HEADER LIGASE 05-OCT-04 1XNG TITLE CRYSTAL STRUCTURE OF NH3-DEPENDENT NAD+ SYNTHETASE FROM TITLE 2 HELICOBACTER PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: NH(3)-DEPENDENT NAD(+) SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 6.3.1.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 210; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS NH3-DEPENDENT NAD+ SYNTHETASE, HELICOBACTER PYLORI, KEYWDS 2 AMIDOTRANSFERASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR G.B.KANG,Y.S.KIM,Y.J.IM,S.H.RHO,J.H.LEE,S.H.EOM REVDAT 3 24-FEB-09 1XNG 1 VERSN REVDAT 2 03-MAY-05 1XNG 1 JRNL AUTHOR REVDAT 1 05-APR-05 1XNG 0 JRNL AUTH G.B.KANG,Y.S.KIM,Y.J.IM,S.H.RHO,J.H.LEE,S.H.EOM JRNL TITL CRYSTAL STRUCTURE OF NH3-DEPENDENT NAD+ SYNTHETASE JRNL TITL 2 FROM HELICOBACTER PYLORI JRNL REF PROTEINS V. 58 985 2005 JRNL REFN ISSN 0887-3585 JRNL PMID 15645437 JRNL DOI 10.1002/PROT.20377 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 59832 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 6089 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5752 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 669 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4056 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 152 REMARK 3 SOLVENT ATOMS : 249 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.12 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.85 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XNG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-OCT-04. REMARK 100 THE RCSB ID CODE IS RCSB030546. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 294 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61028 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 42.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 50.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 41.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL, PEG 400, AMMONIUM REMARK 280 SULFATE, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.89600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 83.79200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 ASN A 258 REMARK 465 PRO A 259 REMARK 465 GLU A 260 REMARK 465 LEU A 261 REMARK 465 GLU A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 465 HIS A 265 REMARK 465 HIS A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 HIS B 265 REMARK 465 HIS B 266 REMARK 465 HIS B 267 REMARK 465 HIS B 268 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 ASP A 4 CG OD1 OD2 REMARK 470 GLU A 66 CG CD OE1 OE2 REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 LYS A 255 CG CD CE NZ REMARK 470 PHE A 257 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 GLU B 66 CG CD OE1 OE2 REMARK 470 GLU B 260 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 50 -123.87 51.55 REMARK 500 SER A 60 -166.93 -107.16 REMARK 500 LYS B 50 -115.26 54.55 REMARK 500 GLN B 215 -20.41 -160.