HEADER STRUCTURAL PROTEIN 15-FEB-05 1WYR TITLE SOLUTION STRUCTURE OF THE CH DOMAIN OF HUMAN RHO GUANINE NUCLEOTIDE TITLE 2 EXCHANGE FACTOR 6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CH DOMAIN; COMPND 5 SYNONYM: PAK-INTERACTING EXCHANGE FACTOR ALPHA, ALPHA-PIX, COOL-2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARHGEF6; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040910-16; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS CH DOMAIN, ALL-ALPHA, NPPSFA, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WYR 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WYR 1 VERSN REVDAT 1 15-AUG-05 1WYR 0 JRNL AUTH T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE CH DOMAIN OF HUMAN RHO GUANINE JRNL TITL 2 NUCLEOTIDE EXCHANGE FACTOR 6 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WYR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000024162. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.32MM CH DOMAIN U-15N,13C; 20MM REMARK 210 D-TRIS-HCL(PH 7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 49.69 36.38 REMARK 500 1 SER A 5 92.53 -65.27 REMARK 500 1 LYS A 40 -71.36 -35.29 REMARK 500 1 LEU A 48 -70.50 -54.39 REMARK 500 1 LYS A 59 124.71 -174.08 REMARK 500 1 THR A 106 -39.67 -37.85 REMARK 500 1 GLU A 115 125.40 -35.24 REMARK 500 1 SER A 120 133.92 -36.73 REMARK 500 2 LYS A 26 171.30 -50.29 REMARK 500 2 ILE A 28 90.56 -44.61 REMARK 500 2 LEU A 48 -70.81 -67.05 REMARK 500 2 LYS A 79 -30.55 -38.05 REMARK 500 3 LYS A 25 47.23 -83.90 REMARK 500 3 PRO A 64 98.43 -69.77 REMARK 500 3 SER A 101 -39.20 -37.88 REMARK 500 3 VAL A 103 -38.87 -39.14 REMARK 500 4 LYS A 26 169.06 -48.52 REMARK 500 4 PRO A 54 98.24 -69.77 REMARK 500 4 ALA A 68 -38.80 -38.70 REMARK 500 4 LYS A 79 -35.08 -35.16 REMARK 500 5 LYS A 26 168.80 -44.05 REMARK 500 5 LYS A 59 112.95 -167.38 REMARK 500 5 ALA A 68 -39.09 -36.13 REMARK 500 6 SER A 6 42.24 -105.16 REMARK 500 6 LYS A 26 177.85 -48.41 REMARK 500 6 ALA A 68 -35.77 -38.43 REMARK 500 6 LYS A 79 -37.39 -37.73 REMARK 500 6 SER A 101 -38.73 -35.26 REMARK 500 6 THR A 114 33.67 -87.49 REMARK 500 6 SER A 116 117.73 -39.75 REMARK 500 6 SER A 119 92.82 -67.75 REMARK 500 7 SER A 5 164.10 -44.73 REMARK 500 7 LEU A 48 -71.73 -73.01 REMARK 500 7 ILE A 49 -35.09 -36.98 REMARK 500 7 GLU A 87 156.16 -47.32 REMARK 500 7 SER A 101 -38.78 -37.82 REMARK 500 8 LEU A 48 -72.49 -71.26 REMARK 500 8 LYS A 59 129.03 -174.97 REMARK 500 8 SER A 101 -33.08 -38.66 REMARK 500 9 SER A 5 119.13 -170.00 REMARK 500 9 LYS A 26 174.64 -51.91 REMARK 500 9 ILE A 28 91.81 -43.94 REMARK 500 9 LYS A 40 -70.65 -34.28 REMARK 500 9 LEU A 48 -71.52 -65.62 REMARK 500 9 ALA A 68 -39.98 -39.57 REMARK 500 9 GLU A 115 144.87 -39.43 REMARK 500 10 PRO A 64 98.97 -69.85 REMARK 500 10 SER A 101 -38.99 -35.47 REMARK 500 10 SER A 116 47.92 -93.33 REMARK 500 11 LYS A 26 179.14 -48.91 REMARK 500 REMARK 500 THIS ENTRY HAS 111 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK001000001.2 RELATED DB: TARGETDB DBREF 1WYR A 8 115 UNP Q15052 ARHG6_HUMAN 4 111 SEQADV 1WYR GLY A 1 UNP Q15052 CLONING ARTIFACT SEQADV 1WYR SER A 2 UNP Q15052 CLONING ARTIFACT SEQADV 1WYR SER A 3 UNP Q15052 CLONING ARTIFACT SEQADV 1WYR GLY A 4 UNP Q15052 CLONING ARTIFACT SEQADV 1WYR SER A 5 UNP Q15052 CLONING ARTIFACT SEQADV 1WYR SER A 6 UNP Q15052 CLONING ARTIFACT SEQADV 1WYR GLY A 7 UNP Q15052 CLONING ARTIFACT SEQADV 1WYR SER A 116 UNP Q15052 CLONING ARTIFACT SEQADV 1WYR GLY A 117 UNP Q15052 CLONING ARTIFACT SEQADV 1WYR PRO A 118 UNP Q15052 CLONING ARTIFACT SEQADV 1WYR SER A 119 UNP Q15052 CLONING ARTIFACT SEQADV 1WYR SER A 120 UNP Q15052 CLONING ARTIFACT SEQADV 1WYR GLY A 121 UNP Q15052 CLONING ARTIFACT SEQRES 1 A 121 GLY SER SER GLY SER SER GLY GLU GLU GLN ILE VAL THR SEQRES 2 A 121 TRP LEU ILE SER LEU GLY VAL LEU GLU SER PRO LYS LYS SEQRES 3 A 121 THR ILE CYS ASP PRO GLU GLU PHE LEU LYS SER SER LEU SEQRES 4 A 121 LYS ASN GLY VAL VAL LEU CYS LYS LEU ILE ASN ARG LEU SEQRES 5 A 121 MET PRO GLY SER VAL GLU LYS PHE CYS LEU ASP PRO GLN SEQRES 6 A 121 THR GLU ALA ASP CYS ILE ASN ASN ILE ASN ASP PHE LEU SEQRES 7 A 121 LYS GLY CYS ALA THR LEU GLN VAL GLU ILE PHE ASP PRO SEQRES 8 A 121 ASP ASP LEU TYR SER GLY VAL ASN PHE SER LYS VAL LEU SEQRES 9 A 121 SER THR LEU LEU ALA VAL ASN LYS ALA THR GLU SER GLY SEQRES 10 A 121 PRO SER SER GLY HELIX 1 1 GLY A 7 GLY A 19 1 13 HELIX 2 2 ASP A 30 GLY A 42 1 13 HELIX 3 3 GLY A 42 MET A 53 1 12 HELIX 4 4 THR A 66 GLN A 85 1 20 HELIX 5 5 ASP A 90 SER A 96 1 7 HELIX 6 6 ASN A 99 GLU A 115 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20