HEADER TRANSFERASE 14-AUG-03 1UK1 TITLE CRYSTAL STRUCTURE OF HUMAN POLY(ADP-RIBOSE) POLYMERASE TITLE 2 COMPLEXED WITH A POTENT INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY [ADP-RIBOSE] POLYMERASE-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: POLY(ADP-RIBOSE) POLYMERASE, PARP-1, ADPRT, COMPND 6 NAD(+) ADP-RIBOSYLTRANSFERASE-1, POLY[ADP-RIBOSE] COMPND 7 SYNTHETASE-1; COMPND 8 EC: 2.4.2.30; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX4T-2 KEYWDS PROTEIN-INHIBITOR COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.KINOSHITA REVDAT 2 24-FEB-09 1UK1 1 VERSN REVDAT 1 14-SEP-04 1UK1 0 JRNL AUTH K.HATTORI,Y.KIDO,H.YAMAMOTO,J.ISHIDA,K.KAMIJO, JRNL AUTH 2 K.MURANO,M.OHKUBO,T.KINOSHITA,A.IWASHITA,K.MIHARA, JRNL AUTH 3 S.YAMAZAKI,N.MATSUOKA,Y.TERAMURA,H.MIYAKE JRNL TITL RATIONAL APPROACHES TO DISCOVERY OF ORALLY ACTIVE JRNL TITL 2 AND BRAIN-PENETRABLE QUINAZOLINONE INHIBITORS OF JRNL TITL 3 POLY(ADP-RIBOSE)POLYMERASE JRNL REF J.MED.CHEM. V. 47 4151 2004 JRNL REFN ISSN 0022-2623 JRNL PMID 15293985 JRNL DOI 10.1021/JM0499256 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNX REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 15071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.257 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 760 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 15831 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 122 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.035 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5508 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : 0.51 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : 28.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.58 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UK1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-AUG-03. REMARK 100 THE RCSB ID CODE IS RCSB005913. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15831 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG400, AMMONIUM SULPHATE, TRIS- REMARK 280 HCL, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 89.98000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.63500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 89.98000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.63500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 742 CG HIS B 742 CD2 0.066 REMARK 500 HIS B 909 CG HIS B 909 CD2 0.054 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 704 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 TYR A 710 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 TYR A 737 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 806 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 TYR A 829 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 TYR A 829 C - N - CA ANGL. DEV. = 19.8 DEGREES REMARK 500 ARG A 847 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 847 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 TYR A 848 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 