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 119 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 309 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 183 O REMARK 620 2 ATP A 303 O1G 98.2 REMARK 620 3 ATP A 303 O2B 175.8 77.6 REMARK 620 4 ATP A 303 O2A 92.0 79.5 87.4 REMARK 620 5 HOH A 334 O 90.2 165.2 93.8 112.5 REMARK 620 6 HOH A 381 O 87.4 84.4 92.0 163.6 83.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 308 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 183 O REMARK 620 2 ATP B 304 O2B 123.2 REMARK 620 3 ATP B 304 O1G 75.5 64.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 308 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 309 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DND A 301 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DND B 302 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 303 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XNH RELATED DB: PDB REMARK 900 THE SAME PROTEIN, NATIVE DBREF 1XNG A 1 260 UNP O25096 NADE_HELPY 1 260 DBREF 1XNG B 1 260 UNP O25096 NADE_HELPY 1 260 SEQADV 1XNG LEU A 261 UNP O25096 CLONING ARTIFACT SEQADV 1XNG GLU A 262 UNP O25096 CLONING ARTIFACT SEQADV 1XNG HIS A 263 UNP O25096 CLONING ARTIFACT SEQADV 1XNG HIS A 264 UNP O25096 CLONING ARTIFACT SEQADV 1XNG HIS A 265 UNP O25096 CLONING ARTIFACT SEQADV 1XNG HIS A 266 UNP O25096 CLONING ARTIFACT SEQADV 1XNG HIS A 267 UNP O25096 CLONING ARTIFACT SEQADV 1XNG HIS A 268 UNP O25096 CLONING ARTIFACT SEQADV 1XNG LEU B 261 UNP O25096 CLONING ARTIFACT SEQADV 1XNG GLU B 262 UNP O25096 CLONING ARTIFACT SEQADV 1XNG HIS B 263 UNP O25096 CLONING ARTIFACT SEQADV 1XNG HIS B 264 UNP O25096 CLONING ARTIFACT SEQADV 1XNG HIS B 265 UNP O25096 CLONING ARTIFACT SEQADV 1XNG HIS B 266 UNP O25096 CLONING ARTIFACT SEQADV 1XNG HIS B 267 UNP O25096 CLONING ARTIFACT SEQADV 1XNG HIS B 268 UNP O25096 CLONING ARTIFACT SEQRES 1 A 268 MET GLN LYS ASP TYR GLN LYS LEU ILE VAL TYR LEU CYS SEQRES 2 A 268 ASP PHE LEU GLU LYS GLU VAL GLN LYS ARG GLY PHE LYS SEQRES 3 A 268 LYS VAL VAL TYR GLY LEU SER GLY GLY LEU ASP SER ALA SEQRES 4 A 268 VAL VAL GLY VAL LEU CYS GLN LYS VAL PHE LYS GLU ASN SEQRES 5 A 268 ALA HIS ALA LEU LEU MET PRO SER SER VAL SER MET PRO SEQRES 6 A 268 GLU ASN LYS THR ASP ALA LEU ASN LEU CYS GLU LYS PHE SEQRES 7 A 268 SER ILE PRO TYR THR GLU TYR SER ILE ALA PRO TYR ASP SEQRES 8 A 268 ALA ILE PHE SER SER HIS PHE LYS ASP ALA SER LEU THR SEQRES 9 A 268 ARG LYS GLY ASN PHE CYS ALA ARG LEU ARG MET ALA PHE SEQRES 10 A 268 LEU TYR ASP TYR SER LEU LYS SER ASP SER LEU VAL ILE SEQRES 11 A 268 GLY THR SER ASN LYS SER GLU ARG MET LEU GLY TYR GLY SEQRES 12 A 268 THR LEU PHE GLY ASP LEU ALA CYS ALA ILE ASN PRO ILE SEQRES 13 A 268 GLY GLU LEU PHE LYS THR GLU VAL TYR GLU LEU ALA ARG SEQRES 14 A 268 ARG LEU ASN ILE PRO LYS LYS ILE LEU ASN LYS PRO PRO SEQRES 15 A 268 SER ALA ASP LEU PHE VAL GLY GLN SER ASP GLU LYS ASP SEQRES 16 A 268 LEU GLY TYR PRO TYR SER VAL ILE