HEADER RIBOSOME INHIBITOR, HYDROLASE 25-JUN-02 1M2T TITLE MISTLETOE LECTIN I FROM VISCUM ALBUM IN COMPLEX WITH ADENINE TITLE 2 MONOPHOSPHATE. CRYSTAL STRUCTURE AT 1.9 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MISTLETOE LECTIN I A CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-GALACTOSIDE SPECIFIC LECTIN I A CHAIN; MLA; ML-I A; COMPND 5 RRNA N-GLYCOSIDASE; COMPND 6 EC: 3.2.2.22; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MISTLETOE LECTIN I B CHAIN; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: LECTIN CHAIN A ISOFORM 1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VISCUM ALBUM; SOURCE 3 ORGANISM_COMMON: EUROPEAN MISTLETOE; SOURCE 4 ORGANISM_TAXID: 3972; SOURCE 5 ORGAN: LEAF; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: VISCUM ALBUM; SOURCE 8 ORGANISM_COMMON: EUROPEAN MISTLETOE; SOURCE 9 ORGANISM_TAXID: 3972; SOURCE 10 ORGAN: LEAF KEYWDS RIBOSOME INACTIVATION, RIBOSOME INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.KRAUSPENHAAR,W.RYPNIEWSKI,N.KALKURA,K.MOORE,L.DELUCAS,S.STOEVA, AUTHOR 2 A.MIKHAILOV,W.VOELTER,C.BETZEL REVDAT 4 29-JUL-20 1M2T 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE REVDAT 3 13-JUL-11 1M2T 1 VERSN REVDAT 2 24-FEB-09 1M2T 1 VERSN REVDAT 1 24-JUN-03 1M2T 0 JRNL AUTH R.KRAUSPENHAAR,W.RYPNIEWSKI,N.KALKURA,K.MOORE,L.DELUCAS, JRNL AUTH 2 S.STOEVA,A.MIKHAILOV,W.VOELTER,C.H.BETZEL JRNL TITL CRYSTALLISATION UNDER MICROGRAVITY OF MISTLETOE LECTIN I JRNL TITL 2 FROM VISCUM ALBUM WITH ADENINE MONOPHOSPHATE AND THE CRYSTAL JRNL TITL 3 STRUCTURE AT 1.9 A RESOLUTION. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 58 1704 2002 JRNL REFN ISSN 0907-4449 JRNL PMID 12351890 JRNL DOI 10.1107/S0907444902014270 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 83270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4159 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3907 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 162 REMARK 3 SOLVENT ATOMS : 503 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.012 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.029 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1M2T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-02. REMARK 100 THE DEPOSITION ID IS D_1000016526. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 2.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8459 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83270 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 38.00 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.76400 REMARK 200 R SYM FOR SHELL (I) : 0.76400 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: UNPUBLISHED STRUCTURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, PH 2.5, VAPOR REMARK 280 DIFFUSION UNDER MICROGRAVITY AT 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 206.54667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 