865 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP A 914 N - CA - CB ANGL. DEV. = 11.2 DEGREES REMARK 500 LYS A 945 CA - CB - CG ANGL. DEV. = -14.4 DEGREES REMARK 500 TYR A 989 CB - CG - CD1 ANGL. DEV. = -4.1 DEGREES REMARK 500 TYR B 689 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 GLN B 705 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 TYR B 710 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 735 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 TYR B 737 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASN B 754 N - CA - CB ANGL. DEV. = -11.6 DEGREES REMARK 500 MET B 764 CA - CB - CG ANGL. DEV. = 10.6 DEGREES REMARK 500 SER B 782 N - CA - C ANGL. DEV. = 17.8 DEGREES REMARK 500 ASP B 784 N - CA - C ANGL. DEV. = 16.5 DEGREES REMARK 500 ASP B 788 N - CA - C ANGL. DEV. = 17.0 DEGREES REMARK 500 TYR B 794 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 TYR B 817 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 HIS B 822 CA - CB - CG ANGL. DEV. = -10.6 DEGREES REMARK 500 TYR B 829 CB - CG - CD1 ANGL. DEV. = -4.1 DEGREES REMARK 500 CYS B 845 CA - CB - SG ANGL. DEV. = -13.6 DEGREES REMARK 500 ARG B 847 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 LEU B 854 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 ARG B 857 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 857 C - N - CA ANGL. DEV. = 15.5 DEGREES REMARK 500 GLU B 883 N - CA - C ANGL. DEV. = 16.7 DEGREES REMARK 500 TYR B 889 CB - CG - CD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 CYS B 908 CA - CB - SG ANGL. DEV. = 9.1 DEGREES REMARK 500 ILE B 916 CA - CB - CG1 ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 664 -14.68 -37.50 REMARK 500 GLU A 690 31.53 156.25 REMARK 500 LYS A 695 -84.28 -91.87 REMARK 500 LEU A 701 94.76 -22.86 REMARK 500 ARG A 704 -78.40 -28.92 REMARK 500 GLN A 722 41.56 -104.92 REMARK 500 SER A 724 149.73 69.88 REMARK 500 SER A 725 92.65 -38.13 REMARK 500 ILE A 729 -51.74 -28.43 REMARK 500 LYS A 747 -149.66 -112.46 REMARK 500 ASP A 783 47.90 -106.38 REMARK 500 SER A 785 -122.04 72.54 REMARK 500 LYS A 798 55.58 24.11 REMARK 500 ILE A 801 67.75 -118.11 REMARK 500 ARG A 806 -88.68 48.77 REMARK 500 GLU A 809 -41.38 -20.22 REMARK 500 THR A 824 -19.41 -2.56 REMARK 500 THR A 825 -60.87 -129.11 REMARK 500 HIS A 826 39.36 -78.20 REMARK 500 ALA A 828 99.39 -171.05 REMARK 500 TYR A 829 157.23 -33.58 REMARK 500 ASN A 856 90.51 64.72 REMARK 500 ARG A 865 157.02 -47.82 REMARK 500 PRO A 881 164.43 -42.96 REMARK 500 PRO A 882 44.58 -84.29 REMARK 500 GLU A 883 -26.31 -171.36 REMARK 500 LYS A 893 46.18 -100.87 REMARK 500 HIS A 909 46.27 72.86 REMARK 500 GLN A 912 -35.63 -33.50 REMARK 500 ASP A 914 75.41 170.08 REMARK 500 PRO A 915 31.11 -89.94 REMARK 500 ASP A 957 104.80 -55.83 REMARK 500 SER A 959 -0.32 -57.06 REMARK 500 ASN A 961 72.00 -101.74 REMARK 500 ILE A 962 134.11 -25.04 REMARK 500 ASP A 965 47.20 35.20 REMARK 500 SER A 977 173.60 -56.22 REMARK 500 ASP A 981 35.43 -38.94 