HEADER HORMONE RECEPTOR 12-OCT-04 1XQC TITLE X-RAY STRUCTURE OF ERALPHA LBD BOUND TO A TETRAHYDROISOQUINOLINE SERM TITLE 2 LIGAND AT 2.05A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN; COMPND 5 SYNONYM: ESTROGEN RECEPTOR ALPHA, ER, ESTRADIOL RECEPTOR, ER-ALPHA; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PXI317 KEYWDS ALPHA-HELICAL SANDWICH, NUCLEAR HORMONE RECEPTOR, LIGAND BINDING KEYWDS 2 DOMAIN, HORMONE RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR J.RENAUD,S.F.BISCHOFF,T.BUHL,P.FLOERSHEIM,B.FOURNIER,M.GEISER, AUTHOR 2 C.HALLEUX,J.KALLEN,H.J.KELLER,P.RAMAGE REVDAT 3 10-NOV-21 1XQC 1 REMARK SEQADV REVDAT 2 24-FEB-09 1XQC 1 VERSN REVDAT 1 01-FEB-05 1XQC 0 JRNL AUTH J.RENAUD,S.F.BISCHOFF,T.BUHL,P.FLOERSHEIM,B.FOURNIER, JRNL AUTH 2 M.GEISER,C.HALLEUX,J.KALLEN,H.J.KELLER,P.RAMAGE JRNL TITL SELECTIVE ESTROGEN RECEPTOR MODULATORS WITH CONFORMATIONALLY JRNL TITL 2 RESTRICTED SIDE CHAINS. SYNTHESIS AND STRUCTURE-ACTIVITY JRNL TITL 3 RELATIONSHIP OF ERALPHA-SELECTIVE TETRAHYDROISOQUINOLINE JRNL TITL 4 LIGANDS JRNL REF J.MED.CHEM. V. 48 364 2005 JRNL REFN ISSN 0022-2623 JRNL PMID 15658851 JRNL DOI 10.1021/JM040858P REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 55974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2992 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3768 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 204 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7112 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 132 REMARK 3 SOLVENT ATOMS : 374 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.99000 REMARK 3 B22 (A**2) : -1.95000 REMARK 3 B33 (A**2) : -4.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.47000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.245 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.199 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.493 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7386 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 7042 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9964 ; 1.554 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16350 ; 0.880 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 874 ; 6.020 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1178 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7818 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1394 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1929 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 7989 ; 0.229 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 4216 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 318 ; 0.212 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.218 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 125 ; 0.270 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.286 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4422 ; 0.942 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7100 ; 1.693 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2964 ; 2.252 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2864 ; 3.581 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XQC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000030642. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-AUG-01; 12-JUL-01 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : ESRF; ROTATING ANODE REMARK 200 BEAMLINE : BM1A; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.8727; 1.5418 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; MAC SCIENCE DIP REMARK 200 -2030 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59332 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09500 REMARK 200 FOR THE DATA SET : 22.