103.27333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 154.91000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.63667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 258.18333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 206.54667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 103.27333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 51.63667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 154.91000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 258.18333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 249 REMARK 465 ARG A 250 REMARK 465 PRO A 251 REMARK 465 SER A 252 REMARK 465 SER A 253 REMARK 465 SER A 254 REMARK 465 ASP B 248 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 5 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 768 O HOH B 768 12554 1.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 3 CD - NE - CZ ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 3 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 9 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG A 25 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 52 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 52 NE - CZ - NH2 ANGL. DEV. = 5.2 DEGREES REMARK 500 LEU A 118 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 ARG A 125 NE - CZ - NH1 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 234 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 333 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG B 333 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 LYS B 362 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 ASN B 383 CB - CG - OD1 ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG B 420 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 36 3.87 80.94 REMARK 500 SER A 43 43.26 -92.54 REMARK 500 ILE A 163 -74.43 -116.46 REMARK 500 ALA A 223 -61.02 -18.09 REMARK 500 PRO A 224 46.42 -92.23 REMARK 500 VAL A 226 -169.79 -106.33 REMARK 500 CYS B 252 61.07 -157.65 REMARK 500 ALA B 254 7.20 50.77 REMARK 500 SER B 447 10.09 80.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 7 11.95 REMARK 500 SER A 86 14.57 REMARK 500 SER B 255 11.44 REMARK 500 LYS B 288 11.95 REMARK 500 ASN B 343 -11.95 REMARK 500 ASN B 352 10.69 REMARK 500 ASP B 384 -10.48 REMARK 500 CYS B 438 -10.67 REMARK 500 LEU B 479 -12.07 REMARK 500 ASN B 487 -11.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 500 REMARK 610 FUC A 501 REMARK 610 NAG A 502 REMARK 610 NAG B 600 REMARK 610 FUC B 601 REMARK 610 NAG B 602 REMARK 610 NAG B 604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2MLL RELATED DB: PDB REMARK 900 2.7 A RESOLUTION DBREF 1M2T A 1 254 UNP P81446 ML1_VISAL 1 254 DBREF 1M2T B 248 510 UNP P81830 MLB1_VISAL 1 264 SEQADV 1M2T THR A 8 UNP P81446 VAL 8 CONFLICT SEQADV 1M2T ASP A 9 UNP P81446 THR 9 CONFLICT SEQADV 1M2T GLN A 10 UNP P81446 HIS 10 CONFLICT SEQADV 1M2T ALA A 15 UNP P81446 GLU 15 CONFLICT SEQADV 1M2T SER A 19 