HEADER GENE REGULATION, CELL CYCLE 06-NOV-00 1G6J TITLE STRUCTURE OF RECOMBINANT HUMAN UBIQUITIN IN AOT REVERSE MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15 KEYWDS REVERSE MICELLE, AOT, ENCAPSULATION, GENE REGULATION, CELL CYCLE EXPDTA SOLUTION NMR NUMMDL 32 AUTHOR C.R.BABU,P.F.FLYNN,A.J.WAND REVDAT 3 23-FEB-22 1G6J 1 REMARK REVDAT 2 24-FEB-09 1G6J 1 VERSN REVDAT 1 28-MAR-01 1G6J 0 JRNL AUTH C.R.BABU,P.F.FLYNN,A.J.WAND JRNL TITL VALIDATION OF PROTEIN STRUCTURE FROM PREPARATIONS OF JRNL TITL 2 ENCAPSULATED PROTEINS DISSOLVED IN LOW VISCOSITY FLUIDS. JRNL REF J.AM.CHEM.SOC. V. 123 2691 2001 JRNL REFN ISSN 0002-7863 JRNL PMID 11456950 JRNL DOI 10.1021/JA005766D REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.J.WAND,M.R.EHRHARDT,P.F.FLYNN REMARK 1 TITL HIGH-RESOLUTION NMR OF ENCAPSULATED PROTEINS DISSOLVED IN REMARK 1 TITL 2 LOW-VISCOSITY FLUIDS REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 95 15299 1998 REMARK 1 REFN ISSN 0027-8424 REMARK 1 DOI 10.1073/PNAS.95.26.15299 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.R.EHRHARDT,P.F.FLYNN,A.J.WAND REMARK 1 TITL PREPARATION OF ENCAPSULATED PROTEINS DISSOLVED IN LOW REMARK 1 TITL 2 VISCOSITY FLUIDS REMARK 1 REF J.BIOMOL.NMR V. 14 75 1999 REMARK 1 REFN ISSN 0925-2738 REMARK 1 DOI 10.1023/A:1008354507250 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5 REMARK 3 AUTHORS : GUNTERT, P., MUMENTHALER, C., WUTHRICH, K. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 1805 NOES REMARK 3 AND 63 PHI RESTRAINTS REMARK 4 REMARK 4 1G6J COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-NOV-00. REMARK 100 THE DEPOSITION ID IS D_1000012295. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293; 293 REMARK 210 PH : NULL; NULL REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : AMBIENT; 50 PSI REMARK 210 SAMPLE CONTENTS : 4 MG C13/N15 UBIQUITIN IN 13.5 REMARK 210 UL OF BUFFER (50MM SODIUM REMARK 210 ACETATE, 250MM SODIUM CHLORIDE, REMARK 210 PH 5.0) AND 1 ML D12-PENTANE; 8 REMARK 210 MG 13/N15 UBIQUITIN IN 27 UL OF REMARK 210 BUFFER (50MM SODIUM ACETATE, REMARK 210 250MM SODIUM CHLORIDE, PH 5.0); REMARK 210 4 MG N15 UBIQUITIN IN 13.5 UL OF REMARK 210 BUFFER (50MM SODIUM ACETATE, REMARK 210 250MM SODIUM CHLORIDE, PH 5.0) REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 97, XEASY 1.2 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS USING REMARK 210 DYANA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 32 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST TARGET FUNCTION VALUES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 25 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 33 -73.21 -77.13 REMARK 500 1 LEU A 73 -72.95 -80.05 REMARK 500 1 ARG A 74 -149.56 -86.20 REMARK 500 2 LYS A 33 -70.03 -79.10 