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42200 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1UOM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG-550ME, SODIUM CHLORIDE, BICINE, PH REMARK 280 9.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 78.28450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 300 REMARK 465 SER A 301 REMARK 465 LYS A 302 REMARK 465 LYS A 303 REMARK 465 ASN A 304 REMARK 465 SER A 305 REMARK 465 LEU A 306 REMARK 465 TYR A 331 REMARK 465 ASP A 332 REMARK 465 PRO A 333 REMARK 465 THR A 334 REMARK 465 ARG A 335 REMARK 465 PRO A 336 REMARK 465 PHE A 337 REMARK 465 SER A 338 REMARK 465 GLU A 339 REMARK 465 ALA A 340 REMARK 465 LEU A 462 REMARK 465 SER A 463 REMARK 465 LYS A 529 REMARK 465 SER A 530 REMARK 465 LYS A 531 REMARK 465 ASN A 532 REMARK 465 VAL A 533 REMARK 465 VAL A 534 REMARK 465 LEU A 549 REMARK 465 HIS A 550 REMARK 465 ALA A 551 REMARK 465 PRO A 552 REMARK 465 THR A 553 REMARK 465 MET B 300 REMARK 465 SER B 301 REMARK 465 LYS B 302 REMARK 465 LYS B 303 REMARK 465 ASN B 304 REMARK 465 SER B 305 REMARK 465 LEU B 306 REMARK 465 TYR B 331 REMARK 465 ASP B 332 REMARK 465 PRO B 333 REMARK 465 THR B 334 REMARK 465 ARG B 335 REMARK 465 PRO B 336 REMARK 465 PHE B 337 REMARK 465 SER B 338 REMARK 465 GLU B 339 REMARK 465 ALA B 340 REMARK 465 LEU B 462 REMARK 465 SER B 463 REMARK 465 TYR B 526 REMARK 465 SER B 527 REMARK 465 MET B 528 REMARK 465 LYS B 529 REMARK 465 SER B 530 REMARK 465 LYS B 531 REMARK 465 ASN B 532 REMARK 465 VAL B 533 REMARK 465 VAL B 534 REMARK 465 LEU B 549 REMARK 465 HIS B 550 REMARK 465 ALA B 551 REMARK 465 PRO B 552 REMARK 465 THR B 553 REMARK 465 MET C 300 REMARK 465 SER C 301 REMARK 465 LYS C 302 REMARK 465 LYS C 303 REMARK 465 ASN C 304 REMARK 465 SER C 305 REMARK 465 LEU C 306 REMARK 465 TYR C 331 REMARK 465 ASP C 332 REMARK 465 PRO C 333 REMARK 465 THR C 334 REMARK 465 ARG C 335 REMARK 465 PRO C 336 REMARK 465 PHE C 337 REMARK 465 SER C 338 REMARK 465 GLU C 339 REMARK 465 ALA C 340 REMARK 465 LEU C 462 REMARK 465 SER C 463 REMARK 465 LYS C 529 REMARK 465 SER C 530 REMARK 465 LYS C 531 REMARK 465 ASN C 532 REMARK 465 VAL C 533 REMARK 465 VAL C 534 REMARK 465 LEU C 549 REMARK 465 HIS C 550 REMARK 465 ALA C 551 REMARK 465 PRO C 552 REMARK 465 THR C 553 REMARK 465 MET D 300 REMARK 465 SER D 301 REMARK 465 LYS D 302 REMARK 465 LYS D 303 REMARK 465 ASN D 304 REMARK 465 SER D 305 REMARK 465 LEU D 306 REMARK 465 TYR D 331 REMARK 465 ASP D 332 REMARK 465 PRO D 333 REMARK 465 THR D 334 REMARK 465 ARG D 335 REMARK 465 PRO D 336 REMARK 465 PHE D 337 REMARK 465 SER D 338 REMARK 465 GLU D 339 REMARK 465 ALA D 340 REMARK 465 LEU D 462 REMARK 465 SER D 463 REMARK 465 TYR D 526 REMARK 465 SER D 527 REMARK 465 MET D 528 REMARK 465 LYS D 529 REMARK 465 SER D 530 REMARK 465 LYS D 531 REMARK 465 ASN D 532 REMARK 465 VAL D 533 REMARK 465 VAL D 534 REMARK 465 LEU D 549 REMARK 465 HIS D 550 REMARK 465 ALA D 551 REMARK 465 PRO D 552 REMARK 465 THR D 553 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL D 422 O HOH D 4077 2.00 REMARK 500 O MET A 396 NH1 ARG A 436 2.11 REMARK 500 O LEU B 525 O HOH B 2064 2.16 REMARK 500 O LYS B 416 O HOH B 2053 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 328 ND2 ASN B 359 1556 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 394 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 480 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 538 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 351 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP C 313 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP C 321 