HEADER TRANSCRIPTION/DNA 25-AUG-00 1GD2 TITLE CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TITLE 2 TO DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*AP*GP*GP*TP*TP*AP*CP*GP*TP*AP*AP*CP*C)-3'); COMPND 4 CHAIN: A, B, C, D; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRANSCRIPTION FACTOR PAP1; COMPND 8 CHAIN: E, F, G, H, I, J; COMPND 9 FRAGMENT: LEUCINE ZIPPER DOMAIN; COMPND 10 SYNONYM: AP-1-LIKE TRANSCRIPTION FACTOR; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 5 ORGANISM_COMMON: FISSION YEAST; SOURCE 6 ORGANISM_TAXID: 4896; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS BASIC LEUCINE ZIPPER, PROTEIN-DNA COMPLEX, KEYWDS 2 TRANSCRIPTION/DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.FUJII,T.SHIMIZU,T.TODA,M.YANAGIDA,T.HAKOSHIMA REVDAT 3 24-FEB-09 1GD2 1 VERSN REVDAT 2 01-APR-03 1GD2 1 JRNL REVDAT 1 02-OCT-00 1GD2 0 JRNL AUTH Y.FUJII,T.SHIMIZU,T.TODA,M.YANAGIDA,T.HAKOSHIMA JRNL TITL STRUCTURAL BASIS FOR THE DIVERSITY OF DNA JRNL TITL 2 RECOGNITION BY BZIP TRANSCRIPTION FACTORS. JRNL REF NAT.STRUCT.BIOL. V. 7 889 2000 JRNL REFN ISSN 1072-8368 JRNL PMID 11017199 JRNL DOI 10.1038/82822 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.FUJII,T.OHIRA,Y.KYOGOKU,T.TODA,M.YANAGIDA, REMARK 1 AUTH 2 T.HAKOSHIMA REMARK 1 TITL CRYSTALLOGRAPHIC CHARACTERIZATION OF PAP1-DNA REMARK 1 TITL 2 COMPLEX REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 54 1014 1998 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444998003266 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 83.3 REMARK 3 NUMBER OF REFLECTIONS : 53446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5430 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2400 REMARK 3 NUCLEIC ACID ATOMS : 1056 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 831 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GD2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB ON 19-SEP-00. REMARK 100 THE RCSB ID CODE IS RCSB005044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-C REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53501 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 45.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.4 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.24400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, KCL, MES, PH 5.8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 120.45500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 69.54473 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 14.62333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 120.45500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 69.54473 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 14.62333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 