HEADER METAL BINDING PROTEIN 29-MAY-04 1WJP TITLE SOLUTION STRUCTURE OF ZF-C2H2 DOMAINS FROM HUMAN ZINC FINGER PROTEIN TITLE 2 295 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN 295; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-C2H2 DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA FH04710; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040126-28; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS ZF-C2H2 DOMAIN, ZINC BINDING, NUCLEIC ACID BINDING, KIAA1227 PROTEIN, KEYWDS 2 STRUCTURAL GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 3 INITIATIVE, RSGI, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.TOMIZAWA,T.KIGAWA,K.SAITO,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WJP 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1WJP 1 VERSN REVDAT 1 29-NOV-04 1WJP 0 JRNL AUTH T.TOMIZAWA,T.KIGAWA,K.SAITO,S.KOSHIBA,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF ZF-C2H2 DOMAINS FROM HUMAN ZINC FINGER JRNL TITL 2 PROTEIN 295 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WJP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023649. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.03MM ZF-C2H2 DOMAIN U-15N,13C; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.01MM ZNCL2; REMARK 210 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.901, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 10 -175.57 -69.82 REMARK 500 1 VAL A 11 129.22 -175.17 REMARK 500 1 ASN A 13 118.89 -167.68 REMARK 500 1 GLU A 15 118.33 -34.45 REMARK 500 1 PRO A 46 6.40 -69.74 REMARK 500 1 TYR A 47 -61.95 -102.72 REMARK 500 1 CYS A 72 82.97 -66.78 REMARK 500 1 MET A 76 52.82 35.04 REMARK 500 1 VAL A 92 -67.06 -98.29 REMARK 500 1 ASN A 97 -178.84 -49.93 REMARK 500 1 SER A 105 154.44 -40.12 REMARK 500 2 VAL A 11 134.15 -175.10 REMARK 500 2 ASN A 13 129.99 -170.02 REMARK 500 2 ASN A 23 45.81 70.63 REMARK 500 2 ALA A 42 -58.82 -29.80 REMARK 500 2 PRO A 46 5.93 -69.76 REMARK 500 2 TYR A 47 -61.01 -101.70 REMARK 500 2 CYS A 72 90.36 -65.02 REMARK 500 2 MET A 76 53.84 33.93 REMARK 500 2 VAL A 92 -66.10 -99.14 REMARK 500 2 ASN A 94 52.24 31.14 REMARK 500 2 MET A 98 106.12 -34.88 REMARK 500 2 PRO A 100 4.67 -69.73 REMARK 500 3 PRO A 46 5.73 -69.73 REMARK 500 3 CYS A 72 85.70 -66.65 REMARK 500 3 VAL A 92 -65.63 -99.12 REMARK 500 3 ASN A 96 44.93 -83.66 REMARK 500 3 MET A 98 138.01 -34.37 REMARK 500 3 PRO A 100 10.14 -69.77 REMARK 500 3 SER A 105 147.49 -34.64 REMARK 500 4 GLU A 15 113.60 -33.82 REMARK 500 4 ASN A 23 44.45 70.84 REMARK 500 4 PRO A 46 8.83 -69.84 REMARK 500 4 TYR A 47 -60.65 -109.31 REMARK 500 4 CYS A 72 85.14 -60.41 REMARK 500 4 MET A 76 55.01 38.12 REMARK 500 4 MET A 98 27.68 37.83 REMARK 500 4 ALA A 99 148.36 -34.70 REMARK 500 4 PRO A 100 96.85 -69.71 REMARK 500 5 SER A 3 -45.08 -130.82 REMARK 500 5 PRO A 46 6.52 -69.74 REMARK 500 5 TYR A 47 -60.04 -102.18 REMARK 500 5 SER A 49 41.66 74.53 REMARK 500 5 CYS A 72 80.61 -68.17 REMARK 500 5 MET A 76 54.83 32.68 REMARK 500 5 GLN A 95 -64.62 -90.12 REMARK 500 6 GLU A 15 133.37 -172.11 REMARK 500 6 ASN A 23 46.00 71.67 REMARK 500 6 CYS A 39 -9.66 -59.66 REMARK 500 6 PRO A 46 6.10 -69.81 REMARK 500 REMARK 500 THIS ENTRY HAS 173 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 19 SG REMARK 620 2 CYS A 22 SG 112.0 REMARK 620 3 HIS A 35 NE2 99.5 92.9 REMARK 620 4 CYS A 39 SG 117.3 119.4 110.