ASP PRO LEU LEU LYS SEQRES 17 A 268 ASP ILE GLU ALA LEU PHE GLN THR LYS PRO ILE ASP THR SEQRES 18 A 268 GLU THR LEU ALA GLN LEU GLY TYR ASP GLU ILE LEU VAL SEQRES 19 A 268 LYS ASN ILE THR SER ARG ILE GLN LYS ASN ALA PHE LYS SEQRES 20 A 268 LEU GLU LEU PRO ALA ILE ALA LYS ARG PHE ASN PRO GLU SEQRES 21 A 268 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 268 MET GLN LYS ASP TYR GLN LYS LEU ILE VAL TYR LEU CYS SEQRES 2 B 268 ASP PHE LEU GLU LYS GLU VAL GLN LYS ARG GLY PHE LYS SEQRES 3 B 268 LYS VAL VAL TYR GLY LEU SER GLY GLY LEU ASP SER ALA SEQRES 4 B 268 VAL VAL GLY VAL LEU CYS GLN LYS VAL PHE LYS GLU ASN SEQRES 5 B 268 ALA HIS ALA LEU LEU MET PRO SER SER VAL SER MET PRO SEQRES 6 B 268 GLU ASN LYS THR ASP ALA LEU ASN LEU CYS GLU LYS PHE SEQRES 7 B 268 SER ILE PRO TYR THR GLU TYR SER ILE ALA PRO TYR ASP SEQRES 8 B 268 ALA ILE PHE SER SER HIS PHE LYS ASP ALA SER LEU THR SEQRES 9 B 268 ARG LYS GLY ASN PHE CYS ALA ARG LEU ARG MET ALA PHE SEQRES 10 B 268 LEU TYR ASP TYR SER LEU LYS SER ASP SER LEU VAL ILE SEQRES 11 B 268 GLY THR SER ASN LYS SER GLU ARG MET LEU GLY TYR GLY SEQRES 12 B 268 THR LEU PHE GLY ASP LEU ALA CYS ALA ILE ASN PRO ILE SEQRES 13 B 268 GLY GLU LEU PHE LYS THR GLU VAL TYR GLU LEU ALA ARG SEQRES 14 B 268 ARG LEU ASN ILE PRO LYS LYS ILE LEU ASN LYS PRO PRO SEQRES 15 B 268 SER ALA ASP LEU PHE VAL GLY GLN SER ASP GLU LYS ASP SEQRES 16 B 268 LEU GLY TYR PRO TYR SER VAL ILE ASP PRO LEU LEU LYS SEQRES 17 B 268 ASP ILE GLU ALA LEU PHE GLN THR LYS PRO ILE ASP THR SEQRES 18 B 268 GLU THR LEU ALA GLN LEU GLY TYR ASP GLU ILE LEU VAL SEQRES 19 B 268 LYS ASN ILE THR SER ARG ILE GLN LYS ASN ALA PHE LYS SEQRES 20 B 268 LEU GLU LEU PRO ALA ILE ALA LYS ARG PHE ASN PRO GLU SEQRES 21 B 268 LEU GLU HIS HIS HIS HIS HIS HIS HET MG B 308 1 HET MG A 309 1 HET DND A 301 44 HET DND B 302 44 HET ATP A 303 31 HET ATP B 304 31 HETNAM MG MAGNESIUM ION HETNAM DND NICOTINIC ACID ADENINE DINUCLEOTIDE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETSYN DND DEAMIDO-NAD+ FORMUL 3 MG 2(MG 2+) FORMUL 5 DND 2(C21 H27 N6 O15 P2 1+) FORMUL 7 ATP 2(C10 H16 N5 O13 P3) FORMUL 9 HOH *249(H2 O) HELIX 1 1 ASP A 4 ARG A 23 1 20 HELIX 2 2 GLY A 35 LYS A 50 1 16 HELIX 3 3 MET A 64 SER A 79 1 16 HELIX 4 4 ILE A 87 PHE A 98 1 12 HELIX 5 5 SER A 102 ASP A 126 1 25 HELIX 6 6 ASN A 134 GLY A 141 1 8 HELIX 7 7 PHE A 160 LEU A 171 1 12 HELIX 8 8 PRO A 174 ASN A 179 1 6 HELIX 9 9 SER A 191 GLY A 197 1 7 HELIX 10 10 PRO A 199 PHE A 214 1 16 HELIX 11 11 ASP A 220 LEU A 227 1 8 HELIX 12 12 ASP A 230 ASN A 244 1 15 HELIX 13 13 ALA A 245 GLU A 249 5 5 HELIX 14 14 LYS B 3 ARG B 23 1 21 HELIX 15 15 GLY B 35 LYS B 50 1 16 HELIX 16 16 MET B 64 PHE B 78 1 15 HELIX 17 17 ILE B 87 PHE B 98 1 12 HELIX 18 18 SER B 102 ASP B 126 1 25 HELIX 19 19 ASN B 134 GLY B 141 1 8 HELIX 20 20 PHE B 160 LEU B 171 1 12 HELIX 21 21 PRO B 174 ASN B 179 1 6 HELIX 22 22 SER B 191 GLY B 197 1 7 HELIX 23 23 PRO B 199 PHE B 