REMARK 500 PHE A1009 -147.80 -61.63 REMARK 500 LYS B 667 -51.07 -22.77 REMARK 500 ASP B 671 9.29 -57.43 REMARK 500 LEU B 672 -31.29 -130.81 REMARK 500 MET B 682 -72.19 -47.16 REMARK 500 LYS B 700 35.74 -159.78 REMARK 500 GLN B 722 29.72 -66.79 REMARK 500 MET B 746 77.44 -169.12 REMARK 500 LYS B 747 103.87 48.24 REMARK 500 PRO B 749 153.46 -47.30 REMARK 500 GLN B 759 -70.12 -37.53 REMARK 500 LEU B 778 28.03 -62.23 REMARK 500 ARG B 779 -53.92 -125.25 REMARK 500 ASP B 784 116.24 -28.58 REMARK 500 SER B 785 -14.77 -43.36 REMARK 500 ASP B 788 102.50 38.03 REMARK 500 PRO B 789 -87.25 -3.68 REMARK 500 LEU B 797 6.75 -48.83 REMARK 500 THR B 799 -165.24 -128.50 REMARK 500 ASP B 805 92.66 -4.40 REMARK 500 ARG B 806 2.86 -48.50 REMARK 500 LYS B 819 -78.14 -57.48 REMARK 500 THR B 825 30.17 -73.16 REMARK 500 HIS B 826 47.39 -174.13 REMARK 500 TYR B 829 116.99 111.69 REMARK 500 GLU B 842 151.14 -48.98 REMARK 500 GLN B 846 -73.75 -40.84 REMARK 500 HIS B 855 122.47 13.21 REMARK 500 ARG B 857 94.18 95.40 REMARK 500 GLN B 875 10.72 -148.06 REMARK 500 LEU B 877 96.46 -47.78 REMARK 500 PRO B 882 -70.75 -41.49 REMARK 500 GLU B 883 -50.26 -2.65 REMARK 500 PHE B 891 30.67 -142.82 REMARK 500 TYR B 907 -1.43 -57.47 REMARK 500 PRO B 915 46.02 -82.34 REMARK 500 ALA B 925 81.14 -69.17 REMARK 500 ALA B 935 151.00 -44.37 REMARK 500 SER B 939 -39.79 -145.89 REMARK 500 LEU B 941 138.51 -34.42 REMARK 500 LYS B 943 141.08 -19.95 REMARK 500 ILE B 962 -136.33 -134.10 REMARK 500 LEU B 964 20.00 130.07 REMARK 500 ASP B 965 11.58 -152.49 REMARK 500 VAL B 967 107.69 69.41 REMARK 500 PRO B 970 83.32 -59.66 REMARK 500 THR B 973 108.45 -19.54 REMARK 500 ASP B 981 48.08 -75.83 REMARK 500 LEU B 985 -77.26 -26.60 REMARK 500 ASN B 987 132.35 -18.01 REMARK 500 LYS B1000 -66.97 -102.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 663 LYS A 664 148.96 REMARK 500 GLN A 694 LYS A 695 129.07 REMARK 500 LYS A 703 ARG A 704 147.86 REMARK 500 GLY A 745 MET A 746 57.75 REMARK 500 MET A 746 LYS A 747 145.13 REMARK 500 SER A 782 ASP A 783 148.68 REMARK 500 ASP A 784 SER A 785 30.23 REMARK 500 SER A 786 LYS A 787 123.77 REMARK 500 ASP A 805 ARG A 806 149.97 REMARK 500 ALA A 823 THR A 824 140.26 REMARK 500 ILE A 938 SER A 939 141.53 REMARK 500 ASP B 671 LEU B 672 149.52 REMARK 500 GLU B 680 SER B 681 145.77 REMARK 500 GLN B 718 ALA B 719 147.67 REMARK 500 ASP B 743 PHE B 744 -148.07 REMARK 500 LEU B 778 ARG B 779 149.88 REMARK 500 ASP B 783 ASP B 784 -147.64 REMARK 500 LYS B 787 ASP B 788 143.98 REMARK 500 LEU B 797 LYS B 798 -109.23 REMARK 500 LYS B 798 THR B 799 -148.31 REMARK 500 ALA B 828 TYR B 829 -134.56 REMARK 500 LEU B 854 HIS B 855 137.05 REMARK 500 PRO B 882 GLU B 883 140.21 REMARK 500 LEU B 920 LEU B 921 144.00 REMARK 500 LYS B 940 LEU B 941 134.30 REMARK 500 SER B 963 LEU B 964 -138.58 REMARK 500 LEU B 964 ASP B 965 79.28 REMARK 500 GLY B 966 VAL B 967 -31.44 REMARK 500 ASP B 981 THR B 982 -142.85 REMARK 500 LEU B 984 LEU B 985 145.95 REMARK 500 PHE B 1009 LYS B 1010 -139.