120.45500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 69.54473 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 14.62333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 139.08945 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 29.24667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 139.08945 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 29.24667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 139.08945 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 29.24667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSMBLY IS A DIMER CONSTRUCTED FROM CHAIN REMARK 300 E AND F, CHAIN G AND H, AND CHAIN I AND J. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG E 71 REMARK 465 LYS E 72 REMARK 465 ASN E 73 REMARK 465 SER E 74 REMARK 465 LYS E 140 REMARK 465 ARG F 71 REMARK 465 LYS F 72 REMARK 465 ASN F 73 REMARK 465 SER F 74 REMARK 465 ASP F 75 REMARK 465 GLN F 76 REMARK 465 ARG G 71 REMARK 465 LYS G 72 REMARK 465 ASN G 73 REMARK 465 SER G 74 REMARK 465 ASP G 75 REMARK 465 LYS G 140 REMARK 465 ARG H 71 REMARK 465 LYS H 72 REMARK 465 ASN H 73 REMARK 465 SER H 74 REMARK 465 ASP H 75 REMARK 465 LYS H 140 REMARK 465 ARG I 71 REMARK 465 LYS I 72 REMARK 465 ASN I 73 REMARK 465 SER I 74 REMARK 465 ASP I 75 REMARK 465 GLN I 76 REMARK 465 GLU I 77 REMARK 465 PRO I 78 REMARK 465 SER I 79 REMARK 465 SER I 80 REMARK 465 LYS I 81 REMARK 465 ALA I 88 REMARK 465 ALA I 89 REMARK 465 GLN I 90 REMARK 465 ARG I 91 REMARK 465 ALA I 92 REMARK 465 PHE I 93 REMARK 465 ARG I 94 REMARK 465 LYS I 95 REMARK 465 ARG I 96 REMARK 465 LYS I 97 REMARK 465 GLU I 98 REMARK 465 ASP I 99 REMARK 465 HIS I 100 REMARK 465 LEU I 101 REMARK 465 LYS I 102 REMARK 465 ALA I 103 REMARK 465 LEU I 104 REMARK 465 GLN I 127 REMARK 465 LYS I 128 REMARK 465 ARG J 71 REMARK 465 LYS J 72 REMARK 465 ASN J 73 REMARK 465 SER J 74 REMARK 465 ASP J 75 REMARK 465 GLN J 76 REMARK 465 GLU J 77 REMARK 465 PRO J 78 REMARK 465 SER J 79 REMARK 465 SER J 80 REMARK 465 LYS J 81 REMARK 465 ARG J 82 REMARK 465 LYS J 83 REMARK 465 ALA J 84 REMARK 465 GLN J 85 REMARK 465 ASN J 86 REMARK 465 ARG J 87 REMARK 465 ALA J 88 REMARK 465 ALA J 89 REMARK 465 GLN J 90 REMARK 465 ARG J 91 REMARK 465 ALA J 92 REMARK 465 PHE J 93 REMARK 465 ARG J 94 REMARK 465 LYS J 95 REMARK 465 ARG J 96 REMARK 465 LYS J 97 REMARK 465 GLU J 98 REMARK 465 ASP J 99 REMARK 465 HIS J 100 REMARK 465 LEU J 101 REMARK 465 LYS J 102 REMARK 465 ALA J 103 REMARK 465 LEU J 104 REMARK 465 GLU J 105 REMARK 465 SER J 117 REMARK 465 THR J 118 REMARK 465 THR J 119 REMARK 465 LEU J 120 REMARK 465 GLU J 121 REMARK 465 ASN J 122 REMARK 465 ASP J 123 REMARK 465 GLN J 124 REMARK 465 LEU J 125 REMARK 465 ARG J 126 REMARK 465 GLN J 127 REMARK 465 