UNP P81446 ARG 19 CONFLICT SEQADV 1M2T VAL A 23 UNP P81446 LEU 23 CONFLICT SEQADV 1M2T ASN A 36 UNP P81446 GLU 36 CONFLICT SEQADV 1M2T VAL A 45 UNP P81446 ILE 45 CONFLICT SEQADV 1M2T GLU A 49 UNP P81446 ASP 49 CONFLICT SEQADV 1M2T GLY A 50 UNP P81446 ALA 50 CONFLICT SEQADV 1M2T ALA A 61 UNP P81446 GLN 61 CONFLICT SEQADV 1M2T GLY A 63 UNP P81446 GLN 63 CONFLICT SEQADV 1M2T THR A 65 UNP P81446 SER 65 CONFLICT SEQADV 1M2T ILE A 66 UNP P81446 VAL 66 CONFLICT SEQADV 1M2T LEU A 75 UNP P81446 ALA 75 CONFLICT SEQADV 1M2T GLU A 81 UNP P81446 GLN 81 CONFLICT SEQADV 1M2T ASN A 84 UNP P81446 ASP 84 CONFLICT SEQADV 1M2T SER A 90 UNP P81446 ARG 90 CONFLICT SEQADV 1M2T ALA A 94 UNP P81446 ARG 94 CONFLICT SEQADV 1M2T GLN A 99 UNP P81446 HIS 99 CONFLICT SEQADV 1M2T ASP A 100 UNP P81446 LEU 100 CONFLICT SEQADV 1M2T SER A 102 UNP P81446 THR 102 CONFLICT SEQADV 1M2T SER A 106 UNP P81446 ARG 106 CONFLICT SEQADV 1M2T GLN A 109 UNP P81446 LEU 109 CONFLICT SEQADV 1M2T GLN A 148 UNP P81446 SER 148 CONFLICT SEQADV 1M2T LYS A 150 UNP P81446 ARG 150 CONFLICT SEQADV 1M2T ALA A 176 UNP P81446 TYR 176 CONFLICT SEQADV 1M2T ALA A 219 UNP P81446 ARG 219 CONFLICT SEQADV 1M2T ALA A 223 UNP P81446 PRO 223 CONFLICT SEQADV 1M2T VAL A 226 UNP P81446 ASN 226 CONFLICT SEQADV 1M2T ILE A 227 UNP P81446 PHE 227 CONFLICT SEQADV 1M2T ILE A 233 UNP P81446 VAL 233 CONFLICT SEQADV 1M2T ALA B 249 UNP P81830 ASP 2 CONFLICT SEQADV 1M2T THR B 253 UNP P81830 SER 6 CONFLICT SEQADV 1M2T ILE B 258 UNP P81830 THR 11 CONFLICT SEQADV 1M2T THR B 268 UNP P81830 ARG 21 CONFLICT SEQADV 1M2T LYS B 301 UNP P81830 ARG 54 CONFLICT SEQADV 1M2T GLY B 342 UNP P81830 ASP 95 CONFLICT SEQADV 1M2T THR B 390 UNP P81830 VAL 143 CONFLICT SEQADV 1M2T ALA B 403 UNP P81830 ASN 156 CONFLICT SEQADV 1M2T TYR B 408 UNP P81830 TRP 161 CONFLICT SEQADV 1M2T THR B 413 UNP P81830 ASP 166 CONFLICT SEQADV 1M2T ALA B 414 UNP P81830 SER 167 CONFLICT SEQADV 1M2T GLY B 415 UNP P81830 SER 168 CONFLICT SEQADV 1M2T GLU B 417 UNP P81830 LYS 170 CONFLICT SEQADV 1M2T B UNP P81830 GLY 173 DELETION SEQADV 1M2T ARG B 420 UNP P81830 LYS 174 CONFLICT SEQADV 1M2T LEU B 434 UNP P81830 ASN 188 CONFLICT SEQADV 1M2T SER B 436 UNP P81830 ASP 190 CONFLICT SEQADV 1M2T ASN B 441 UNP P81830 SER 195 CONFLICT SEQADV 1M2T ILE B 446 UNP P81830 VAL 200 CONFLICT SEQADV 1M2T ALA B 457 UNP P81830 INSERTION SEQADV 1M2T SER B 459 UNP P81830 ALA 212 CONFLICT SEQADV 1M2T B UNP P81830 SER 215 DELETION SEQADV 1M2T SER B 489 UNP P81830 LYS 243 CONFLICT SEQADV 1M2T GLN B 491 UNP P81830 ARG 245 CONFLICT SEQADV 1M2T ASN B 501 UNP P81830 LYS 255 CONFLICT SEQADV 1M2T PRO B 510 UNP P81830 PHE 264 CONFLICT SEQRES 1 A 254 TYR GLU ARG LEU ARG LEU ARG THR ASP GLN GLN THR THR SEQRES 2 A 254 GLY ALA GLU TYR PHE SER PHE ILE THR VAL LEU ARG ASP SEQRES 3 A 254 TYR VAL SER SER GLY SER PHE SER ASN ASN ILE PRO LEU SEQRES 4 A 254 LEU ARG GLN SER THR VAL PRO VAL SER GLU GLY GLN ARG SEQRES 5 A 254 PHE VAL