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 45 SG REMARK 620 2 CYS A 48 SG 118.1 REMARK 620 3 HIS A 61 NE2 111.8 90.7 REMARK 620 4 CYS A 65 SG 118.3 118.2 90.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 72 SG REMARK 620 2 CYS A 75 SG 107.7 REMARK 620 3 HIS A 88 NE2 116.5 90.7 REMARK 620 4 HIS A 93 NE2 111.6 116.9 112.1 REMARK 620 N 1 2 3 REMARK 650 REMARK 650 HELIX REMARK 650 AUTHOR DETERMINATION METHOD: AUTHOR DETERMINED REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002001201.1 RELATED DB: TARGETDB DBREF 1WJP A 8 101 UNP Q9ULJ3 ZN295_HUMAN 713 806 SEQADV 1WJP GLY A 1 UNP Q9ULJ3 CLONING ARTIFACT SEQADV 1WJP SER A 2 UNP Q9ULJ3 CLONING ARTIFACT SEQADV 1WJP SER A 3 UNP Q9ULJ3 CLONING ARTIFACT SEQADV 1WJP GLY A 4 UNP Q9ULJ3 CLONING ARTIFACT SEQADV 1WJP SER A 5 UNP Q9ULJ3 CLONING ARTIFACT SEQADV 1WJP SER A 6 UNP Q9ULJ3 CLONING ARTIFACT SEQADV 1WJP GLY A 7 UNP Q9ULJ3 CLONING ARTIFACT SEQADV 1WJP SER A 102 UNP Q9ULJ3 CLONING ARTIFACT SEQADV 1WJP GLY A 103 UNP Q9ULJ3 CLONING ARTIFACT SEQADV 1WJP PRO A 104 UNP Q9ULJ3 CLONING ARTIFACT SEQADV 1WJP SER A 105 UNP Q9ULJ3 CLONING ARTIFACT SEQADV 1WJP SER A 106 UNP Q9ULJ3 CLONING ARTIFACT SEQADV 1WJP GLY A 107 UNP Q9ULJ3 CLONING ARTIFACT SEQRES 1 A 107 GLY SER SER GLY SER SER GLY ALA SER PRO VAL GLU ASN SEQRES 2 A 107 LYS GLU VAL TYR GLN CYS ARG LEU CYS ASN ALA LYS LEU SEQRES 3 A 107 SER SER LEU LEU GLU GLN GLY SER HIS GLU ARG LEU CYS SEQRES 4 A 107 ARG ASN ALA ALA VAL CYS PRO TYR CYS SER LEU ARG PHE SEQRES 5 A 107 PHE SER PRO GLU LEU LYS GLN GLU HIS GLU SER LYS CYS SEQRES 6 A 107 GLU TYR LYS LYS LEU THR CYS LEU GLU CYS MET ARG THR SEQRES 7 A 107 PHE LYS SER SER PHE SER ILE TRP ARG HIS GLN VAL GLU SEQRES 8 A 107 VAL HIS ASN GLN ASN ASN MET ALA PRO THR SER GLY PRO SEQRES 9 A 107 SER SER GLY HET ZN A 301 1 HET ZN A 501 1 HET ZN A 701 1 HETNAM ZN ZINC ION FORMUL 2 ZN 3(ZN 2+) HELIX 1 1 SER A 28 ALA A 42 1 15 HELIX 2 2 SER A 54 CYS A 65 1 12 HELIX 3 3 TYR A 67 LYS A 69 5 3 HELIX 4 4 SER A 81 VAL A 92 1 12 SHEET 1 A 2 THR A 71 CYS A 72 0 SHEET 2 A 2 ARG A 77 THR A 78 -1 O ARG A 77 N CYS A 72 LINK SG CYS A 19 ZN ZN A 301 1555 1555 2.36 LINK SG CYS A 22 ZN ZN A 301 1555 1555 2.32 LINK NE2 HIS A 35 ZN ZN A 301 1555 1555 2.37 LINK SG CYS A 39 ZN ZN A 301 1555 1555 2.32 LINK SG CYS A 45 ZN ZN A 501 1555 1555 2.33 LINK SG CYS A 48 ZN ZN A 501 1555 1555 2.33 LINK NE2 HIS A 61 ZN ZN A 501 1555 1555 2.37 LINK SG CYS A 65 ZN ZN A 501 1555 1555 2.33 LINK SG CYS A 72 ZN ZN A 701 1555 1555 2.35 LINK SG CYS A 75 ZN ZN A 701 1555 1555 2.34 LINK NE2 HIS A 88 ZN ZN A 701 1555 1555 2.33 LINK NE2 HIS A 93 ZN ZN A 701 1555 1555 2.34 SITE 1 AC1 4 CYS A 19 CYS A 22 HIS A 35 CYS A 39 SITE 1 AC2 5 CYS A 45 TYR A 47 CYS A 48 HIS A 61 SITE 2 AC2 5 CYS A 65 SITE 1 AC3 4 CYS A 72 CYS A 75 HIS A 88 HIS A 93 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20