LYS J 128 REMARK 465 VAL J 129 REMARK 465 ARG J 130 REMARK 465 GLN J 131 REMARK 465 LEU J 132 REMARK 465 GLU J 133 REMARK 465 GLU J 134 REMARK 465 GLU J 135 REMARK 465 LEU J 136 REMARK 465 ARG J 137 REMARK 465 ILE J 138 REMARK 465 LEU J 139 REMARK 465 LYS J 140 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP E 75 CG OD1 OD2 REMARK 470 ARG E 137 CG CD NE CZ NH1 NH2 REMARK 470 LEU E 139 CG CD1 CD2 REMARK 470 GLN F 127 CG CD OE1 NE2 REMARK 470 ARG F 130 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 140 CG CD CE NZ REMARK 470 GLN G 76 CG CD OE1 NE2 REMARK 470 GLN G 127 CG CD OE1 NE2 REMARK 470 LEU G 136 CG CD1 CD2 REMARK 470 GLN H 76 CG CD OE1 NE2 REMARK 470 GLN H 124 CG CD OE1 NE2 REMARK 470 ARG H 130 CG CD NE CZ NH1 NH2 REMARK 470 ARG H 137 CG CD NE CZ NH1 NH2 REMARK 470 ILE H 138 CG1 CG2 CD1 REMARK 470 ARG I 82 CG CD NE CZ NH1 NH2 REMARK 470 LYS I 83 CG CD CE NZ REMARK 470 GLN I 85 CG CD OE1 NE2 REMARK 470 ASN I 86 CG OD1 ND2 REMARK 470 ARG I 87 CG CD NE CZ NH1 NH2 REMARK 470 GLU I 105 CG CD OE1 OE2 REMARK 470 GLU I 113 CG CD OE1 OE2 REMARK 470 ASP I 123 CG OD1 OD2 REMARK 470 LEU I 125 CG CD1 CD2 REMARK 470 VAL I 129 CG1 CG2 REMARK 470 ARG I 130 CG CD NE CZ NH1 NH2 REMARK 470 GLN I 131 CG CD OE1 NE2 REMARK 470 LEU I 132 CG CD1 CD2 REMARK 470 GLU I 133 CG CD OE1 OE2 REMARK 470 GLU I 134 CG CD OE1 OE2 REMARK 470 GLU I 135 CG CD OE1 OE2 REMARK 470 LEU I 136 CG CD1 CD2 REMARK 470 ARG I 137 CG CD NE CZ NH1 NH2 REMARK 470 ILE I 138 CG1 CG2 CD1 REMARK 470 LEU I 139 CG CD1 CD2 REMARK 470 LYS I 140 CG CD CE NZ REMARK 470 THR J 106 OG1 CG2 REMARK 470 VAL J 108 CG1 CG2 REMARK 470 VAL J 109 CG1 CG2 REMARK 470 THR J 110 OG1 CG2 REMARK 470 LYS J 112 CG CD CE NZ REMARK 470 GLU J 113 CG CD OE1 OE2 REMARK 470 LEU J 114 CG CD1 CD2 REMARK 470 HIS J 115 CG ND1 CD2 CE1 NE2 REMARK 470 SER J 116 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS I 83 39.43 -144.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC A -1 0.06 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH J 816 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH G 243 DISTANCE = 8.15 ANGSTROMS DBREF 1GD2 E 71 140 UNP Q01663 AP1_SCHPO 71 140 DBREF 1GD2 F 71 140 UNP Q01663 AP1_SCHPO 71 140 DBREF 1GD2 G 71 140 UNP Q01663 AP1_SCHPO 71 140 DBREF 1GD2 H 71 140 UNP Q01663 AP1_SCHPO 71 140 DBREF 1GD2 I 71 140 UNP Q01663 AP1_SCHPO 71 140 DBREF 1GD2 J 71 140 UNP Q01663 AP1_SCHPO 71 140 DBREF 1GD2 A -7 6 PDB 1GD2 1GD2 -7 6 DBREF 1GD2 B -7 6 PDB 1GD2 1GD2 -7 6 DBREF 1GD2 C -7 6 PDB 1GD2 1GD2 -7 6 DBREF 1GD2 D -7 6 PDB 1GD2 1GD2 -7 6 SEQRES 1 A 13 DA DG DG DT DT DA DC DG DT DA DA DC DC SEQRES 1 B 13 DA DG DG DT DT DA DC DG DT DA DA DC DC SEQRES 1 C 13 DA DG DG DT DT DA DC DG DT DA DA DC DC SEQRES 1 D 13 DA DG DG DT DT DA DC DG