LEU VAL GLU LEU THR ASN ALA GLY GLY ASP THR SEQRES 6 A 254 ILE THR ALA ALA ILE ASP VAL THR ASN LEU TYR VAL VAL SEQRES 7 A 254 ALA TYR GLU ALA GLY ASN GLN SER TYR PHE LEU SER ASP SEQRES 8 A 254 ALA PRO ALA GLY ALA GLU THR GLN ASP PHE SER GLY THR SEQRES 9 A 254 THR SER SER SER GLN PRO PHE ASN GLY SER TYR PRO ASP SEQRES 10 A 254 LEU GLU ARG TYR ALA GLY HIS ARG ASP GLN ILE PRO LEU SEQRES 11 A 254 GLY ILE ASP GLN LEU ILE GLN SER VAL THR ALA LEU ARG SEQRES 12 A 254 PHE PRO GLY GLY GLN THR LYS THR GLN ALA ARG SER ILE SEQRES 13 A 254 LEU ILE LEU ILE GLN MET ILE SER GLU ALA ALA ARG PHE SEQRES 14 A 254 ASN PRO ILE LEU TRP ARG ALA ARG GLN TYR ILE ASN SER SEQRES 15 A 254 GLY ALA SER PHE LEU PRO ASP VAL TYR MET LEU GLU LEU SEQRES 16 A 254 GLU THR SER TRP GLY GLN GLN SER THR GLN VAL GLN HIS SEQRES 17 A 254 SER THR ASP GLY VAL PHE ASN ASN PRO ILE ALA LEU ALA SEQRES 18 A 254 ILE ALA PRO GLY VAL ILE VAL THR LEU THR ASN ILE ARG SEQRES 19 A 254 ASP VAL ILE ALA SER LEU ALA ILE MET LEU PHE VAL CYS SEQRES 20 A 254 GLY GLU ARG PRO SER SER SER SEQRES 1 B 263 ASP ALA VAL THR CYS THR ALA SER GLU PRO ILE VAL ARG SEQRES 2 B 263 ILE VAL GLY ARG ASN GLY MET THR VAL ASP VAL ARG ASP SEQRES 3 B 263 ASP ASP PHE HIS ASP GLY ASN GLN ILE GLN LEU TRP PRO SEQRES 4 B 263 SER LYS SER ASN ASN ASP PRO ASN GLN LEU TRP THR ILE SEQRES 5 B 263 LYS LYS ASP GLY THR ILE ARG SER ASN GLY SER CYS LEU SEQRES 6 B 263 THR THR TYR GLY TYR THR ALA GLY VAL TYR VAL MET ILE SEQRES 7 B 263 PHE ASP CYS ASN THR ALA VAL ARG GLU ALA THR ILE TRP SEQRES 8 B 263 GLN ILE TRP GLY ASN GLY THR ILE ILE ASN PRO ARG SER SEQRES 9 B 263 ASN LEU VAL LEU ALA ALA SER SER GLY ILE LYS GLY THR SEQRES 10 B 263 THR LEU THR VAL GLN THR LEU ASP TYR THR LEU GLY GLN SEQRES 11 B 263 GLY TRP LEU ALA GLY ASN ASP THR ALA PRO ARG GLU THR SEQRES 12 B 263 THR ILE TYR GLY PHE ARG ASP LEU CYS MET GLU SER ALA SEQRES 13 B 263 GLY GLY SER VAL TYR VAL GLU THR CYS THR ALA GLY GLN SEQRES 14 B 263 GLU ASN GLN ARG TRP ALA LEU TYR GLY ASP GLY SER ILE SEQRES 15 B 263 ARG PRO LYS GLN LEU GLN SER GLN CYS LEU THR ASN GLY SEQRES 16 B 263 ARG ASP SER ILE SER THR VAL ILE ASN ILE VAL SER CYS SEQRES 17 B 263 SER ALA GLY SER SER GLY GLN ARG TRP VAL PHE THR ASN SEQRES 18 B 263 GLU GLY ALA ILE LEU ASN LEU LYS ASN GLY LEU ALA MET SEQRES 19 B 263 ASP VAL ALA GLN ALA ASN PRO SER LEU GLN ARG ILE ILE SEQRES 20 B 263 ILE TYR PRO ALA THR GLY ASN PRO ASN GLN MET TRP LEU SEQRES 21 B 263 PRO VAL PRO MODRES 1M2T ASN B 383 ASN GLYCOSYLATION SITE HET NAG A 500 14 HET FUC A 501 10 HET NAG A 502 14 HET ADE A9550 10 HET GOL A 600 6 HET GOL A 601 6 HET GOL A 700 6 HET GOL A 702 6 HET NAG B 600 14 HET FUC B 601 10 HET NAG B 602 14 HET NAG B 603 14 HET NAG B 604 14 HET GOL B 701 6 HET GOL B 703 6 HET GOL B 704 6 HET GOL B 705 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM ADE ADENINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 4 FUC 2(C6 H12 O5) FORMUL 6 ADE C5 H5 N5 FORMUL 7 GOL 