HEADER DNA BINDING PROTEIN 28-MAY-04 1WI3 TITLE SOLUTION STRUCTURE OF THE HOMEODOMAIN OF KIAA1034 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING PROTEIN SATB2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HOMEODOMAIN; COMPND 5 SYNONYM: KIAA1034 PROTEIN, SPECIAL AT-RICH SEQUENCE-BINDING PROTEIN COMPND 6 2, TWO CUT DOMAINS-CONTAINING HOMEODOMAIN PROTEIN, SATB2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA FH00753; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040126-83; SOURCE 8 OTHER_DETAILS: CELL FREE SYNTHESIS KEYWDS SATB2, HOMEODOMAIN, HELIX-TURN-HELIX, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, DNA KEYWDS 3 BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.IZUMI,M.YOSHIDA,F.HAYASHI,R.HATTA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WI3 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WI3 1 VERSN REVDAT 1 28-NOV-04 1WI3 0 JRNL AUTH K.IZUMI,M.YOSHIDA,F.HAYASHI,R.HATTA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE HOMEODOMAIN OF KIAA1034 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.7 REMARK 3 AUTHORS : GUENTERT,P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WI3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023602. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.09MM 13C,15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL BUFFER; 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 2002045, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.893, REMARK 210 CYANA 1.0.7 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 50 H LYS A 54 1.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 129.28 179.42 REMARK 500 1 SER A 3 160.70 179.01 REMARK 500 1 SER A 5 135.04 -175.36 REMARK 500 1 ARG A 9 154.54 60.66 REMARK 500 1 ARG A 11 111.37 -176.47 REMARK 500 1 LEU A 16 -66.33 154.43 REMARK 500 1 GLU A 17 -83.34 -36.12 REMARK 500 1 ALA A 18 -59.96 -28.65 REMARK 500 1 ILE A 21 -75.98 -45.82 REMARK 500 1 LEU A 31 46.02 -144.76 REMARK 500 1 ALA A 43 -67.56 -98.77 REMARK 500 1 ASP A 46 22.30 81.14 REMARK 500 1 LYS A 64 -61.28 -155.93 REMARK 500 1 SER A 69 101.64 56.33 REMARK 500 2 SER A 3 96.94 62.45 REMARK 500 2 ARG A 9 97.20 51.07 REMARK 500 2 LEU A 16 -65.76 155.07 REMARK 500 2 GLU A 17 -83.38 -36.25 REMARK 500 2 ALA A 18 -63.18 -28.07 REMARK 500 2 TYR A 32 63.39 179.13 REMARK 500 2 ALA A 43 -68.60 -98.29 REMARK 500 2 ASP A 46 23.01 81.25 REMARK 500 2 HIS A 62 -74.93 -59.11 REMARK 500 2 HIS A 65 89.34 56.44 REMARK 500 2 SER A 70 122.23 178.74 REMARK 500 3 SER A 2 -60.72 -151.98 REMARK 500 3 SER A 3 161.44 65.00 REMARK 500 3 ILE A 14 119.48 61.65 REMARK 500 3 LEU A 16 -66.02 154.71 REMARK 500 3 GLU A 17 -83.32 -36.11 REMARK 500 3 ALA A 18 -60.92 -28.79 REMARK 500 3 LEU A 31 43.72 -146.84 REMARK 500 3 ALA A 43 -67.45 -98.59 REMARK 500 3 ASP A 46 21.17 81.23 REMARK 500 3 LYS A 64 159.21 68.05 REMARK 500 4 SER A 2 161.25 178.16 REMARK 500 4 SER A 5 -58.42 74.82 REMARK 500 4 SER A 6 164.75 -49.10 REMARK 500 4 LEU A 16 -71.34 158.14 REMARK 500 4 GLU A 17 -83.56 -35.32 REMARK 500 4 ALA A 18 -51.96 -28.99 REMARK 500 4 LEU A 19 -71.45 -52.42 REMARK 500 4 TYR A 32 63.09 -153.03 REMARK 500 4 ALA A 43 -67.18 -99.42 REMARK 500 4 ASP A 46 22.17 82.06 REMARK 500 4 HIS A 65 63.16 -170.34 REMARK 500 4 SER A 69 92.50 65.16 REMARK 500 5 SER A 2 90.08 50.65 REMARK 500 5 ARG A 9 85.35 43.53 REMARK 500 5 LEU A 16 -65.85 155.49 REMARK 500 REMARK 500 THIS ENTRY HAS 251 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002001010.1 RELATED DB: TARGETDB DBREF 1WI3 A 8 65 UNP Q9UPW6 SATB2_HUMAN 615 672 SEQADV 1WI3 GLY A 1 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WI3 SER A 2 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WI3 SER A 3 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WI3 GLY A 4 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WI3 SER A 5 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WI3 SER A 6 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WI3 GLY A 7 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WI3 SER A 66 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WI3 GLY A 67 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WI3 PRO A 68 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WI3 SER A 69 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WI3 SER A 70 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WI3 GLY A 71 UNP Q9UPW6 CLONING ARTIFACT SEQRES 1 A 71 GLY SER SER GLY SER SER GLY PRO ARG SER ARG THR LYS SEQRES 2 A 71 ILE SER LEU GLU ALA LEU GLY ILE LEU GLN SER PHE ILE SEQRES 3 A 71 HIS ASP VAL GLY LEU TYR PRO ASP GLN GLU ALA ILE HIS SEQRES 4 A 71 THR LEU SER ALA GLN LEU ASP LEU PRO LYS HIS THR ILE SEQRES 5 A 71 ILE LYS PHE PHE GLN ASN GLN ARG TYR HIS VAL LYS HIS SEQRES 6 A 71 SER GLY PRO SER SER GLY HELIX 1 1 LEU A 16 GLY A 30 1 15 HELIX 2 2 ASP A 34 LEU A 45 1 12 HELIX 3 3 PRO A 48 VAL A 63 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20