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 744 0.14 SIDE_CHAIN REMARK 500 TYR A 794 0.09 SIDE_CHAIN REMARK 500 TYR A 986 0.11 SIDE_CHAIN REMARK 500 TYR B 775 0.11 SIDE_CHAIN REMARK 500 ARG B 779 0.13 SIDE_CHAIN REMARK 500 ARG B 806 0.08 SIDE_CHAIN REMARK 500 PHE B 837 0.09 SIDE_CHAIN REMARK 500 ARG B 841 0.12 SIDE_CHAIN REMARK 500 ARG B 857 0.16 SIDE_CHAIN REMARK 500 ARG B 865 0.11 SIDE_CHAIN REMARK 500 ARG B 878 0.11 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 5 DISTANCE = 5.65 ANGSTROMS REMARK 525 HOH A 31 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH B 72 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH B 75 DISTANCE = 5.33 ANGSTROMS REMARK 525 HOH A 52 DISTANCE = 7.19 ANGSTROMS REMARK 525 HOH A 67 DISTANCE = 5.45 ANGSTROMS REMARK 525 HOH B 114 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B 120 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 111 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A 112 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH B 126 DISTANCE = 5.57 ANGSTROMS REMARK 525 HOH B 135 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 138 DISTANCE = 7.49 ANGSTROMS REMARK 525 HOH A 148 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH B 183 DISTANCE = 5.59 ANGSTROMS REMARK 525 HOH A 168 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A 170 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A 176 DISTANCE = 5.69 ANGSTROMS REMARK 525 HOH A 191 DISTANCE = 7.07 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FRQ A 501 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FRQ B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UK0 RELATED DB: PDB REMARK 900 1UK0 CONTAINS THE SAME PROTEIN COMPLEXED WITH FR257517 DBREF 1UK1 A 662 1011 UNP P09874 PARP1_HUMAN 661 1010 DBREF 1UK1 B 662 1011 UNP P09874 PARP1_HUMAN 661 1010 SEQRES 1 A 350 LYS SER LYS LEU PRO LYS PRO VAL GLN ASP LEU ILE LYS SEQRES 2 A 350 MET ILE PHE ASP VAL GLU SER MET LYS LYS ALA MET VAL SEQRES 3 A 350 GLU TYR GLU ILE ASP LEU GLN LYS MET PRO LEU GLY LYS SEQRES 4 A 350 LEU SER LYS ARG GLN ILE GLN ALA ALA TYR SER ILE LEU SEQRES 5 A 350 SER GLU VAL GLN GLN ALA VAL SER GLN GLY SER SER ASP SEQRES 6 A 350 SER GLN ILE LEU ASP LEU SER ASN ARG PHE TYR THR LEU SEQRES 7 A 350 ILE PRO HIS ASP PHE GLY MET LYS LYS PRO PRO LEU LEU SEQRES 8 A 350 ASN ASN ALA ASP SER VAL GLN ALA LYS VAL GLU MET LEU SEQRES 9 A 350 ASP ASN LEU LEU ASP ILE GLU VAL ALA TYR SER LEU LEU SEQRES 10 A 350 ARG GLY GLY SER ASP ASP SER SER LYS ASP PRO ILE ASP SEQRES 11 A 350 VAL ASN TYR GLU LYS LEU LYS THR ASP ILE LYS VAL VAL SEQRES 12 A 350 ASP ARG ASP SER GLU GLU ALA GLU ILE ILE ARG LYS TYR SEQRES 13 A 350 VAL LYS ASN THR HIS ALA THR THR HIS ASN ALA TYR ASP SEQRES 14 A 350 LEU GLU VAL ILE ASP ILE PHE LYS ILE GLU ARG GLU GLY SEQRES 15 A 350 GLU CYS GLN ARG TYR LYS PRO PHE LYS GLN LEU HIS ASN SEQRES 16 A 350 ARG ARG LEU LEU TRP HIS GLY SER ARG THR THR ASN PHE SEQRES 17 A 350 ALA GLY ILE LEU SER GLN GLY LEU ARG ILE