HEADER RNA BINDING PROTEIN 04-MAR-04 1SJR TITLE NMR STRUCTURE OF RRM2 FROM HUMAN POLYPYRIMIDINE TRACT BINDING PROTEIN TITLE 2 ISOFORM 1 (PTB1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYPYRIMIDINE TRACT-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PTB, HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN I, HNRNP I, 57 COMPND 5 KDA RNA-BINDING PROTEIN PPTB-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTBP1, PTB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SG13009 (QIAGEN); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE9 KEYWDS EXTENDED BABBAB MOTIF, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 16 MDLTYP MINIMIZED AVERAGE AUTHOR P.J.SIMPSON,T.P.MONIE,A.SZENDROI,N.DAVYDOVA,J.K.TYZACK,M.R.CONTE, AUTHOR 2 C.M.READ,P.D.CARY,D.I.SVERGUN,P.V.KONAREV,M.V.PETOUKHOV,S.CURRY, AUTHOR 3 S.J.MATTHEWS REVDAT 3 02-MAR-22 1SJR 1 REMARK SEQADV REVDAT 2 24-FEB-09 1SJR 1 VERSN REVDAT 1 14-SEP-04 1SJR 0 JRNL AUTH P.J.SIMPSON,T.P.MONIE,A.SZENDROI,N.DAVYDOVA,J.K.TYZACK, JRNL AUTH 2 M.R.CONTE,C.M.READ,P.D.CARY,D.I.SVERGUN,P.V.KONAREV,S.CURRY, JRNL AUTH 3 S.J.MATTHEWS JRNL TITL STRUCTURE AND RNA INTERACTIONS OF THE N-TERMINAL RRM DOMAINS JRNL TITL 2 OF PTB JRNL REF STRUCTURE V. 12 1631 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15341728 JRNL DOI 10.1016/J.STR.2004.07.008 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.1, X-PLOR 3.851 REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), BRUNGER, A.T. (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SJR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000021770. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.3 M REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.25 MM PTB1-2, U-15N, 13C, 50 REMARK 210 MM NA PHOSPHATE BUFFER, 100 MM REMARK 210 NACL, 10 MM DTT, 2 MM NAN3,10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1, NMRVIEW 4.1.3, X-PLOR REMARK 210 3.851 REMARK 210 METHOD USED : HYBRID DISTANCE REMARK 210 GEOMETRY/SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-16 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 GLY A 8 REMARK 465 SER A 9 REMARK 465 ALA A 10 REMARK 465 GLN A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 LEU A 14 REMARK 465 GLN A 15 REMARK 465 ALA A 16 REMARK 465 VAL A 17 REMARK 465 ASN A 18 REMARK 465 SER A 19 REMARK 465 VAL A 20 REMARK 465 GLN A 21 REMARK 465 SER A 22 REMARK 465 GLY A 23 REMARK 465 ASN A 24 REMARK 465 LEU A 25 REMARK 465 ALA A 26 REMARK 465 LEU A 27 REMARK 465 ALA A 28 REMARK 465 ALA A 29 REMARK 465 SER A 30 REMARK 465 ALA A 31 REMARK 465 ALA A 32 REMARK 465 ALA A 33 REMARK 465 VAL A 34 REMARK 465 ASP A 35 REMARK 465 ALA A 36 REMARK 465 GLY A 37 REMARK 465 MET A 38 REMARK 465 ALA A 39 REMARK 465 SER A 148 REMARK 465 GLN A 149 REMARK 465 PRO A 150 REMARK 465 SER A 151 REMARK 465 LEU A 152 REMARK 465 ASP A 153 REMARK 465 GLN A 154 REMARK 465 THR A 155 REMARK 465 MET A 156 REMARK 465 ALA A 157 REMARK 465 ALA A 158 REMARK 465 ALA A 159 REMARK 465 PHE A 160 REMARK 465 GLY A 161 REMARK 465 LEU A 162 REMARK 465 SER A 163 REMARK 465 VAL A 164 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 67 HH TYR A 91 1.38 REMARK 500 H ASN A 131 O PRO A 144 1.