HEADER DNA BINDING PROTEIN 19-DEC-91 1REA TITLE STRUCTURE OF THE RECA PROTEIN-ADP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: REC A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562 KEYWDS SELF-CLEAVAGE STIMULATION, HOMOLOGOUS RECOMBINATION, DNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION MDLTYP CA ATOMS ONLY, CHAIN A AUTHOR R.M.STORY,T.A.STEITZ REVDAT 4 09-MAY-12 1REA 1 COMPND VERSN REVDAT 3 24-FEB-09 1REA 1 VERSN REVDAT 2 23-JUN-00 1REA 1 HEADER COMPND KEYWDS EXPDTA REVDAT 1 31-OCT-93 1REA 0 JRNL AUTH R.M.STORY,T.A.STEITZ JRNL TITL STRUCTURE OF THE RECA PROTEIN-ADP COMPLEX. JRNL REF NATURE V. 355 374 1992 JRNL REFN ISSN 0028-0836 JRNL PMID 1731253 JRNL DOI 10.1038/355374A0 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.M.STORY,I.T.WEBER,T.A.STEITZ REMARK 1 TITL THE STRUCTURE OF THE E. COLI RECA PROTEIN MONOMER AND REMARK 1 TITL 2 POLYMER REMARK 1 REF NATURE V. 355 318 1992 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.M.STORY,I.T.WEBER,T.A.STEITZ REMARK 1 TITL THE STRUCTURE OF THE E. COLI RECA PROTEIN MONOMER AND REMARK 1 TITL 2 POLYMER: ERRATUM REMARK 1 REF NATURE V. 355 567 1992 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 2.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 304 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 3.10 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1REA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 2.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.70000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.40000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.55000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 69.25000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.85000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ILE A 2 REMARK 465 GLY A 157 REMARK 465 GLU A 158 REMARK 465 ILE A 159 REMARK 465 GLY A 160 REMARK 465 ASP A 161 REMARK 465 SER A 162 REMARK 465 HIS A 163 REMARK 465 MET A 164 REMARK 465 ARG A 196 REMARK 465 MET A 197 REMARK 465 LYS A 198 REMARK 465 ILE A 199 REMARK 465 GLY A 200 REMARK 465 VAL A 201 REMARK 465 MET A 202 REMARK 465 PHE A 203 REMARK 465 GLY A 204 REMARK 465 ASN A 205 REMARK 465 PRO A 206 REMARK 465 GLU A 207 REMARK 465 THR A 208 REMARK 465 THR A 209 REMARK 465 SER A 329 REMARK 465 ASN A 330 REMARK 465 PRO A 331 REMARK 465 ASN A 332 REMARK 465 SER A 333 REMARK 465 THR A 334 REMARK 465 PRO A 335 REMARK 465 ASP A 336 REMARK 465 PHE A 337 REMARK 465 SER A 338 REMARK 465 VAL A 339 REMARK 465 ASP A 340 REMARK 465 ASP A 341 REMARK 465 SER A 342 REMARK 465 GLU A 343 REMARK 465 GLY A 344 REMARK 465 VAL A 345 REMARK 465 ALA A 346 REMARK 465 GLU A 347 REMARK 465 THR A 348 REMARK 465 ASN A 349 REMARK 465 GLU A 350 REMARK 465 ASP A 351 REMARK 465 PHE A 352 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 500 DBREF 1REA A 1 352 UNP P0A7G6 RECA_ECOLI 1 352 SEQRES 1 A 352 ALA ILE ASP GLU ASN LYS GLN LYS ALA LEU ALA ALA ALA SEQRES 2 A 352 LEU GLY GLN ILE GLU LYS GLN PHE GLY LYS GLY SER ILE SEQRES 3 A 352 MET ARG LEU GLY GLU ASP ARG SER MET ASP VAL GLU THR SEQRES 4 A 352 ILE SER THR GLY SER LEU SER LEU ASP ILE ALA LEU GLY SEQRES 5 A 352 ALA GLY GLY LEU PRO MET GLY ARG ILE VAL GLU ILE TYR SEQRES 6 A 352 GLY PRO GLU SER SER GLY LYS THR THR LEU THR LEU GLN SEQRES 7 A 352 VAL ILE ALA ALA ALA GLN ARG GLU GLY LYS THR CYS ALA SEQRES 8 A 352 PHE ILE ASP ALA GLU HIS ALA LEU ASP PRO ILE TYR ALA SEQRES 9 A 352 ARG LYS LEU GLY VAL ASP ILE ASP ASN LEU LEU CYS SER SEQRES 10 A 352 GLN PRO ASP THR GLY GLU GLN ALA LEU GLU ILE CYS ASP SEQRES 11 A 352 ALA LEU ALA ARG SER GLY ALA VAL ASP VAL ILE VAL VAL SEQRES 12 A 352 ASP SER VAL ALA ALA LEU THR PRO LYS ALA GLU ILE GLU SEQRES 13 A 352 GLY GLU ILE GLY ASP SER HIS MET GLY LEU ALA ALA ARG SEQRES 14 A 352 MET MET SER GLN ALA MET ARG LYS LEU ALA GLY ASN LEU SEQRES 15 A 352 LYS GLN SER ASN THR LEU LEU ILE PHE ILE ASN GLN ILE SEQRES 16 A 352 ARG MET LYS ILE GLY VAL MET PHE GLY ASN PRO GLU THR SEQRES 17 A 352 THR THR GLY GLY ASN ALA LEU LYS PHE TYR ALA SER VAL SEQRES 18 A 352 ARG LEU ASP ILE ARG ARG ILE GLY ALA VAL LYS GLU GLY SEQRES 19 A 352 GLU ASN VAL VAL GLY SER GLU THR ARG VAL LYS VAL VAL SEQRES 20 A 352 LYS ASN LYS ILE ALA ALA PRO PHE LYS GLN ALA GLU PHE SEQRES 21 A 352 GLN ILE LEU TYR GLY GLU GLY ILE ASN PHE TYR GLY GLU SEQRES 22 A 352 LEU VAL ASP LEU GLY VAL LYS GLU LYS LEU ILE GLU LYS SEQRES 23 A 352 ALA GLY ALA TRP TYR SER TYR LYS GLY GLU LYS ILE GLY SEQRES 24 A 352 GLN GLY LYS ALA ASN ALA THR ALA TRP LEU LYS ASP ASN SEQRES 25 A 352 PRO GLU THR ALA LYS GLU ILE GLU LYS LYS VAL ARG GLU SEQRES 26 A 352 LEU LEU LEU SER ASN PRO ASN SER THR PRO ASP PHE SER SEQRES 27 A 352 VAL ASP ASP SER GLU GLY VAL ALA GLU THR ASN GLU ASP SEQRES 28 A 352 PHE HET ADP A 500 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 ADP C10 H15 N5 O10 P2 SITE 1 AC1 4 SER A 69 GLY A 71 THR A 73 TYR A 264 CRYST1 102.200 102.200 83.100 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009785 0.005649 0.000000 0.00000 SCALE2 0.000000 0.011298 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012034 0.00000