HEADER SIGNALING PROTEIN 22-JUL-04 1U3O TITLE SOLUTION STRUCTURE OF RAT KALIRIN N-TERMINAL SH3 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUNTINGTIN-ASSOCIATED PROTEIN-INTERACTING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 SYNONYM: DUO PROTEIN, KALIRIN, PAM COOH-TERMINAL INTERACTOR PROTEIN COMPND 6 10, P-CIP10; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 ORGAN: BRAIN; SOURCE 6 GENE: KALIRIN, HAPIP, DUO; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGEX6P KEYWDS SH3, CIS-PROLINE, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.R.SCHILLER,K.CHAKRABARTI,G.F.KING,N.I.SCHILLER,B.A.EIPPER, AUTHOR 2 M.W.MACIEJEWSKI REVDAT 4 02-MAR-22 1U3O 1 REMARK SEQADV REVDAT 3 24-FEB-09 1U3O 1 VERSN REVDAT 2 18-JUL-06 1U3O 1 JRNL REVDAT 1 26-JUL-05 1U3O 0 JRNL AUTH M.R.SCHILLER,K.CHAKRABARTI,G.F.KING,N.I.SCHILLER,B.A.EIPPER, JRNL AUTH 2 M.W.MACIEJEWSKI JRNL TITL REGULATION OF RHOGEF ACTIVITY BY INTRAMOLECULAR AND JRNL TITL 2 INTERMOLECULAR SH3 DOMAIN INTERACTIONS. JRNL REF J.BIOL.CHEM. V. 281 18774 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16644733 JRNL DOI 10.1074/JBC.M512482200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5, X-PLOR 3.851 REMARK 3 AUTHORS : GUNTERT, P., MUMENTHALER, C., AND WUTHRICH, K. REMARK 3 (DYANA), BRUNGER, A.T. (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE IS BASED ON A TOTAL OF REMARK 3 1017 RESTRAINTS, WITH 893 NOE-DERIVED DISTANCE CONSTRAINTS, 102 REMARK 3 DIHEDRAL ANGLE RESTRAINTS, AND 22 HYDROGEN BOND RESTRAINTS. REMARK 4 REMARK 4 1U3O COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000023204. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : 200 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4 MM U-15N PROTEIN, 50 MM REMARK 210 HEPES, 150 MM NACL, 1 MM REMARK 210 DITHIOTHEITOL, 92.5% H2O, 7.5% REMARK 210 D2O; 1 MM U-15N,13C PROTEIN, 50 REMARK 210 MM HEPES, 150 MM NACL, 1 MM REMARK 210 DITHIOTHEITOL, 92.5% H2O, 7.5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNHA; HNHB; 3D HN(COCA)CB; REMARK 210 3D_C(CO)NH-TOCSY; 3D_15N_ NOESY- REMARK 210 HSQC; 3D_13C_HSQC-NOESY; 3D REMARK 210 HNCACB; HC(CO)NH-TOCSY; HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 1.0.0, NMRPIPE 2.3, XEASY REMARK 210 1.4, TALOS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS AND REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 PRO A 6 REMARK 465 GLY A 7 REMARK 465 ILE A 8 REMARK 465 PRO A 9 REMARK 465 GLY A 10 REMARK 465 SER A 11 REMARK 465 THR A 12 REMARK 465 LEU A 13 REMARK 465 ARG A 81 REMARK 465 SER A 82 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 28 -175.61 -49.38 REMARK 500 1 ALA A 29 -34.22 177.40 REMARK 500 1 SER A 32 37.77 -92.19 REMARK 500 1 GLU A 46 -154.19 -126.39 REMARK 500 1 PRO A 65 170.27 -52.20 REMARK 500 1 HIS A 79 121.72 62.88 REMARK 500 2 ALA A 28 -177.23 -48.13 REMARK 500 2 ALA A 29 -29.55 170.97 REMARK 500 2 SER A 31 -80.31 -38.46 REMARK 500 2 SER A 32 44.58 -94.10 REMARK 500 2 GLU A 46 -154.83 -130.33 REMARK 500 2 PRO A 65 167.84 -48.52 REMARK 500 3 ALA A 28 -176.88 -49.14 REMARK 500 3 ALA A 29 -30.86 178.49 REMARK 500 3 SER A 31 -80.21 -35.75 REMARK 500 3 SER A 32 42.55 -88.78 REMARK 500 3 GLU A 46 -154.80 -132.42 REMARK 500 3 PRO A 48 59.88 -67.51 REMARK 500 3 PRO