 5 PRO A 6 111.42 -39.18 REMARK 500 5 ALA A 10 54.19 -109.66 REMARK 500 5 VAL A 11 -67.04 -124.09 REMARK 500 5 VAL A 12 81.19 26.18 REMARK 500 5 LYS A 17 77.10 32.77 REMARK 500 5 PRO A 18 118.14 -34.10 REMARK 500 5 ALA A 71 128.73 161.57 REMARK 500 5 PRO A 72 -6.68 -54.90 REMARK 500 5 PRO A 99 -131.30 -63.08 REMARK 500 6 HIS A 8 -0.23 69.58 REMARK 500 6 VAL A 12 80.55 25.91 REMARK 500 6 LYS A 17 72.61 37.69 REMARK 500 6 ALA A 71 130.27 161.81 REMARK 500 6 PRO A 72 -2.13 -58.33 REMARK 500 6 TRP A 95 24.39 -141.17 REMARK 500 6 PRO A 99 -110.10 -67.34 REMARK 500 7 ALA A 7 24.80 -77.36 REMARK 500 7 VAL A 12 105.11 54.69 REMARK 500 7 GLU A 21 84.64 46.65 REMARK 500 7 ALA A 71 127.14 166.32 REMARK 500 7 PRO A 72 -7.18 -55.91 REMARK 500 7 PRO A 99 -88.54 -74.77 REMARK 500 8 VAL A 3 108.01 -59.29 REMARK 500 8 VAL A 12 74.76 23.02 REMARK 500 8 CYS A 37 -62.85 -97.22 REMARK 500 REMARK 500 THIS ENTRY HAS 198 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6221 RELATED DB: BMRB REMARK 900 THE SAME PROTEIN DBREF 1XSF A 1 108 UNP O05594 O05594_MYCTU 255 362 SEQRES 1 A 108 ASN VAL VAL VAL THR PRO ALA HIS GLU ALA VAL VAL ARG SEQRES 2 A 108 VAL GLY THR LYS PRO GLY THR GLU VAL PRO PRO VAL ILE SEQRES 3 A 108 ASP GLY SER ILE TRP ASP ALA ILE ALA GLY CYS GLU ALA SEQRES 4 A 108 GLY GLY ASN TRP ALA ILE ASN THR GLY ASN GLY TYR TYR SEQRES 5 A 108 GLY GLY VAL GLN PHE ASP GLN GLY THR TRP GLU ALA ASN SEQRES 6 A 108 GLY GLY LEU ARG TYR ALA PRO ARG ALA ASP LEU ALA THR SEQRES 7 A 108 ARG GLU GLU GLN ILE ALA VAL ALA GLU VAL THR ARG LEU SEQRES 8 A 108 ARG GLN GLY TRP GLY ALA TRP PRO VAL CYS ALA ALA ARG SEQRES 9 A 108 ALA GLY ALA ARG HELIX 1 1 ASP A 27 ALA A 39 1 13 HELIX 2 2 ASP A 58 ASN A 65 1 8 HELIX 3 3 GLY A 66 TYR A 70 5 5 HELIX 4 4 THR A 78 GLY A 94 1 17 HELIX 5 5 PRO A 99 GLY A 106 1 8 SSBOND 1 CYS A 37 CYS A 101 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20 MODEL 21 MODEL 22 MODEL 23 MODEL 24 MODEL 25 MODEL 26 MODEL 27 MODEL 28 MODEL 29 MODEL 30