REMARK 500 2 ASP A 52 104.76 -47.41 REMARK 500 2 ARG A 74 -153.50 -90.16 REMARK 500 3 LYS A 33 -73.05 -74.72 REMARK 500 3 ASP A 52 104.00 -47.01 REMARK 500 3 ARG A 74 -149.98 -90.19 REMARK 500 4 LYS A 33 -73.02 -74.84 REMARK 500 4 ASP A 52 104.22 -47.17 REMARK 500 4 ARG A 74 -150.69 -90.15 REMARK 500 5 THR A 9 44.41 -99.73 REMARK 500 5 LYS A 33 -74.81 -75.41 REMARK 500 5 ASP A 52 102.65 -46.96 REMARK 500 5 ARG A 74 -150.02 -90.11 REMARK 500 6 LYS A 33 -71.13 -79.73 REMARK 500 6 ASP A 52 105.63 -47.05 REMARK 500 6 ARG A 74 -156.27 -90.39 REMARK 500 7 LYS A 33 -75.12 -74.41 REMARK 500 7 ARG A 74 -149.94 -90.10 REMARK 500 8 ARG A 74 -150.18 -90.25 REMARK 500 9 LYS A 33 -74.94 -77.29 REMARK 500 9 LEU A 73 -73.56 -78.55 REMARK 500 10 THR A 9 39.87 -99.71 REMARK 500 10 LYS A 33 -77.50 -74.74 REMARK 500 10 ASP A 52 104.00 -46.77 REMARK 500 10 LEU A 73 -71.96 -79.45 REMARK 500 10 ARG A 74 -150.32 -90.34 REMARK 500 11 ASP A 52 104.81 -47.42 REMARK 500 11 ASN A 60 66.20 60.85 REMARK 500 11 LEU A 73 -70.84 -79.58 REMARK 500 11 ARG A 74 -150.03 -90.09 REMARK 500 12 THR A 9 43.82 -99.48 REMARK 500 12 LYS A 33 -72.46 -74.73 REMARK 500 12 ASP A 52 104.01 -47.35 REMARK 500 12 LEU A 73 -71.28 -77.30 REMARK 500 12 ARG A 74 -153.70 -90.35 REMARK 500 13 LYS A 33 -74.87 -74.64 REMARK 500 13 ARG A 74 -150.21 -90.07 REMARK 500 14 LYS A 33 -71.53 -74.58 REMARK 500 14 ASP A 52 106.35 -47.41 REMARK 500 14 ARG A 74 -149.93 -87.44 REMARK 500 15 LYS A 33 -78.23 -75.07 REMARK 500 15 ASP A 52 104.62 -47.39 REMARK 500 15 ASN A 60 66.19 62.57 REMARK 500 15 ARG A 74 -151.25 -90.31 REMARK 500 16 LYS A 33 -77.45 -78.76 REMARK 500 16 ARG A 74 -150.83 -90.23 REMARK 500 17 LYS A 33 -75.44 -75.11 REMARK 500 REMARK 500 THIS ENTRY HAS 103 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UBQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF UBIQUITIN REMARK 900 RELATED ID: 1D3Z RELATED DB: PDB REMARK 900 STRUCTURE OF UBIQUITIN IN AQUEOUS BUFFER DBREF 1G6J A 1 76 UNP P62988 UBIQ_HUMAN 1 76 SEQRES 1 A 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 A 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 A 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 A 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 A 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 A 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HELIX 1 1 THR A 22 GLU A 34 1 13 HELIX 2 2 LEU A 56 ASN A 60 5 5 SHEET 1 A 5 THR A 12 GLU A 16 0 SHEET 2 A 5 GLN A 2 LYS A 6 -1 O ILE A 3 N LEU A 15 SHEET 3 A 5 SER A 65 VAL A 70 1 O SER A 65 N PHE A 4 SHEET 4 A 5 ARG A 42 PHE A 45 -1 O ARG A 42 N VAL A 70 SHEET 5 A 5 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20 MODEL 21 MODEL 22 MODEL 23 MODEL 24 MODEL 25 MODEL 26 MODEL 27 MODEL 28 MODEL 29 MODEL 30 MODEL 31 MODEL 32