HEADER METALLOPROTEASE 17-AUG-98 1BQO TITLE DISCOVERY OF POTENT, ACHIRAL MATRIX METALLOPROTEINASE INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: STROMELYSIN-1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MMP-3; COMPND 5 EC: 3.4.24.17; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: COMPLEXED TO PG-117025 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STROMELYSIN, MATRIX METALLOPROTEASE, OSTEOARTHRITIS, STRUCTURE-BASED KEYWDS 2 DRUG DESIGN, METALLOPROTEASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PIKUL,K.L.M.DUNHAM,N.G.ALMSTEAD,B.DE,M.G.NATCHUS,M.V.ANASTASIO, AUTHOR 2 S.J.MCPHAIL,C.E.SNIDER,Y.O.TAIWO,T.J.RYDEL,C.M.DUNAWAY,F.GU, AUTHOR 3 G.E.MIELING REVDAT 4 13-JUL-11 1BQO 1 VERSN REVDAT 3 24-FEB-09 1BQO 1 VERSN REVDAT 2 01-APR-03 1BQO 1 JRNL REVDAT 1 17-AUG-99 1BQO 0 JRNL AUTH S.PIKUL,K.L.MCDOW DUNHAM,N.G.ALMSTEAD,B.DE,M.G.NATCHUS, JRNL AUTH 2 M.V.ANASTASIO,S.J.MCPHAIL,C.E.SNIDER,Y.O.TAIWO,T.RYDEL, JRNL AUTH 3 C.M.DUNAWAY,F.GU,G.E.MIELING JRNL TITL DISCOVERY OF POTENT, ACHIRAL MATRIX METALLOPROTEINASE JRNL TITL 2 INHIBITORS. JRNL REF J.MED.CHEM. V. 41 3568 1998 JRNL REFN ISSN 0022-2623 JRNL PMID 9733482 JRNL DOI 10.1021/JM980253R REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.81 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 14328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2722 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 75 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.80 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BQO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : MAR-94 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14328 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.8 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.95000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.05000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.05000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.95000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -139.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -18.95000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 79.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -53.05000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 -1.000000 0.000000 0.000000 -18.95000 REMARK 350 BIOMT2 1 0.000000 -1.000000 0.000000 79.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 -53.05000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 252 REMARK 465 PRO A 253 REMARK 465 GLU A 254 REMARK 465 THR A 255 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 86 157.61 -46.72 REMARK 500 ILE A 89 67.10 17.55 REMARK 500 ARG A 149 -133.70 44.37 REMARK 500 HIS A 151 -145.91 -120.32 REMARK 500 ASN A 162 -117.91 55.45 REMARK 500 ASP A 189 -160.10 -119.82 REMARK 500 THR A 190 31.75 -97.02 REMARK 500 PRO A 221 61.29 -67.22 REMARK 500 TYR A 223 -82.64 27.29 REMARK 500 ASP A 228 167.84 64.73 REMARK 500 PRO B 87 98.56 -60.74 REMARK 500 ARG B 149 -121.69 40.98 REMARK 500 PRO B 160 62.49 -65.95 REMARK 500 ASN B 162 -117.53 58.99 REMARK 500 ASP B 189 -154.62 -124.60 REMARK 500 PRO B 221 45.39 -69.77 REMARK 500 SER B 225 38.82 -90.77 REMARK 500 THR B 227 52.46 -102.48 REMARK 500 LEU B 229 -11.10 -161.