ALA PRO PRO SEQRES 18 A 350 GLU ALA PRO VAL THR GLY TYR MET PHE GLY LYS GLY ILE SEQRES 19 A 350 TYR PHE ALA ASP MET VAL SER LYS SER ALA ASN TYR CYS SEQRES 20 A 350 HIS THR SER GLN GLY ASP PRO ILE GLY LEU ILE LEU LEU SEQRES 21 A 350 GLY GLU VAL ALA LEU GLY ASN MET TYR GLU LEU LYS HIS SEQRES 22 A 350 ALA SER HIS ILE SER LYS LEU PRO LYS GLY LYS HIS SER SEQRES 23 A 350 VAL LYS GLY LEU GLY LYS THR THR PRO ASP PRO SER ALA SEQRES 24 A 350 ASN ILE SER LEU ASP GLY VAL ASP VAL PRO LEU GLY THR SEQRES 25 A 350 GLY ILE SER SER GLY VAL ASN ASP THR SER LEU LEU TYR SEQRES 26 A 350 ASN GLU TYR ILE VAL TYR ASP ILE ALA GLN VAL ASN LEU SEQRES 27 A 350 LYS TYR LEU LEU LYS LEU LYS PHE ASN PHE LYS THR SEQRES 1 B 350 LYS SER LYS LEU PRO LYS PRO VAL GLN ASP LEU ILE LYS SEQRES 2 B 350 MET ILE PHE ASP VAL GLU SER MET LYS LYS ALA MET VAL SEQRES 3 B 350 GLU TYR GLU ILE ASP LEU GLN LYS MET PRO LEU GLY LYS SEQRES 4 B 350 LEU SER LYS ARG GLN ILE GLN ALA ALA TYR SER ILE LEU SEQRES 5 B 350 SER GLU VAL GLN GLN ALA VAL SER GLN GLY SER SER ASP SEQRES 6 B 350 SER GLN ILE LEU ASP LEU SER ASN ARG PHE TYR THR LEU SEQRES 7 B 350 ILE PRO HIS ASP PHE GLY MET LYS LYS PRO PRO LEU LEU SEQRES 8 B 350 ASN ASN ALA ASP SER VAL GLN ALA LYS VAL GLU MET LEU SEQRES 9 B 350 ASP ASN LEU LEU ASP ILE GLU VAL ALA TYR SER LEU LEU SEQRES 10 B 350 ARG GLY GLY SER ASP ASP SER SER LYS ASP PRO ILE ASP SEQRES 11 B 350 VAL ASN TYR GLU LYS LEU LYS THR ASP ILE LYS VAL VAL SEQRES 12 B 350 ASP ARG ASP SER GLU GLU ALA GLU ILE ILE ARG LYS TYR SEQRES 13 B 350 VAL LYS ASN THR HIS ALA THR THR HIS ASN ALA TYR ASP SEQRES 14 B 350 LEU GLU VAL ILE ASP ILE PHE LYS ILE GLU ARG GLU GLY SEQRES 15 B 350 GLU CYS GLN ARG TYR LYS PRO PHE LYS GLN LEU HIS ASN SEQRES 16 B 350 ARG ARG LEU LEU TRP HIS GLY SER ARG THR THR ASN PHE SEQRES 17 B 350 ALA GLY ILE LEU SER GLN GLY LEU ARG ILE ALA PRO PRO SEQRES 18 B 350 GLU ALA PRO VAL THR GLY TYR MET PHE GLY LYS GLY ILE SEQRES 19 B 350 TYR PHE ALA ASP MET VAL SER LYS SER ALA ASN TYR CYS SEQRES 20 B 350 HIS THR SER GLN GLY ASP PRO ILE GLY LEU ILE LEU LEU SEQRES 21 B 350 GLY GLU VAL ALA LEU GLY ASN MET TYR GLU LEU LYS HIS SEQRES 22 B 350 ALA SER HIS ILE SER LYS LEU PRO LYS GLY LYS HIS SER SEQRES 23 B 350 VAL LYS GLY LEU GLY LYS THR THR PRO ASP PRO SER ALA SEQRES 24 B 350 ASN ILE SER LEU ASP GLY VAL ASP VAL PRO LEU GLY THR SEQRES 25 B 350 GLY ILE SER SER GLY VAL ASN ASP THR SER LEU LEU TYR SEQRES 26 B 350 ASN GLU TYR ILE VAL TYR ASP ILE ALA GLN VAL ASN LEU SEQRES 27 B 350 LYS TYR LEU LEU LYS LEU LYS PHE ASN PHE LYS THR HET FRQ A 501 29 HET FRQ B 502 29 HETNAM FRQ 5-FLUORO-1-[4-(4-PHENYL-3,6-DIHYDROPYRIDIN-1(2H)-YL) HETNAM 2 FRQ BUTYL]QUINAZOLINE-2,4(1H,3H)-DIONE FORMUL 3 FRQ 2(C23 H24 F N3 O2) FORMUL 5 HOH *191(H2 O) HELIX 1 1 PRO A 666 PHE A 677 1 12 HELIX 2 2 ASP A 678 GLU A 690 1 13 HELIX 3 3 SER A 702 GLN A 722 1 21 HELIX 4 4 SER A 725 ILE A 740 1 16 HELIX 5 5 ASN A 754 LEU A 778 1 25 HELIX 6 6 ASP A 788 LEU A 797 1 10 HELIX 7 7 SER A 808 HIS A 822 1 15 HELIX 8 8 GLY A 843 GLN