HEADER SH2 DOMAIN 18-NOV-97 1BFI TITLE SOLUTION STRUCTURE OF THE C-TERMINAL SH2 DOMAIN OF THE P85ALPHA TITLE 2 REGULATORY SUBUNIT OF PHOSPHOINOSITIDE 3-KINASE, NMR, 30 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: P85 ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C TERMINAL SH2 DOMAIN; COMPND 5 SYNONYM: PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY ALPHA SUBUNIT, PI3- COMPND 6 KINASE P85-ALPHA SUBUNIT; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 CELL_LINE: BL21; SOURCE 6 ORGAN: BRAIN; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET-23D; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: BL21 KEYWDS SH2 DOMAIN, P85ALPHA, PI 3-KINASE, C TERMINAL SH2 DOMAIN EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR G.SIEGAL,B.DAVIS,S.M.KRISTENSEN,A.SANKAR,J.LINACRE,R.C.STEIN, AUTHOR 2 G.PANAYOTOU,M.D.WATERFIELD,P.C.DRISCOLL REVDAT 3 16-FEB-22 1BFI 1 REMARK REVDAT 2 24-FEB-09 1BFI 1 VERSN REVDAT 1 25-FEB-98 1BFI 0 JRNL AUTH G.SIEGAL,B.DAVIS,S.M.KRISTENSEN,A.SANKAR,J.LINACRE, JRNL AUTH 2 R.C.STEIN,G.PANAYOTOU,M.D.WATERFIELD,P.C.DRISCOLL JRNL TITL SOLUTION STRUCTURE OF THE C-TERMINAL SH2 DOMAIN OF THE P85 JRNL TITL 2 ALPHA REGULATORY SUBUNIT OF PHOSPHOINOSITIDE 3-KINASE. JRNL REF J.MOL.BIOL. V. 276 461 1998 JRNL REFN ISSN 0022-2836 JRNL PMID 9512716 JRNL DOI 10.1006/JMBI.1997.1562 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.84 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 30 CONFORMERS WERE DETERMINED BY REMARK 3 RESTRAINED MOLECULAR DYNAMICS/SIMULATED ANNEALING METHOD USING REMARK 3 THE PROGRAM X-PLOR 3.84. THE STRUCTURES ARE BASED ON 1908 REMARK 3 INTERPROTON DISTANCE RESTRAINTS DERIVED FROM NOE MEASUREMENTS; REMARK 3 88 HYDROGEN-BONDING DISTANCE RESTRAINTS FOR 44 HYDROGEN-BONDS REMARK 3 IDENTIFIED ON THE BASIS OF THE NOE AND AMIDE PROTON EXCHANGE REMARK 3 DATA; 25 TORSION ANGLE RESTRAINTS DERIVED FROM COUPLING REMARK 3 CONSTANTS AND NOE DATA. THE RMS DISTRIBUTION ABOUT THE MEAN REMARK 3 COORDINATE POSITIONS IS 0.57 ANGSTROMS FOR ALL BACKBONE ATOMS REMARK 3 AND 1.12 ANGSTROMS FOR ALL ATOMS. THE AVERAGE STRUCTURE WAS THEN REMARK 3 CALCULATED BY BEST FIT SUPERPOSITION, COORDINATE AVERAGING AND REMARK 3 RESTRAINED ENERGY MINIMIZATION. REMARK 4 REMARK 4 1BFI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171693. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 290 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 50 MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : VARIOUS REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XPLOR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : NO NOE VIOLATION > 0.3A, NO REMARK 210 DIHEDRAL VIOLATION > 3.0 REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-30 REMARK 465 RES C SSSEQI REMARK 465 MET A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLU A 70 OD1 ASN A 73 1.33 REMARK 500 O TRP A 11 H VAL A 35 1.49 REMARK 500 O LEU A 90 H HIS A 93 1.56 REMARK 500 O ALA A 21 H LEU A 25 1.59 REMARK 500 O GLU A 70 O ASN A 73 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 12 ARG A 110 CZ ARG A 110 NH2 0.678 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 12 ARG A 110 NH1 - CZ - NH2 ANGL. DEV. = -25.2 DEGREES REMARK 500 12 ARG A 110 NE - CZ - NH2 ANGL. DEV. = 25.