A 65 165.06 -44.03 REMARK 500 3 SER A 78 78.20 59.96 REMARK 500 4 ALA A 28 -176.43 -48.58 REMARK 500 4 ALA A 29 -32.05 170.55 REMARK 500 4 SER A 32 37.71 -96.94 REMARK 500 4 PRO A 48 76.53 -57.18 REMARK 500 4 PRO A 65 164.23 -44.05 REMARK 500 4 ILE A 77 -41.70 -133.00 REMARK 500 4 SER A 78 98.93 59.54 REMARK 500 5 ALA A 28 -176.01 -49.35 REMARK 500 5 ALA A 29 -32.01 173.61 REMARK 500 5 SER A 32 42.06 -92.19 REMARK 500 5 GLU A 46 -156.03 -131.83 REMARK 500 5 PRO A 48 73.86 -62.02 REMARK 500 5 PRO A 65 160.91 -44.21 REMARK 500 5 SER A 78 39.63 -151.62 REMARK 500 5 HIS A 79 -67.27 -167.39 REMARK 500 6 ALA A 28 -176.05 -50.05 REMARK 500 6 ALA A 29 -30.10 170.34 REMARK 500 6 SER A 31 -76.47 -41.60 REMARK 500 6 SER A 32 44.15 -92.26 REMARK 500 6 GLU A 46 -154.19 -127.66 REMARK 500 6 PRO A 65 167.09 -45.66 REMARK 500 6 HIS A 79 85.86 60.17 REMARK 500 7 ALA A 28 -176.25 -49.29 REMARK 500 7 ALA A 29 -30.04 169.94 REMARK 500 7 SER A 31 -76.33 -41.80 REMARK 500 7 SER A 32 43.14 -91.94 REMARK 500 7 PRO A 48 63.49 -66.21 REMARK 500 7 PRO A 65 165.22 -48.89 REMARK 500 7 SER A 78 96.36 60.63 REMARK 500 8 ALA A 28 -177.60 -48.50 REMARK 500 REMARK 500 THIS ENTRY HAS 138 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1U3O A 13 82 UNP P97924 HAPIP_RAT 1637 1706 SEQADV 1U3O GLY A 1 UNP P97924 CLONING ARTIFACT SEQADV 1U3O PRO A 2 UNP P97924 CLONING ARTIFACT SEQADV 1U3O LEU A 3 UNP P97924 CLONING ARTIFACT SEQADV 1U3O GLY A 4 UNP P97924 CLONING ARTIFACT SEQADV 1U3O SER A 5 UNP P97924 CLONING ARTIFACT SEQADV 1U3O PRO A 6 UNP P97924 CLONING ARTIFACT SEQADV 1U3O GLY A 7 UNP P97924 CLONING ARTIFACT SEQADV 1U3O ILE A 8 UNP P97924 CLONING ARTIFACT SEQADV 1U3O PRO A 9 UNP P97924 CLONING ARTIFACT SEQADV 1U3O GLY A 10 UNP P97924 CLONING ARTIFACT SEQADV 1U3O SER A 11 UNP P97924 CLONING ARTIFACT SEQADV 1U3O THR A 12 UNP P97924 CLONING ARTIFACT SEQRES 1 A 82 GLY PRO LEU GLY SER PRO GLY ILE PRO GLY SER THR LEU SEQRES 2 A 82 SER GLY GLY CYS GLU LEU THR VAL VAL LEU GLN ASP PHE SEQRES 3 A 82 SER ALA ALA HIS SER SER GLU LEU SER ILE GLN VAL GLY SEQRES 4 A 82 GLN THR VAL GLU LEU LEU GLU ARG PRO SER GLU ARG PRO SEQRES 5 A 82 GLY TRP CYS LEU VAL ARG THR THR GLU ARG SER PRO PRO SEQRES 6 A 82 GLN GLU GLY LEU VAL PRO SER SER THR LEU CYS ILE SER SEQRES 7 A 82 HIS SER ARG SER HELIX 1 1 SER A 73 LEU A 75 5 3 SHEET 1 A 2 GLU A 18 VAL A 21 0 SHEET 2 A 2 THR A 41 LEU A 44 -1 O VAL A 42 N THR A 20 SHEET 1 B 2 TRP A 54 THR A 59 0 SHEET 2 B 2 GLN A 66 PRO A 71 -1 O VAL A 70 N CYS A 55 CISPEP 1 SER A 63 PRO A 64 1 0.15 CISPEP 2 SER A 63 PRO A 64 2 0.12 CISPEP 3 SER A 63 PRO A 64 3 0.17 CISPEP 4 SER A 63 PRO A 64 4 0.11 CISPEP 5 SER A 63 PRO A 64 5 -0.03 CISPEP 6 SER A 63 PRO A 64 6 0.01 CISPEP 7 SER A 63 PRO A 64 7 0.08 CISPEP 8 SER A 63 PRO A 64 8 0.02 CISPEP 9 SER A 63 PRO A 64 9 0.22 CISPEP 10 SER A 63 PRO A 64 10 0.36 CISPEP 11 SER A 63 PRO A 64 11 0.37 CISPEP 12 SER A 63 PRO A 64 12 0.01 CISPEP 13 SER A 63 PRO A 64 13 0.21 CISPEP 14 SER A 63 PRO A 64 14 0.18 CISPEP 15 SER A 63 PRO A 64 15 0.28 CISPEP 16 SER A 63 PRO A 64 16 0.05 CISPEP 17 SER A 63 PRO A 64 17 -0.09 CISPEP 18 SER A 63 PRO A 64 18 -0.02 CISPEP 19 SER A 63 PRO A 64 19 0.10 CISPEP 20 SER A 63 PRO A 64 20 0.11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20