A 853 1 11 HELIX 9 9 ARG A 865 THR A 867 5 3 HELIX 10 10 ASN A 868 GLY A 876 1 9 HELIX 11 11 PRO A 885 TYR A 889 5 5 HELIX 12 12 MET A 900 ASN A 906 1 7 HELIX 13 13 TYR A 907 HIS A 909 5 3 HELIX 14 14 PRO A 958 ASN A 961 5 4 HELIX 15 15 ASP A 993 ALA A 995 5 3 HELIX 16 16 PRO B 666 ASP B 678 1 13 HELIX 17 17 ASP B 678 TYR B 689 1 12 HELIX 18 18 PRO B 697 LEU B 701 5 5 HELIX 19 19 SER B 702 GLN B 722 1 21 HELIX 20 20 SER B 725 ILE B 740 1 16 HELIX 21 21 ASN B 754 LEU B 778 1 25 HELIX 22 22 ASP B 788 LEU B 797 1 10 HELIX 23 23 SER B 808 THR B 821 1 14 HELIX 24 24 ALA B 823 ASN B 827 5 5 HELIX 25 25 GLY B 843 GLN B 853 1 11 HELIX 26 26 ARG B 865 GLY B 876 1 12 HELIX 27 27 MET B 900 TYR B 907 1 8 HELIX 28 28 ASP B 957 ASN B 961 5 5 HELIX 29 29 ASP B 993 ALA B 995 5 3 SHEET 1 A 5 THR A 799 VAL A 803 0 SHEET 2 A 5 ASP A 830 ARG A 841 -1 O LYS A 838 N LYS A 802 SHEET 3 A 5 VAL A 997 ASN A1008 -1 O LEU A1002 N PHE A 837 SHEET 4 A 5 ILE A 916 ALA A 925 -1 N LEU A 921 O TYR A1001 SHEET 5 A 5 ARG A 857 GLY A 863 -1 N LEU A 860 O GLY A 922 SHEET 1 B 4 ILE A 895 ALA A 898 0 SHEET 2 B 4 GLU A 988 VAL A 991 -1 O TYR A 989 N PHE A 897 SHEET 3 B 4 SER A 947 GLY A 950 -1 N VAL A 948 O ILE A 990 SHEET 4 B 4 MET A 929 LEU A 932 1 N TYR A 930 O SER A 947 SHEET 1 C 3 GLY A 974 SER A 976 0 SHEET 2 C 3 GLY A 952 PRO A 956 -1 N THR A 955 O ILE A 975 SHEET 3 C 3 LEU A 984 TYR A 986 1 O LEU A 985 N THR A 954 SHEET 1 D 2 SER A 963 LEU A 964 0 SHEET 2 D 2 VAL A 967 ASP A 968 -1 O VAL A 967 N LEU A 964 SHEET 1 E 5 LYS B 802 VAL B 803 0 SHEET 2 E 5 VAL B 833 LYS B 838 -1 O LYS B 838 N LYS B 802 SHEET 3 E 5 VAL B 997 LYS B1006 -1 O LYS B1004 N ASP B 835 SHEET 4 E 5 ILE B 916 VAL B 924 -1 N GLU B 923 O ASN B 998 SHEET 5 E 5 ARG B 858 GLY B 863 -1 N ARG B 858 O VAL B 924 SHEET 1 F 4 ILE B 895 ALA B 898 0 SHEET 2 F 4 GLU B 988 VAL B 991 -1 O TYR B 989 N PHE B 897 SHEET 3 F 4 SER B 947 GLY B 950 -1 N VAL B 948 O ILE B 990 SHEET 4 F 4 MET B 929 LEU B 932 1 N TYR B 930 O SER B 947 SHEET 1 G 2 GLY B 952 THR B 954 0 SHEET 2 G 2 LEU B 984 TYR B 986 1 O LEU B 985 N THR B 954 CISPEP 1 PHE A 744 GLY A 745 0 -1.50 CISPEP 2 ALA A 828 TYR A 829 0 -12.48 CISPEP 3 MET B 746 LYS B 747 0 -23.43 CISPEP 4 GLY B 780 GLY B 781 0 15.99 CISPEP 5 ASN B 856 ARG B 857 0 14.60 CISPEP 6 LYS B 893 GLY B 894 0 13.97 CISPEP 7 GLN B 912 GLY B 913 0 13.49 CISPEP 8 GLY B 913 ASP B 914 0 -4.19 SITE 1 AC1 14 ASP A 766 LEU A 769 TRP A 861 HIS A 862 SITE 2 AC1 14 GLY A 863 ARG A 878 ILE A 879 ALA A 880 SITE 3 AC1 14 TYR A 889 PHE A 897 ALA A 898 SER A 904 SITE 4 AC1 14 TYR A 907 GLU A 988 SITE 1 AC2 14 ASP B 766 ASP B 770 TRP B 861 HIS B 862 SITE 2 AC2 14 GLY B 863 ILE B 879 TYR B 889 TYR B 896 SITE 3 AC2 14 PHE B 897 ALA B 898 LYS B 903 SER B 904 SITE 4 AC2 14 TYR B 907 GLU B 988 CRYST1 179.960 53.270 91.470 90.00 113.80 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005557 0.000000 0.002451 0.00000 SCALE2 0.000000 0.018772 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011949 0.00000