HEADER DNA BINDING PROTEIN 09-JUL-01 1JJR TITLE THE THREE-DIMENSIONAL STRUCTURE OF THE C-TERMINAL DNA BINDING DOMAIN TITLE 2 OF HUMAN KU70 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYROID AUTOANTIGEN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 SYNONYM: KU70; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KU70; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DNA REPAIR PROTEIN, PROTEIN-DNA INTERACTION, KU70, SOLUTION KEYWDS 2 STRUCTURE, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Z.ZHANG,Y.CHEN REVDAT 4 23-FEB-22 1JJR 1 REMARK REVDAT 3 24-FEB-09 1JJR 1 VERSN REVDAT 2 24-OCT-01 1JJR 1 JRNL REVDAT 1 03-OCT-01 1JJR 0 JRNL AUTH Z.ZHANG,L.ZHU,D.LIN,F.CHEN,D.J.CHEN,Y.CHEN JRNL TITL THE THREE-DIMENSIONAL STRUCTURE OF THE C-TERMINAL JRNL TITL 2 DNA-BINDING DOMAIN OF HUMAN KU70. JRNL REF J.BIOL.CHEM. V. 276 38231 2001 JRNL REFN ISSN 0021-9258 JRNL PMID 11457852 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX 98, X-PLOR CNS 1.0 REMARK 3 AUTHORS : MSI (FELIX), A.T.BRUNGER, P.D.ADAMS, G.M.CLORE, REMARK 3 W.L.DELANO, P.GROS, R.W.GROSSE-KUNSTLEVE, (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JJR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-01. REMARK 100 THE DEPOSITION ID IS D_1000013854. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 100 MM NA PHOSPHATE REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM KU70_CTD 15N,13C: 100MM REMARK 210 PHOSPHATE BUFFER PH6.0; 1.0 MM REMARK 210 KU70_CTD 15N,13C; 100MM REMARK 210 PHOSPHATE BUFFER PH6.0; 0.8 MM REMARK 210 KU70_CTD 15N; 100MM PHOSPHATE REMARK 210 BUFFER PH6.0 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1B, DYANA 1.5, X-PLOR CNS REMARK 210 1.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 49 H LYS A 53 1.59 REMARK 500 O LEU A 88 H THR A 92 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 47 44.45 70.81 REMARK 500 1 GLU A 49 -42.84 163.11 REMARK 500 1 SER A 57 -77.01 -53.26 REMARK 500 1 PHE A 64 158.27 -49.42 REMARK 500 1 THR A 65 -168.00 -73.89 REMARK 500 1 SER A 80 176.58 68.23 REMARK 500 1 LYS A 83 -73.38 -157.39 REMARK 500 1 LYS A 84 -83.77 168.90 REMARK 500 1 PHE A 95 27.66 -148.50 REMARK 500 2 VAL A 45 34.71 -78.43 REMARK 500 2 TYR A 47 50.99 70.42 REMARK 500 2 GLU A 49 -42.16 167.39 REMARK 500 2 SER A 57 -74.37 -53.70 REMARK 500 2 LYS A 58 -74.77 -61.79 REMARK 500 2 PHE A 64 155.80 -49.92 REMARK 500 2 THR A 65 -169.53 -74.40 REMARK 500 2 LYS A 79 24.40 -141.64 REMARK 500 2 SER A 80 -166.99 -77.83 REMARK 500 2 LEU A 82 -86.17 -158.86 REMARK 500 2 LYS A 84 -65.63 169.13 REMARK 500 3 GLU A 49 -43.43 168.16 REMARK 500 3 THR A 65 -168.20 -74.13 REMARK 500 3 SER A 80 -166.89 45.29 REMARK 500 3 LEU A 82 13.09 -153.31 REMARK 500 3 LYS A 84 -79.35 71.39 REMARK 500 3 PHE A 95 34.84 -147.19 REMARK 500 4 VAL A 45 -54.16 -160.52 REMARK 500 4 GLU A 46 -70.49 -164.25 REMARK 500 4 TYR A 47 75.50 -156.17 REMARK 500 4 GLU A 49 -37.22 168.66 REMARK 500 4 SER A 57 -72.75 -54.48 REMARK 500 4 LYS A 58 -74.34 -61.53 REMARK 500 4 PHE A 64 151.79 -49.82 REMARK 500 4 THR A 65 -165.49 -73.87 REMARK 500 4 LYS A 79 75.58 -100.29 REMARK 500 4 SER A 80 -169.07 -75.85 REMARK 500 4 LEU A 82 11.23 -155.40 REMARK 500 4 LYS A 84 -76.82 69.43 REMARK 500 4 PHE A 95 27.96 -147.65 REMARK 500 5 TYR A 47 83.05 64.42 REMARK 500 5 GLU A 49 -39.47 164.83 REMARK 500 5 SER A 57 -76.11 -52.78 REMARK 500 5 PHE A 64 157.26 -49.84 REMARK 500 5 THR A 65 -169.40 -73.86 REMARK 500 5 SER A 80 169.30 65.63 REMARK 500 5 LYS A 83 8.33 -155.88 REMARK 500 5 LYS A 84 -76.48 65.99 REMARK 500 5 PHE A 95 19.75 -147.64 REMARK 500 6 GLU A 49 -39.46 168.24 REMARK 500 6 SER A 57 -75.70 -53.54 REMARK 500 REMARK 500 THIS ENTRY HAS 176 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1JJR A 44 97 GB 339667 AAA61177 556 609 SEQRES 1 A 151 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 151 LEU VAL PRO ARG GLY SER HIS MET ALA SER PRO GLU GLY SEQRES 3 A 151 LYS VAL THR LYS ARG LYS HIS ASP ASN GLU GLY SER GLY SEQRES 4 A 151 SER LYS ARG PRO LYS VAL GLU TYR SER GLU GLU GLU LEU SEQRES 5 A 151 LYS THR HIS ILE SER LYS GLY THR LEU GLY LYS PHE THR SEQRES 6 A 151 VAL PRO MET LEU LYS GLU ALA CYS ARG ALA TYR GLY LEU SEQRES 7 A 151 LYS SER GLY LEU LYS LYS GLN GLU LEU LEU GLU ALA LEU SEQRES 8 A 151 THR LYS HIS PHE GLN ASP LYS VAL GLU TYR SER GLU GLU SEQRES 9 A 151 GLU LEU LYS THR HIS ILE SER LYS GLY THR LEU GLY LYS SEQRES 10 A 151 PHE THR VAL PRO MET LEU LYS GLU ALA CYS ARG ALA TYR SEQRES 11 A 151 GLY LEU LYS SER GLY LEU LYS LYS GLN GLU LEU LEU GLU SEQRES 12 A 151 ALA LEU THR LYS HIS PHE GLN ASP HELIX 1 1 GLU A 49 GLY A 59 1 11 HELIX 2 2 THR A 65 GLY A 77 1 13 HELIX 3 3 LYS A 84 HIS A 94 1 11 CRYST1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20