DT DA DA DC DC SEQRES 1 E 70 ARG LYS ASN SER ASP GLN GLU PRO SER SER LYS ARG LYS SEQRES 2 E 70 ALA GLN ASN ARG ALA ALA GLN ARG ALA PHE ARG LYS ARG SEQRES 3 E 70 LYS GLU ASP HIS LEU LYS ALA LEU GLU THR GLN VAL VAL SEQRES 4 E 70 THR LEU LYS GLU LEU HIS SER SER THR THR LEU GLU ASN SEQRES 5 E 70 ASP GLN LEU ARG GLN LYS VAL ARG GLN LEU GLU GLU GLU SEQRES 6 E 70 LEU ARG ILE LEU LYS SEQRES 1 F 70 ARG LYS ASN SER ASP GLN GLU PRO SER SER LYS ARG LYS SEQRES 2 F 70 ALA GLN ASN ARG ALA ALA GLN ARG ALA PHE ARG LYS ARG SEQRES 3 F 70 LYS GLU ASP HIS LEU LYS ALA LEU GLU THR GLN VAL VAL SEQRES 4 F 70 THR LEU LYS GLU LEU HIS SER SER THR THR LEU GLU ASN SEQRES 5 F 70 ASP GLN LEU ARG GLN LYS VAL ARG GLN LEU GLU GLU GLU SEQRES 6 F 70 LEU ARG ILE LEU LYS SEQRES 1 G 70 ARG LYS ASN SER ASP GLN GLU PRO SER SER LYS ARG LYS SEQRES 2 G 70 ALA GLN ASN ARG ALA ALA GLN ARG ALA PHE ARG LYS ARG SEQRES 3 G 70 LYS GLU ASP HIS LEU LYS ALA LEU GLU THR GLN VAL VAL SEQRES 4 G 70 THR LEU LYS GLU LEU HIS SER SER THR THR LEU GLU ASN SEQRES 5 G 70 ASP GLN LEU ARG GLN LYS VAL ARG GLN LEU GLU GLU GLU SEQRES 6 G 70 LEU ARG ILE LEU LYS SEQRES 1 H 70 ARG LYS ASN SER ASP GLN GLU PRO SER SER LYS ARG LYS SEQRES 2 H 70 ALA GLN ASN ARG ALA ALA GLN ARG ALA PHE ARG LYS ARG SEQRES 3 H 70 LYS GLU ASP HIS LEU LYS ALA LEU GLU THR GLN VAL VAL SEQRES 4 H 70 THR LEU LYS GLU LEU HIS SER SER THR THR LEU GLU ASN SEQRES 5 H 70 ASP GLN LEU ARG GLN LYS VAL ARG GLN LEU GLU GLU GLU SEQRES 6 H 70 LEU ARG ILE LEU LYS SEQRES 1 I 70 ARG LYS ASN SER ASP GLN GLU PRO SER SER LYS ARG LYS SEQRES 2 I 70 ALA GLN ASN ARG ALA ALA GLN ARG ALA PHE ARG LYS ARG SEQRES 3 I 70 LYS GLU ASP HIS LEU LYS ALA LEU GLU THR GLN VAL VAL SEQRES 4 I 70 THR LEU LYS GLU LEU HIS SER SER THR THR LEU GLU ASN SEQRES 5 I 70 ASP GLN LEU ARG GLN LYS VAL ARG GLN LEU GLU GLU GLU SEQRES 6 I 70 LEU ARG ILE LEU LYS SEQRES 1 J 70 ARG LYS ASN SER ASP GLN GLU PRO SER SER LYS ARG LYS SEQRES 2 J 70 ALA GLN ASN ARG ALA ALA GLN ARG ALA PHE ARG LYS ARG SEQRES 3 J 70 LYS GLU ASP HIS LEU LYS ALA LEU GLU THR GLN VAL VAL SEQRES 4 J 70 THR LEU LYS GLU LEU HIS SER SER THR THR LEU GLU ASN SEQRES 5 J 70 ASP GLN LEU ARG GLN LYS VAL ARG GLN LEU GLU GLU GLU SEQRES 6 J 70 LEU ARG ILE LEU LYS FORMUL 11 HOH *831(H2 O) HELIX 1 1 SER E 79 ARG E 126 1 48 HELIX 2 2 GLN E 127 LEU E 139 1 13 HELIX 3 3 SER F 79 LYS F 140 1 62 HELIX 4 4 SER G 79 ILE G 138 1 60 HELIX 5 5 SER H 79 LEU H 136 1 58 HELIX 6 6 THR I 106 ARG I 126 1 21 HELIX 7 7 VAL I 129 LYS I 140 1 12 HELIX 8 8 VAL J 108 GLU J 113 1 6 CRYST1 240.910 240.910 43.870 90.00 90.00 120.00 H 3 54 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004151 0.002397 0.000000 0.00000 SCALE2 0.000000 0.004793 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022795 0.00000