8(C3 H8 O3) FORMUL 20 HOH *503(H2 O) HELIX 1 1 THR A 13 VAL A 28 1 16 HELIX 2 2 GLY A 95 GLN A 99 5 5 HELIX 3 3 SER A 114 GLY A 123 1 10 HELIX 4 4 HIS A 124 ILE A 128 5 5 HELIX 5 5 GLY A 131 PHE A 144 1 14 HELIX 6 6 GLN A 148 ILE A 163 1 16 HELIX 7 7 ILE A 163 PHE A 169 1 7 HELIX 8 8 PHE A 169 GLY A 183 1 15 HELIX 9 9 ASP A 189 HIS A 208 1 20 HELIX 10 10 ARG A 234 VAL A 236 5 3 HELIX 11 11 GLY B 263 MET B 267 5 5 HELIX 12 12 ASP B 273 ASP B 275 5 3 HELIX 13 13 ASP B 292 LEU B 296 5 5 HELIX 14 14 VAL B 332 ILE B 337 5 6 HELIX 15 15 THR B 374 GLY B 378 5 5 HELIX 16 16 GLY B 394 LEU B 398 5 5 HELIX 17 17 GLN B 416 GLN B 419 5 4 HELIX 18 18 SER B 459 GLN B 462 5 4 HELIX 19 19 GLN B 485 GLN B 491 5 7 HELIX 20 20 ASN B 501 MET B 505 5 5 SHEET 1 A 6 GLU A 2 THR A 8 0 SHEET 2 A 6 PHE A 53 ASN A 60 1 O LEU A 55 N LEU A 4 SHEET 3 A 6 THR A 65 ASP A 71 -1 O ILE A 70 N VAL A 54 SHEET 4 A 6 VAL A 77 ALA A 82 -1 O ALA A 79 N ALA A 69 SHEET 5 A 6 GLN A 85 PHE A 88 -1 O TYR A 87 N TYR A 80 SHEET 6 A 6 THR A 105 SER A 108 1 O SER A 107 N PHE A 88 SHEET 1 B 2 SER A 29 SER A 34 0 SHEET 2 B 2 ILE A 37 LEU A 40 -1 O ILE A 37 N SER A 34 SHEET 1 C 2 VAL A 213 ILE A 222 0 SHEET 2 C 2 VAL A 226 ASN A 232 -1 O VAL A 226 N ILE A 222 SHEET 1 D 5 ILE B 258 VAL B 259 0 SHEET 2 D 5 TRP B 297 ILE B 299 -1 O TRP B 297 N VAL B 259 SHEET 3 D 5 ILE B 305 SER B 307 -1 O ARG B 306 N THR B 298 SHEET 4 D 5 SER B 310 THR B 314 -1 O SER B 310 N SER B 307 SHEET 5 D 5 VAL B 323 ASP B 327 -1 O PHE B 326 N CYS B 311 SHEET 1 E 2 ILE B 261 VAL B 262 0 SHEET 2 E 2 LEU B 380 ALA B 381 -1 O LEU B 380 N VAL B 262 SHEET 1 F 2 THR B 268 VAL B 271 0 SHEET 2 F 2 ILE B 282 TRP B 285 -1 O GLN B 283 N ASP B 270 SHEET 1 G 4 GLN B 339 ILE B 340 0 SHEET 2 G 4 ILE B 346 ASN B 348 -1 O ILE B 347 N GLN B 339 SHEET 3 G 4 LEU B 353 ALA B 356 -1 O LEU B 353 N ASN B 348 SHEET 4 G 4 THR B 367 GLN B 369 -1 O GLN B 369 N VAL B 354 SHEET 1 H 4 ILE B 429 PRO B 431 0 SHEET 2 H 4 TRP B 421 LEU B 423 -1 N ALA B 422 O ARG B 430 SHEET 3 H 4 ARG B 388 TYR B 393 -1 N ARG B 388 O LEU B 423 SHEET 4 H 4 LEU B 507 VAL B 509 -1 O LEU B 507 N TYR B 393 SHEET 1 I 2 CYS B 399 ALA B 403 0 SHEET 2 I 2 SER B 406 GLU B 410 -1 O TYR B 408 N GLU B 401 SHEET 1 J 2 GLN B 437 THR B 440 0 SHEET 2 J 2 ASN B 451 SER B 454 -1 O ASN B 451 N THR B 440 SHEET 1 K 2 TRP B 464 PHE B 466 0 SHEET 2 K 2 ILE B 472 ASN B 474 -1 O LEU B 473 N VAL B 465 SHEET 1 L 2 ALA B 480 VAL B 483 0 SHEET 2 L 2 ILE B 493 TYR B 496 -1 O ILE B 494 N ASP B 482 SSBOND 1 CYS A 247 CYS B 252 1555 1555 2.04 SSBOND 2 CYS B 311 CYS B 328 1555 1555 2.08 SSBOND 3 CYS B 399 CYS B 412 1555 1555 2.08 SSBOND 4 CYS B 438 CYS B 455 1555 1555 2.04 LINK ND2 ASN B 383 C1 NAG B 603 1555 1555 1.61 CRYST1 107.120 107.120 309.820 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009335 0.005390 0.000000 0.00000 SCALE2 0.000000 0.010780 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003228 0.00000