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 41 65.10 -68.39 REMARK 500 1 GLN A 43 57.03 36.38 REMARK 500 1 ASN A 53 77.26 70.95 REMARK 500 1 PHE A 55 -75.08 -142.21 REMARK 500 1 ASN A 83 40.87 85.62 REMARK 500 1 TYR A 110 -64.82 -129.39 REMARK 500 1 ASN A 111 -66.20 -147.15 REMARK 500 1 ALA A 112 41.59 -148.24 REMARK 500 1 CYS A 114 33.12 73.40 REMARK 500 1 THR A 115 124.26 -36.20 REMARK 500 1 SER A 121 171.14 -50.96 REMARK 500 1 THR A 124 19.11 55.74 REMARK 500 1 LYS A 129 24.94 -143.48 REMARK 500 1 ASN A 132 -91.21 -146.02 REMARK 500 1 ASP A 133 -41.34 -140.81 REMARK 500 1 ARG A 136 108.58 -165.54 REMARK 500 1 ASP A 142 30.32 -89.02 REMARK 500 2 ALA A 41 91.47 -179.86 REMARK 500 2 GLN A 43 77.10 81.49 REMARK 500 2 ASN A 53 75.05 37.16 REMARK 500 2 PHE A 55 -48.91 -155.06 REMARK 500 2 ASN A 82 -19.03 86.94 REMARK 500 2 ASN A 83 41.00 158.93 REMARK 500 2 ASN A 111 -65.20 66.69 REMARK 500 2 ALA A 112 48.79 -165.14 REMARK 500 2 CYS A 114 33.68 72.60 REMARK 500 2 THR A 115 107.72 -36.24 REMARK 500 2 THR A 124 19.36 55.16 REMARK 500 2 SER A 125 167.66 158.86 REMARK 500 2 ASN A 127 109.40 -59.35 REMARK 500 2 LYS A 129 40.19 -143.25 REMARK 500 2 ASN A 132 -90.97 -170.46 REMARK 500 2 ASP A 133 -40.68 -138.80 REMARK 500 2 TYR A 138 70.98 -110.78 REMARK 500 2 THR A 139 -35.58 -176.97 REMARK 500 3 ALA A 41 44.85 -165.98 REMARK 500 3 ASN A 53 80.50 64.96 REMARK 500 3 PHE A 55 -59.00 -148.50 REMARK 500 3 LYS A 81 -95.16 -72.08 REMARK 500 3 ASN A 82 38.97 -91.64 REMARK 500 3 ASN A 83 44.24 86.61 REMARK 500 3 TYR A 110 -77.68 -112.52 REMARK 500 3 ASN A 111 87.72 -152.13 REMARK 500 3 THR A 115 136.61 -38.96 REMARK 500 3 SER A 121 170.49 -50.75 REMARK 500 3 THR A 124 18.24 56.84 REMARK 500 3 ASN A 127 60.64 -102.79 REMARK 500 3 LYS A 129 15.44 -142.19 REMARK 500 3 ASN A 132 -28.31 86.75 REMARK 500 3 ASP A 142 30.98 -89.79 REMARK 500 REMARK 500 THIS ENTRY HAS 256 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SJQ RELATED DB: PDB REMARK 900 NMR STRUCTURE OF RRM1 FROM HUMAN POLYPYRIMIDINE TRACT BINDING REMARK 900 PROTEIN ISOFORM 1 (PTB1) DBREF 1SJR A 10 164 UNP P26599 PTBP1_HUMAN 147 301 SEQADV 1SJR MET A 1 UNP P26599 INITIATING METHIONINE SEQADV 1SJR HIS A 2 UNP P26599 EXPRESSION TAG SEQADV 1SJR HIS A 3 UNP P26599 EXPRESSION TAG SEQADV 1SJR HIS A 4 UNP P26599 EXPRESSION TAG SEQADV 1SJR HIS A 5 UNP P26599 EXPRESSION TAG SEQADV 1SJR HIS A 6 UNP P26599 EXPRESSION TAG SEQADV 1SJR HIS A 7 UNP P26599 EXPRESSION TAG SEQADV 1SJR GLY A 8 UNP P26599 EXPRESSION TAG SEQADV 1SJR SER A 9 UNP P26599 EXPRESSION TAG SEQRES 1 A 164 MET HIS HIS HIS HIS HIS HIS GLY SER ALA GLN ALA ALA SEQRES 2 A 164 LEU GLN ALA VAL ASN SER VAL GLN SER GLY ASN LEU ALA SEQRES 3 A 164 LEU ALA ALA SER ALA ALA ALA VAL ASP ALA GLY MET ALA SEQRES 4 A 164 MET ALA GLY GLN SER PRO VAL LEU ARG ILE ILE VAL GLU SEQRES 5 A 164 ASN LEU PHE TYR PRO VAL THR LEU ASP VAL LEU HIS GLN SEQRES 6 A 164 ILE PHE SER LYS PHE GLY THR VAL LEU LYS ILE ILE THR SEQRES 7 A 164 PHE THR LYS ASN ASN GLN PHE GLN ALA LEU LEU GLN TYR SEQRES 8 A 164 ALA ASP PRO VAL SER ALA GLN HIS ALA LYS LEU SER LEU SEQRES 9 A 164 ASP GLY GLN ASN ILE TYR ASN ALA CYS CYS THR LEU ARG SEQRES 10 A 164 ILE ASP PHE SER LYS LEU THR SER LEU ASN VAL LYS TYR SEQRES 11 A 164 ASN ASN ASP LYS SER ARG ASP TYR THR ARG PRO ASP LEU SEQRES 12 A 164 PRO SER GLY ASP SER GLN PRO SER LEU ASP GLN THR MET SEQRES 13 A 164 ALA ALA ALA PHE GLY LEU SER VAL HELIX 1 1 THR A 59 GLY A 71 1 13 HELIX 2 2 ASP A 93 LEU A 104 1 12 SHEET 1 A 5 LEU A 116 PHE A 120 0 SHEET 2 A 5 VAL A 46 VAL A 51 -1 N ARG A 48 O ASP A 119 SHEET 3 A 5 PHE A 85 TYR A 91 -1 O ALA A 87 N ILE A 49 SHEET 4 A 5 VAL A 73 THR A 80 -1 N ILE A 77 O LEU A 88 SHEET 5 A 5 SER A 135 ASP A 137 -1 O ARG A 136 N ILE A 76 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16