HEADER SIGNALING PROTEIN 24-NOV-01 1KFZ TITLE SOLUTION STRUCTURE OF C-TERMINAL SEM-5 SH3 DOMAIN (ENSEMBLE OF 16 TITLE 2 STRUCTURES) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEX MUSCLE ABNORMAL PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL SH3 DOMAIN (RESIDUES 155-214); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: SEM-5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET19B KEYWDS ALL BETA PROTEIN, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 16 AUTHOR J.C.FERREON,D.E.VOLK,B.A.LUXON,D.GORENSTEIN,V.J.HILSER REVDAT 4 27-OCT-21 1KFZ 1 REMARK SEQADV REVDAT 3 24-FEB-09 1KFZ 1 VERSN REVDAT 2 04-NOV-03 1KFZ 3 ATOM REVDAT 1 20-MAY-03 1KFZ 0 JRNL AUTH J.C.FERREON,D.E.VOLK,B.A.LUXON,D.GORENSTEIN,V.J.HILSER JRNL TITL SOLUTION STRUCTURE, DYNAMICS AND THERMODYNAMICS OF THE JRNL TITL 2 NATIVE STATE ENSEMBLE OF SEM-5 C-TERMINAL SH3 DOMAIN JRNL REF BIOCHEMISTRY V. 42 5582 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12741814 JRNL DOI 10.1021/BI030005J REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX V.98, CNS 1.0 REMARK 3 AUTHORS : MSI (FELIX), BRUNGER, ET AL. (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KFZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-01. REMARK 100 THE DEPOSITION ID IS D_1000014916. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.8 REMARK 210 IONIC STRENGTH : 100 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM SEM-5 SH3 DOMAIN, BOTH 15N, REMARK 210 AND 15N,13C LABELED, 50 MM REMARK 210 SODIUM ACETATE BUFFER, 10 MM REMARK 210 CACL2, 100 MM NACL, PH 4.8, 90% REMARK 210 H2O, 10%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 15N-NOESY-HSQC; 3D 13C-NOESY REMARK 210 -HSQC; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 400 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 1.0, CNS 1.0 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 2 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 163 140.20 -170.12 REMARK 500 1 LYS A 176 -168.95 -115.65 REMARK 500 1 ASN A 185 -171.73 -175.16 REMARK 500 1 LYS A 186 51.84 -151.39 REMARK 500 1 ASN A 198 -67.70 170.94 REMARK 500 1 TYR A 211 -62.59 -106.26 REMARK 500 1 SER A 213 178.17 -54.96 REMARK 500 2 MET A 154 -77.51 -133.48 REMARK 500 2 PHE A 163 139.49 -170.16 REMARK 500 2 ASN A 166 78.43 -109.92 REMARK 500 2 LYS A 176 -168.19 -116.15 REMARK 500 2 VAL A 180 93.46 -69.59 REMARK 500 2 ASN A 197 64.86 66.03 REMARK 500 2 ASN A 198 11.81 82.69 REMARK 500 2 TYR A 211 -68.59 -101.45 REMARK 500 3 MET A 154 -80.59 62.60 REMARK 500 3 VAL A 180 96.07 -69.68 REMARK 500 3 ASN A 197 -62.60 76.23 REMARK 500 3 ASN A 198 29.62 -164.61 REMARK 500 3 PRO A 204 108.67 -59.82 REMARK 500 3 TYR A 211 -65.67 -98.88 REMARK 500 3 ASN A 212 74.47 61.77 REMARK 500 4 MET A 154 117.98 62.24 REMARK 500 4 PHE A 163 140.24 -170.28 REMARK 500 4 LEU A 196 59.53 -116.96 REMARK 500 4 ASN A 197 65.98 67.93 REMARK 500 4 ASN A 198 10.85 83.30 REMARK 500 4 ALA A 209 114.65 -161.49 REMARK 500 4 TYR A 211 -68.71 -99.94 REMARK 500 4 ASN A 212 74.58 61.75 REMARK 500 5 MET A 154 -77.26 -85.38 REMARK 500 5 ASN A 166 78.59 -109.67 REMARK 500 5 VAL A 180 94.70 -69.70 REMARK 500 5 ASN A 185 174.65 179.75 REMARK 500 5 ASN A 197 -60.03 76.59 REMARK 500 5 ASN A 198 -40.38 -143.08 REMARK 500 5 PHE A 203 149.45 -170.09 REMARK 500 5 ALA A 209 111.98 -163.24 REMARK 500 5 TYR A 211 -66.15 -93.25 REMARK 500 5 SER A 213 80.61 -64.77 REMARK 500 6 PHE A 163 -164.23 -170.05 REMARK 500 6 ASN A 197 -59.87 76.61 REMARK 500 6 ASN A 198 -38.76 -150.29 REMARK 500 6 TYR A 211 -68.82 -96.35 REMARK 500 6 ASN A 212 74.61 61.73 REMARK 500 7 GLU A 155 112.84 -166.08 REMARK 500 7 PHE A 163 140.16 -170.25 REMARK 500 7 LEU A 196 86.04 -69.99 REMARK 500 7 ASN A 197 -59.73 77.68 REMARK 500 7 ASN A 198 -39.82 -146.33 REMARK 500 REMARK 500 THIS ENTRY HAS 128 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K76 RELATED DB: PDB REMARK 900 1K76 IS THE SOLUTION STRUCTURE OF C-TERMINAL SEM-5 SH3 DOMAIN REMARK 900 (MINIMIZED AVERAGE STRUCTURE). DBREF 1KFZ A 155 214 UNP P29355 SEM5_CAEEL 155 214 SEQADV 1KFZ HIS A 153 UNP P29355 CLONING ARTIFACT SEQADV 1KFZ MET A 154 UNP P29355 CLONING ARTIFACT SEQADV 1KFZ ALA A 209 UNP P29355 CYS 209 ENGINEERED MUTATION SEQRES 1 A 62 HIS MET GLU THR LYS PHE VAL GLN ALA LEU PHE ASP PHE SEQRES 2 A 62 ASN PRO GLN GLU SER GLY GLU LEU ALA PHE LYS ARG GLY SEQRES 3 A 62 ASP VAL ILE THR LEU ILE ASN LYS ASP ASP PRO ASN TRP SEQRES 4 A 62 TRP GLU GLY GLN LEU ASN ASN ARG ARG GLY ILE PHE PRO SEQRES 5 A 62 SER ASN TYR VAL ALA PRO TYR ASN SER ASN SHEET 1 A 5 ARG A 199 PRO A 204 0 SHEET 2 A 5 TRP A 191 LEU A 196 -1 N TRP A 192 O PHE A 203 SHEET 3 A 5 VAL A 180 ASN A 185 -1 N THR A 182 O GLN A 195 SHEET 4 A 5 LYS A 157 ALA A 161 -1 N VAL A 159 O ILE A 181 SHEET 5 A 5 VAL A 208 PRO A 210 -1 O ALA A 209 N GLN A 160 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16