214 1 16 HELIX 24 24 ASP B 220 GLY B 228 1 9 HELIX 25 25 ASP B 230 ASN B 244 1 15 HELIX 26 26 ALA B 245 GLU B 249 5 5 SHEET 1 A 4 TYR A 82 GLU A 84 0 SHEET 2 A 4 ALA A 53 LEU A 57 1 N LEU A 57 O THR A 83 SHEET 3 A 4 VAL A 28 GLY A 31 1 N VAL A 28 O HIS A 54 SHEET 4 A 4 LEU A 128 VAL A 129 1 O LEU A 128 N VAL A 29 SHEET 1 B 2 ILE A 153 ASN A 154 0 SHEET 2 B 2 ALA B 252 ILE B 253 1 O ALA B 252 N ASN A 154 SHEET 1 C 2 ALA A 252 ILE A 253 0 SHEET 2 C 2 ILE B 153 ASN B 154 1 O ASN B 154 N ALA A 252 SHEET 1 D 4 TYR B 82 GLU B 84 0 SHEET 2 D 4 ALA B 53 LEU B 57 1 N LEU B 57 O THR B 83 SHEET 3 D 4 VAL B 28 GLY B 31 1 N TYR B 30 O LEU B 56 SHEET 4 D 4 LEU B 128 VAL B 129 1 O LEU B 128 N VAL B 29 LINK MG MG A 309 O SER A 183 1555 1555 2.27 LINK MG MG A 309 O1G ATP A 303 1555 1555 2.43 LINK MG MG A 309 O2B ATP A 303 1555 1555 2.27 LINK MG MG A 309 O2A ATP A 303 1555 1555 2.49 LINK MG MG A 309 O HOH A 334 1555 1555 2.48 LINK MG MG A 309 O HOH A 381 1555 1555 2.50 LINK MG MG B 308 O SER B 183 1555 1555 2.35 LINK MG MG B 308 O2B ATP B 304 1555 1555 2.49 LINK MG MG B 308 O1G ATP B 304 1555 1555 2.79 SITE 1 AC1 2 SER B 183 ATP B 304 SITE 1 AC2 4 SER A 183 ATP A 303 HOH A 334 HOH A 381 SITE 1 AC3 33 THR A 104 ASN A 108 ARG A 112 TYR A 142 SITE 2 AC3 33 GLY A 143 THR A 144 LEU A 145 ASP A 148 SITE 3 AC3 33 ALA A 184 LEU A 186 GLN A 190 PHE A 246 SITE 4 AC3 33 LYS A 247 ATP A 303 HOH A 318 HOH A 320 SITE 5 AC3 33 HOH A 329 HOH A 346 HOH A 347 HOH A 362 SITE 6 AC3 33 HOH A 371 HOH A 383 HOH A 390 HOH A 392 SITE 7 AC3 33 HOH A 400 ARG B 23 PHE B 25 TYR B 119 SITE 8 AC3 33 SER B 122 LEU B 123 LEU B 128 ALA B 152 SITE 9 AC3 33 HOH B 357 SITE 1 AC4 34 ARG A 23 PHE A 25 TYR A 119 SER A 122 SITE 2 AC4 34 LEU A 123 LEU A 128 ALA A 152 HOH A 312 SITE 3 AC4 34 HOH A 405 THR B 104 ASN B 108 ARG B 112 SITE 4 AC4 34 TYR B 142 GLY B 143 THR B 144 LEU B 145 SITE 5 AC4 34 ASP B 148 ALA B 184 LEU B 186 GLN B 190 SITE 6 AC4 34 ASP B 195 PHE B 246 LYS B 247 ATP B 304 SITE 7 AC4 34 HOH B 318 HOH B 319 HOH B 343 HOH B 369 SITE 8 AC4 34 HOH B 373 HOH B 381 HOH B 383 HOH B 395 SITE 9 AC4 34 HOH B 420 HOH B 429 SITE 1 AC5 23 GLY A 31 LEU A 32 SER A 33 GLY A 35 SITE 2 AC5 23 LEU A 36 ASP A 37 SER A 38 LEU A 56 SITE 3 AC5 23 MET A 58 ARG A 114 THR A 132 GLU A 137 SITE 4 AC5 23 LYS A 161 PRO A 182 SER A 183 DND A 301 SITE 5 AC5 23 MG A 309 HOH A 324 HOH A 338 HOH A 376 SITE 6 AC5 23 HOH A 383 HOH A 413 HOH A 423 SITE 1 AC6 22 GLY B 31 LEU B 32 SER B 33 GLY B 35 SITE 2 AC6 22 LEU B 36 ASP B 37 SER B 38 LEU B 56 SITE 3 AC6 22 MET B 58 ARG B 114 THR B 132 GLU B 137 SITE 4 AC6 22 LYS B 161 PRO B 182 SER B 183 DND B 302 SITE 5 AC6 22 MG B 308 HOH B 316 HOH B 343 HOH B 349 SITE 6 AC6 22 HOH B 370 HOH B 407 CRYST1 63.403 63.403 125.688 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015772 0.009106 0.000000 0.00000 SCALE2 0.000000 0.018212 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007956 0.00000