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 TYR A 223 23.3 L L OUTSIDE RANGE REMARK 500 LEU A 229 23.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 201 NE2 REMARK 620 2 HIS A 205 NE2 96.3 REMARK 620 3 HIS A 211 NE2 97.7 97.2 REMARK 620 4 THR B 255 O 120.2 142.1 88.3 REMARK 620 5 THR B 255 OXT 111.0 95.7 146.9 63.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 151 NE2 REMARK 620 2 ASP A 153 OD2 99.1 REMARK 620 3 HIS A 166 NE2 121.4 120.6 REMARK 620 4 HIS A 179 ND1 103.4 98.4 110.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 159 O REMARK 620 2 VAL A 163 O 175.9 REMARK 620 3 ASP A 181 OD2 89.2 91.8 REMARK 620 4 GLU A 184 OE2 89.1 94.7 98.5 REMARK 620 5 ASP A 158 OD1 90.0 86.0 98.4 163.0 REMARK 620 6 GLY A 161 O 92.7 86.6 175.5 77.4 85.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 107 OD2 REMARK 620 2 ASP A 182 O 148.3 REMARK 620 3 GLU A 184 O 82.6 75.2 REMARK 620 4 HOH A 342 O 110.5 85.7 75.6 REMARK 620 5 ASP A 107 OD1 50.6 156.3 128.5 99.3 REMARK 620 6 ASP A 182 OD1 92.4 75.2 110.8 157.0 93.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 173 O REMARK 620 2 ASN A 175 O 89.5 REMARK 620 3 HOH A 314 O 97.9 90.6 REMARK 620 4 ASP A 177 OD1 102.8 91.7 159.2 REMARK 620 5 ASP A 141 O 173.1 97.4 81.6 77.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 201 NE2 REMARK 620 2 HIS B 205 NE2 91.3 REMARK 620 3 HIS B 211 NE2 101.2 98.7 REMARK 620 4 N25 B 401 O24 119.0 148.0 67.4 REMARK 620 5 N25 B 401 O26 115.0 101.0 138.0 76.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 151 NE2 REMARK 620 2 ASP B 153 OD2 93.3 REMARK 620 3 HIS B 166 NE2 124.2 120.0 REMARK 620 4 HIS B 179 ND1 106.1 101.6 108.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 158 OD1 REMARK 620 2 GLY B 159 O 101.9 REMARK 620 3 GLY B 161 O 67.9 100.8 REMARK 620 4 ASP B 181 OD2 108.2 85.9 172.8 REMARK 620 5 GLU B 184 OE2 166.8 75.1 99.7 84.6 REMARK 620 6 GLY B 161 N 105.2 54.5 54.7 132.4 62.4 REMARK 620 7 VAL B 163 O 92.4 164.8 89.3 84.6 92.2 126.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 107 OD1 REMARK 620 2 ASP B 107 OD2 54.5 REMARK 620 3 ASP B 182 O 165.1 128.7 REMARK 620 4 HOH B 409 O 97.6 110.0 94.3 REMARK 620 5 GLU B 184 O 117.0 68.0 74.2 78.4 REMARK 620 6 ASP B 182 OD1 98.5 89.5 68.0 159.7 104.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 141 O REMARK 620 2 GLY B 173 O 174.6 REMARK 620 3 ASN B 175 O 100.3 80.6 REMARK 620 4 ASP B 177 OD1 79.9 105.5 86.9 REMARK 620 5 HOH B 402 O 96.9 81.8 162.3 100.