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP C 374 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG C 394 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP C 480 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP D 313 CB - CG - OD2 ANGL. DEV. = 8.2 DEGREES REMARK 500 ASP D 538 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 398 56.69 -148.52 REMARK 500 SER B 417 -49.62 -172.19 REMARK 500 HIS B 547 67.96 -101.43 REMARK 500 LEU C 408 87.65 -154.91 REMARK 500 PRO D 399 125.97 -32.69 REMARK 500 ALA D 546 74.34 57.46 REMARK 500 HIS D 547 78.36 -67.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AEJ A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AEJ B 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AEJ C 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AEJ D 4001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UOM RELATED DB: PDB DBREF 1XQC A 301 553 UNP P03372 ESR1_HUMAN 301 553 DBREF 1XQC B 301 553 UNP P03372 ESR1_HUMAN 301 553 DBREF 1XQC C 301 553 UNP P03372 ESR1_HUMAN 301 553 DBREF 1XQC D 301 553 UNP P03372 ESR1_HUMAN 301 553 SEQADV 1XQC MET A 300 UNP P03372 INITIATING METHIONINE SEQADV 1XQC SER A 381 UNP P03372 CYS 381 ENGINEERED MUTATION SEQADV 1XQC SER A 417 UNP P03372 CYS 417 ENGINEERED MUTATION SEQADV 1XQC SER A 530 UNP P03372 CYS 530 ENGINEERED MUTATION SEQADV 1XQC MET B 300 UNP P03372 INITIATING METHIONINE SEQADV 1XQC SER B 381 UNP P03372 CYS 381 ENGINEERED MUTATION SEQADV 1XQC SER B 417 UNP P03372 CYS 417 ENGINEERED MUTATION SEQADV 1XQC SER B 530 UNP P03372 CYS 530 ENGINEERED MUTATION SEQADV 1XQC MET C 300 UNP P03372 INITIATING METHIONINE SEQADV 1XQC SER C 381 UNP P03372 CYS 381 ENGINEERED MUTATION SEQADV 1XQC SER C 417 UNP P03372 CYS 417 ENGINEERED MUTATION SEQADV 1XQC SER C 530 UNP P03372 CYS 530 ENGINEERED MUTATION SEQADV 1XQC MET D 300 UNP P03372 INITIATING METHIONINE SEQADV 1XQC SER D 381 UNP P03372 CYS 381 ENGINEERED MUTATION SEQADV 1XQC SER D 417 UNP P03372 CYS 417 ENGINEERED MUTATION SEQADV 1XQC SER D 530 UNP P03372 CYS 530 ENGINEERED MUTATION SEQRES 1 A 254 MET SER LYS LYS ASN SER LEU ALA LEU SER LEU THR ALA SEQRES 2 A 254 ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU PRO PRO SEQRES 3 A 254 ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO PHE SER SEQRES 4 A 254 GLU ALA SER MET MET GLY LEU LEU THR ASN LEU ALA ASP SEQRES 5 A 254 ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS ARG VAL SEQRES 6 A 254 PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN VAL HIS SEQRES 7 A 254 LEU LEU GLU SER ALA TRP LEU GLU ILE LEU MET ILE GLY SEQRES 8 A 254 LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS LEU LEU SEQRES 9 A 254 PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN GLY LYS SEQRES 10 A 254 SER VAL GLU GLY MET VAL GLU ILE PHE ASP MET LEU LEU SEQRES 11 A 254 ALA THR SER SER ARG PHE ARG MET MET ASN LEU GLN GLY SEQRES 12 A 254 GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU LEU ASN SEQRES 13 A 254 SER GLY VAL TYR THR PHE LEU SER SER THR LEU LYS SER SEQRES 14 A 254 LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU ASP LYS SEQRES 15 A 254 ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS ALA GLY SEQRES 16 A 254 LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA GLN LEU SEQRES 17 A 254 LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER ASN LYS SEQRES 18 A 254 GLY MET GLU HIS LEU TYR SER MET LYS SER LYS ASN VAL SEQRES 19 A 254 VAL PRO LEU TYR ASP LEU LEU LEU GLU MET LEU ASP ALA SEQRES 20 A 254 HIS ARG LEU HIS ALA PRO THR SEQRES 1 B 254 MET SER LYS LYS ASN SER LEU ALA LEU SER LEU THR ALA SEQRES 2 B 254 ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU PRO PRO SEQRES 3 B 254 ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO PHE SER SEQRES 4 B 254 GLU ALA SER MET MET GLY LEU LEU THR ASN LEU ALA ASP SEQRES 5 B 254 ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS ARG VAL SEQRES 6 B 254 PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN VAL HIS SEQRES 7 B 254 LEU LEU GLU SER ALA TRP LEU GLU ILE LEU MET ILE GLY SEQRES 8 B 254 LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS LEU LEU SEQRES 9 B 254 PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN GLY LYS SEQRES 10 B 254 SER VAL GLU GLY MET VAL GLU ILE PHE ASP MET LEU LEU SEQRES 11 B 254 ALA THR SER SER ARG PHE ARG MET MET ASN LEU GLN GLY SEQRES 12 B 254 GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU LEU ASN SEQRES 13 B 254 SER GLY VAL TYR THR PHE LEU SER SER THR LEU LYS SER SEQRES 14 B 254 LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU ASP LYS SEQRES 15 B 254 ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS ALA GLY SEQRES 16 B 254 LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA GLN LEU SEQRES 17 B 254 LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER ASN LYS SEQRES 18 B 254 GLY MET GLU HIS LEU TYR SER MET LYS SER LYS ASN VAL SEQRES 19 B 254 VAL PRO LEU TYR ASP LEU LEU LEU GLU MET LEU ASP ALA SEQRES 20 B 254 HIS ARG LEU HIS ALA PRO THR SEQRES 1 C 254 MET SER LYS LYS ASN SER LEU ALA LEU SER LEU THR ALA SEQRES 2 C 254 ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU PRO PRO SEQRES 3 C 254 ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO PHE SER SEQRES 4 C 254 GLU ALA SER MET MET GLY LEU LEU THR ASN LEU ALA ASP SEQRES 5 C 254 ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS ARG VAL SEQRES 6 C 254 PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN VAL HIS SEQRES 7 C 254 LEU LEU GLU SER ALA TRP LEU GLU ILE LEU MET ILE GLY SEQRES 8 C 254 LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS LEU LEU SEQRES 9 C 254 PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN GLY LYS SEQRES 10 C 254 SER VAL GLU GLY MET VAL GLU ILE PHE ASP MET LEU LEU SEQRES 11 C 254 ALA THR SER SER ARG PHE ARG MET MET ASN LEU GLN GLY SEQRES 12 C 254 GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU LEU ASN SEQRES 13 C 254 SER GLY VAL TYR THR PHE LEU SER SER THR LEU LYS SER SEQRES 14 C 254 LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU ASP LYS SEQRES 15 C 254 ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS ALA GLY SEQRES 16 C 254 LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA GLN LEU SEQRES 17 C 254 LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER ASN LYS SEQRES 18 C 254 GLY MET GLU HIS LEU TYR SER MET LYS SER LYS ASN VAL SEQRES 19 C 254 VAL PRO LEU TYR ASP LEU LEU LEU GLU MET LEU ASP ALA SEQRES 20 C 254 HIS ARG LEU HIS ALA PRO THR SEQRES 1 D 254 MET SER LYS LYS ASN SER LEU ALA LEU SER LEU THR ALA SEQRES 2 D 254 ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU PRO PRO SEQRES 3 D 254 ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO PHE SER SEQRES 4 D 254 GLU ALA SER MET MET GLY LEU LEU THR ASN LEU ALA ASP SEQRES 5 D 254 ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS ARG VAL SEQRES 6 D 254 PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN VAL HIS SEQRES 7 D 254 LEU LEU GLU SER ALA TRP LEU GLU ILE LEU MET ILE GLY SEQRES 8 D 254 LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS LEU LEU SEQRES 9 D 254 PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN GLY LYS SEQRES 10 D 254 SER VAL GLU GLY MET VAL GLU ILE PHE ASP MET LEU LEU SEQRES 11 D 254 ALA THR SER SER ARG PHE ARG MET MET ASN LEU GLN GLY SEQRES 12 D 254 GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU LEU ASN SEQRES 13 D 254 SER GLY VAL TYR THR PHE LEU SER SER THR LEU LYS SER SEQRES 14 D 254 LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU ASP LYS SEQRES 15 D 254 ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS ALA GLY SEQRES 16 D 254 LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA GLN LEU SEQRES 17 D 254 LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER ASN LYS SEQRES 18 D 254 GLY MET GLU HIS LEU TYR SER MET LYS SER LYS ASN VAL SEQRES 19 D 254 VAL PRO LEU TYR ASP LEU LEU LEU GLU MET LEU ASP ALA SEQRES 20 D 254 HIS ARG LEU HIS ALA PRO THR HET AEJ A1001 33 HET AEJ B2001 33 HET AEJ C3001 33 HET AEJ D4001 33 HETNAM AEJ (1S)-1-{4-[(9AR)-OCTAHYDRO-2H-PYRIDO[1,2-A]PYRAZIN-2- HETNAM 2 AEJ YL]PHENYL}-2-PHENYL-1,2,3,4-TETRAHYDROISOQUINOLIN-6-OL HETSYN AEJ 1-[4-(OCTAHYDRO-PYRIDO[1,2-A]PYRAZIN-2-YL)-PHENYL]-2- HETSYN 2 AEJ PHENYL-1,2,3,4-TETRAHYDRO-ISOQUINOLIN-6-OL FORMUL 5 AEJ 4(C29 H33 N3 O) FORMUL 9 HOH *374(H2 O) HELIX 1 1 THR A 311 ALA A 322 1 12 HELIX 2 2 SER A 341 ARG A 363 1 23 HELIX 3 3 THR A 371 MET A 396 1 26 HELIX 4 4 ASP A 411 LYS A 416 1 6 HELIX 5 5 GLY A 420 MET A 438 1 19 HELIX 6 6 GLN A 441 SER A 456 1 16 HELIX 7 7 THR A 465 ALA A 493 1 29 HELIX 8 8 THR A 496 SER A 527 1 32 HELIX 9 9 PRO A 535 HIS A 547 1 13 HELIX 10 10 THR B 311 ALA B 322 1 12 HELIX 11 11 SER B 341 LYS B 362 1 22 HELIX 12 12 GLY B 366 LEU B 370 5 5 HELIX 13 13 THR B 371 SER B 395 1 25 HELIX 14 14 ASN B 413 GLY B 415 5 3 HELIX 15 15 GLY B 420 ASN B 439 1 20 HELIX 16 16 GLN B 441 SER B 456 1 16 HELIX 17 17 GLY B 457 PHE B 461 5 5 HELIX 18 18 THR B 465 ALA B 493 1 29 HELIX 19 19 THR B 496 LEU B 525 1 30 HELIX 20 20 PRO B 535 ASP B 545 1 11 HELIX 21 21 THR C 311 ALA C 322 1 12 HELIX 22 22 SER C 341 ARG C 363 1 23 HELIX 23 23 THR C 371 MET C 396 1 26 HELIX 24 24 ASP C 411 SER C 417 1 7 HELIX 25 25 GLU C 423 ASN C 439 1 17 HELIX 26 26 GLN C 441 SER C 456 1 16 HELIX 27 27 THR C 465 ALA C 493 1 29 HELIX 28 28 THR C 496 MET C 528 1 33 HELIX 29 29 PRO C 535 HIS C 547 1 13 HELIX 30 30 THR D 311 GLU D 323 1 13 HELIX 31 31 SER D 341 LYS D 362 1 22 HELIX 32 32 GLY D 366 LEU D 370 5 5 HELIX 33 33 THR D 371 SER D 395 1 25 HELIX 34 34 ARG D 412 VAL D 418 1 7 HELIX 35 35 GLY D 420 ASN D 439 1 20 HELIX 36 36 GLN D 441 SER D 456 1 16 HELIX 37 37 GLY D 457 PHE D 461 5 5 HELIX 38 38 THR D 465 ALA D 493 1 29 HELIX 39 39 THR D 496 LEU D 525 1 30 HELIX 40 40 PRO D 535 ALA D 546 1 12 SHEET 1 A 2 LEU A 402 ALA A 405 0 SHEET 2 A 2 LEU A 408 LEU A 410 -1 O LEU A 410 N LEU A 402 SHEET 1 B 2 LYS B 401 ALA B 405 0 SHEET 2 B 2 LEU B 408 ASP B 411 -1 O LEU B 410 N LEU B 402 SHEET 1 C 2 LEU C 402 ALA C 405 0 SHEET 2 C 2 LEU C 408 LEU C 410 -1 O LEU C 408 N ALA C 405 SHEET 1 D 2 LYS D 401 ALA D 405 0 SHEET 2 D 2 LEU D 408 ASP D 411 -1 O LEU D 410 N LEU D 402 SITE 1 AC1 9 LEU A 346 ALA A 350 ASP A 351 GLU A 353 SITE 2 AC1 9 TRP A 383 LEU A 387 ARG A 394 LEU A 536 SITE 3 AC1 9 HOH A1003 SITE 1 AC2 11 LEU B 346 THR B 347 ALA B 350 ASP B 351 SITE 2 AC2 11 GLU B 353 TRP B 383 ARG B 394 MET B 421 SITE 3 AC2 11 GLY B 521 HIS B 524 LEU B 525 SITE 1 AC3 12 LEU C 346 ALA C 350 ASP C 351 GLU C 353 SITE 2 AC3 12 TRP C 383 ARG C 394 GLY C 420 GLY C 521 SITE 3 AC3 12 HIS C 524 LEU C 525 HOH C3003 HOH C3072 SITE 1 AC4 11 LEU D 346 ALA D 350 ASP D 351 GLU D 353 SITE 2 AC4 11 LEU D 354 TRP D 383 ARG D 394 MET D 421 SITE 3 AC4 11 HIS D 524 LEU D 536 HOH D4009 CRYST1 55.114 156.569 58.962 90.00 90.35 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018144 0.000000 0.000111 0.00000 SCALE2 0.000000 0.006387 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016960 0.00000