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE N25 B 401 DBREF 1BQO A 83 255 UNP P08254 MMP3_HUMAN 100 272 DBREF 1BQO B 83 255 UNP P08254 MMP3_HUMAN 100 272 SEQRES 1 A 173 PHE ARG THR PHE PRO GLY ILE PRO LYS TRP ARG LYS THR SEQRES 2 A 173 HIS LEU THR TYR ARG ILE VAL ASN TYR THR PRO ASP LEU SEQRES 3 A 173 PRO LYS ASP ALA VAL ASP SER ALA VAL GLU LYS ALA LEU SEQRES 4 A 173 LYS VAL TRP GLU GLU VAL THR PRO LEU THR PHE SER ARG SEQRES 5 A 173 LEU TYR GLU GLY GLU ALA ASP ILE MET ILE SER PHE ALA SEQRES 6 A 173 VAL ARG GLU HIS GLY ASP PHE TYR PRO PHE ASP GLY PRO SEQRES 7 A 173 GLY ASN VAL LEU ALA HIS ALA TYR ALA PRO GLY PRO GLY SEQRES 8 A 173 ILE ASN GLY ASP ALA HIS PHE ASP ASP ASP GLU GLN TRP SEQRES 9 A 173 THR LYS ASP THR THR GLY THR ASN LEU PHE LEU VAL ALA SEQRES 10 A 173 ALA HIS GLU ILE GLY HIS SER LEU GLY LEU PHE HIS SER SEQRES 11 A 173 ALA ASN THR GLU ALA LEU MET TYR PRO LEU TYR HIS SER SEQRES 12 A 173 LEU THR ASP LEU THR ARG PHE ARG LEU SER GLN ASP ASP SEQRES 13 A 173 ILE ASN GLY ILE GLN SER LEU TYR GLY PRO PRO PRO ASP SEQRES 14 A 173 SER PRO GLU THR SEQRES 1 B 173 PHE ARG THR PHE PRO GLY ILE PRO LYS TRP ARG LYS THR SEQRES 2 B 173 HIS LEU THR TYR ARG ILE VAL ASN TYR THR PRO ASP LEU SEQRES 3 B 173 PRO LYS ASP ALA VAL ASP SER ALA VAL GLU LYS ALA LEU SEQRES 4 B 173 LYS VAL TRP GLU GLU VAL THR PRO LEU THR PHE SER ARG SEQRES 5 B 173 LEU TYR GLU GLY GLU ALA ASP ILE MET ILE SER PHE ALA SEQRES 6 B 173 VAL ARG GLU HIS GLY ASP PHE TYR PRO PHE ASP GLY PRO SEQRES 7 B 173 GLY ASN VAL LEU ALA HIS ALA TYR ALA PRO GLY PRO GLY SEQRES 8 B 173 ILE ASN GLY ASP ALA HIS PHE ASP ASP ASP GLU GLN TRP SEQRES 9 B 173 THR LYS ASP THR THR GLY THR ASN LEU PHE LEU VAL ALA SEQRES 10 B 173 ALA HIS GLU ILE GLY HIS SER LEU GLY LEU PHE HIS SER SEQRES 11 B 173 ALA ASN THR GLU ALA LEU MET TYR PRO LEU TYR HIS SER SEQRES 12 B 173 LEU THR ASP LEU THR ARG PHE ARG LEU SER GLN ASP ASP SEQRES 13 B 173 ILE ASN GLY ILE GLN SER LEU TYR GLY PRO PRO PRO ASP SEQRES 14 B 173 SER PRO GLU THR HET ZN A 301 1 HET ZN A 302 1 HET CA A 303 1 HET CA A 304 1 HET CA A 305 1 HET ZN B 301 1 HET ZN B 302 1 HET CA B 303 1 HET CA B 304 1 HET CA B 305 1 HET N25 B 401 34 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM N25 1,3-BIS-(4-METHOXY-BENZENESULFONYL)-5,5-DIMETHYL- HETNAM 2 N25 HEXAHYDRO-PYRIMIDINE-2-CARBOXYLIC ACID HYDROXYAMIDE FORMUL 3 ZN 4(ZN 2+) FORMUL 5 CA 6(CA 2+) FORMUL 13 N25 C21 H27 N3 O8 S2 FORMUL 14 HOH *75(H2 O) HELIX 1 1 LYS A 110 VAL A 127 1 18 HELIX 2 2 LEU A 195 LEU A 207 1 13 HELIX 3 3 GLN A 236 TYR A 246 1 11 HELIX 4 4 LYS B 110 VAL B 127 1 18 HELIX 5 5 LEU B 195 LEU B 207 1 13 HELIX 6 6 GLN B 236 TYR B 246 1 11 SHEET 1 A 5 THR A 131 ARG A 134 0 SHEET 2 A 5 HIS A 96 ILE A 101 1 N LEU A 97 O THR A 131 SHEET 3 A 5 ILE A 142 ALA A 147 1 N ILE A 142 O ARG A 100 SHEET 4 A 5 ALA A 178 ASP A 181 1 N ALA A 178 O SER A 145 SHEET 5 A 5 ALA A 165 ALA A 167 -1 N HIS A 166 O HIS A 179 SHEET 1 B 5 THR B 131 ARG B 134 0 SHEET 2 B 5 HIS B 96 ILE B 101 1 N LEU B 97 O THR B 131 SHEET 3 B 5 ILE B 142 ALA B 147 1 N ILE B 142 O ARG B 100 SHEET 4 B 5 ALA B 178 ASP B 181 1 N ALA B 178 O SER B 145 SHEET 5 B 5 ALA B 165 ALA B 167 -1 N HIS B 166 O HIS B 179 LINK ZN ZN A 301 NE2 HIS A 201 1555 1555 2.25 LINK ZN ZN A 301 NE2 HIS A 205 1555 1555 2.26 LINK ZN ZN A 301 NE2 HIS A 211 1555 1555 2.11 LINK ZN ZN A 302 NE2 HIS A 151 1555 1555 2.09 LINK ZN ZN A 302 OD2 ASP A 153 1555 1555 1.96 LINK ZN ZN A 302 NE2 HIS A 166 1555 1555 2.12 LINK ZN ZN A 302 ND1 HIS A 179 1555 1555 2.12 LINK CA CA A 303 O GLY A 159 1555 1555 2.24 LINK CA CA A 303 O VAL A 163 1555 1555 2.26 LINK CA CA A 303 OD2 ASP A 181 1555 1555 2.27 LINK CA CA A 303 OE2 GLU A 184 1555 1555 2.30 LINK CA CA A 304 OD2 ASP A 107 1555 1555 2.30 LINK CA CA A 304 O ASP A 182 1555 1555 2.21 LINK CA CA A 304 O GLU A 184 1555 1555 2.38 LINK CA CA A 305 O GLY A 173 1555 1555 2.30 LINK CA CA A 305 O ASN A 175 1555 1555 2.25 LINK ZN ZN B 301 NE2 HIS B 201 1555 1555 2.25 LINK ZN ZN B 301 NE2 HIS B 205 1555 1555 2.26 LINK ZN ZN B 301 NE2 HIS B 211 1555 1555 2.32 LINK ZN ZN B 301 O24 N25 B 401 1555 1555 1.98 LINK ZN ZN B 301 O26 N25 B 401 1555 1555 1.87 LINK ZN ZN B 302 NE2 HIS B 151 1555 1555 2.21 LINK ZN ZN B 302 OD2 ASP B 153 1555 1555 1.89 LINK ZN ZN B 302 NE2 HIS B 166 1555 1555 2.05 LINK ZN ZN B 302 ND1 HIS B 179 1555 1555 2.06 LINK CA CA B 303 OD1 ASP B 158 1555 1555 2.36 LINK CA CA B 303 O GLY B 159 1555 1555 2.12 LINK CA CA B 303 O GLY B 161 1555 1555 2.33 LINK CA CA B 303 OD2 ASP B 181 1555 1555 2.31 LINK CA CA B 303 OE2 GLU B 184 1555 1555 2.27 LINK CA CA B 304 OD1 ASP B 107 1555 1555 2.36 LINK CA CA B 304 OD2 ASP B 107 1555 1555 2.38 LINK CA CA B 304 O ASP B 182 1555 1555 2.30 LINK CA CA B 305 O ASP B 141 1555 1555 2.34 LINK CA CA B 305 O GLY B 173 1555 1555 2.32 LINK CA CA B 305 O ASN B 175 1555 1555 2.34 LINK CA CA B 305 OD1 ASP B 177 1555 1555 2.28 LINK CA CA B 305 O HOH B 402 1555 1555 2.37 LINK CA CA A 303 OD1 ASP A 158 1555 1555 2.44 LINK CA CA A 303 O GLY A 161 1555 1555 2.41 LINK CA CA A 304 O HOH A 342 1555 1555 2.74 LINK CA CA A 304 OD1 ASP A 107 1555 1555 2.69 LINK CA CA A 304 OD1 ASP A 182 1555 1555 2.64 LINK CA CA A 305 O HOH A 314 1555 1555 2.70 LINK CA CA A 305 OD1 ASP A 177 1555 1555 2.43 LINK CA CA A 305 O ASP A 141 1555 1555 2.50 LINK CA CA B 303 N GLY B 161 1555 1555 3.36 LINK CA CA B 303 O VAL B 163 1555 1555 2.42 LINK CA CA B 304 O HOH B 409 1555 1555 2.54 LINK CA CA B 304 O GLU B 184 1555 1555 2.55 LINK CA CA B 304 OD1 ASP B 182 1555 1555 2.56 LINK ZN ZN A 301 O THR B 255 1555 2464 1.98 LINK ZN ZN A 301 OXT THR B 255 1555 2464 2.10 SITE 1 AC1 4 HIS A 201 HIS A 205 HIS A 211 THR B 255 SITE 1 AC2 4 HIS A 151 ASP A 153 HIS A 166 HIS A 179 SITE 1 AC3 6 ASP A 158 GLY A 159 GLY A 161 VAL A 163 SITE 2 AC3 6 ASP A 181 GLU A 184 SITE 1 AC4 4 ASP A 107 ASP A 182 GLU A 184 HOH A 342 SITE 1 AC5 5 ASP A 141 GLY A 173 ASN A 175 ASP A 177 SITE 2 AC5 5 HOH A 314 SITE 1 AC6 4 HIS B 201 HIS B 205 HIS B 211 N25 B 401 SITE 1 AC7 4 HIS B 151 ASP B 153 HIS B 166 HIS B 179 SITE 1 AC8 6 ASP B 158 GLY B 159 GLY B 161 VAL B 163 SITE 2 AC8 6 ASP B 181 GLU B 184 SITE 1 AC9 4 ASP B 107 ASP B 182 GLU B 184 HOH B 409 SITE 1 BC1 5 ASP B 141 GLY B 173 ASN B 175 ASP B 177 SITE 2 BC1 5 HOH B 402 SITE 1 BC2 11 ASN B 162 VAL B 163 LEU B 164 ALA B 165 SITE 2 BC2 11 HIS B 166 VAL B 198 HIS B 201 GLU B 202 SITE 3 BC2 11 HIS B 205 HIS B 211 ZN B 301 CRYST1 37.900 79.000 106.100 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026385 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012658 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009425 0.00000