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 39 -77.45 85.19 REMARK 500 1 ALA A 63 -35.78 -37.55 REMARK 500 1 TYR A 66 -8.17 -168.07 REMARK 500 1 ALA A 69 97.05 176.80 REMARK 500 1 ASN A 94 7.73 58.22 REMARK 500 1 SER A 96 15.48 -156.95 REMARK 500 1 LEU A 97 73.91 -101.62 REMARK 500 1 LEU A 101 95.57 -52.43 REMARK 500 2 SER A 39 131.03 97.86 REMARK 500 2 LYS A 40 -143.77 62.32 REMARK 500 2 ASP A 51 -17.17 -49.97 REMARK 500 2 GLU A 53 -165.53 -163.22 REMARK 500 2 TYR A 66 30.80 -64.44 REMARK 500 2 TYR A 75 175.02 60.58 REMARK 500 2 VAL A 91 -33.75 -36.66 REMARK 500 2 ASP A 95 -24.35 -35.98 REMARK 500 3 SER A 39 -37.58 112.76 REMARK 500 3 GLN A 41 -16.95 -47.94 REMARK 500 3 ASP A 51 24.28 40.88 REMARK 500 3 TYR A 66 -178.95 46.75 REMARK 500 3 PHE A 68 -58.80 -131.20 REMARK 500 3 ASN A 73 141.75 64.02 REMARK 500 3 LEU A 74 -118.15 -74.17 REMARK 500 3 VAL A 91 -75.24 12.31 REMARK 500 3 GLN A 92 -175.98 62.63 REMARK 500 3 ASP A 95 14.60 60.00 REMARK 500 3 LEU A 97 36.57 -96.58 REMARK 500 4 ARG A 36 -141.91 -146.11 REMARK 500 4 SER A 39 -43.47 101.97 REMARK 500 4 ASP A 51 -18.30 -49.30 REMARK 500 4 TYR A 66 177.62 56.66 REMARK 500 4 LEU A 74 84.20 43.60 REMARK 500 4 GLN A 92 -36.63 -38.58 REMARK 500 4 ASN A 94 9.71 44.28 REMARK 500 4 SER A 96 4.64 -151.61 REMARK 500 4 LEU A 97 70.68 -100.47 REMARK 500 4 VAL A 99 -177.81 -174.06 REMARK 500 5 SER A 39 -17.20 99.71 REMARK 500 5 ASP A 51 20.52 48.44 REMARK 500 5 ALA A 63 -81.40 54.29 REMARK 500 5 TYR A 66 -163.51 -169.55 REMARK 500 5 VAL A 91 -53.20 -9.23 REMARK 500 5 GLN A 92 146.49 -36.41 REMARK 500 5 HIS A 93 -120.13 103.94 REMARK 500 6 SER A 39 -51.42 61.09 REMARK 500 6 GLN A 41 -173.60 85.25 REMARK 500 6 ASP A 51 60.14 -65.48 REMARK 500 6 THR A 62 55.66 -140.43 REMARK 500 6 ALA A 63 -47.29 63.40 REMARK 500 6 TYR A 66 -11.07 -168.32 REMARK 500 REMARK 500 THIS ENTRY HAS 301 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BFJ RELATED DB: PDB DBREF 1BFI A 1 111 UNP P23727 P85A_BOVIN 614 724 SEQRES 1 A 112 MET GLU ASP LEU PRO HIS HIS ASP GLU LYS THR TRP ASN SEQRES 2 A 112 VAL GLY SER SER ASN ARG ASN LYS ALA GLU ASN LEU LEU SEQRES 3 A 112 ARG GLY LYS ARG ASP GLY THR PHE LEU VAL ARG GLU SER SEQRES 4 A 112 SER LYS GLN GLY CYS TYR ALA CYS SER VAL VAL VAL ASP SEQRES 5 A 112 GLY GLU VAL LYS HIS CYS VAL ILE ASN LYS THR ALA THR SEQRES 6 A 112 GLY TYR GLY PHE ALA GLU PRO TYR ASN LEU TYR SER SER SEQRES 7 A 112 LEU LYS GLU LEU VAL LEU HIS TYR GLN HIS THR SER LEU SEQRES 8 A 112 VAL GLN HIS ASN ASP SER LEU ASN VAL THR LEU ALA TYR SEQRES 9 A 112 PRO VAL TYR ALA GLN GLN ARG ARG HELIX 1 1 PRO A 4 HIS A 6 5 3 HELIX 2 2 GLU A 8 TRP A 11 1 4 HELIX 3 3 ARG A 18 LEU A 25 1 8 HELIX 4 4 LEU A 78 HIS A 87 1 10 HELIX 5 5 LEU A 90 ASP A 95 5 6 SHEET 1 A 3 PHE A 33 GLU A 37 0 SHEET 2 A 3 TYR A 44 VAL A 49 -1 N SER A 47 O LEU A 34 SHEET 3 A 3 VAL A 54 ILE A 59 -1 N ILE A 59 O TYR A 44 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20 MODEL 21 MODEL 22 MODEL 23 MODEL 24 MODEL 25 MODEL 26 MODEL 27 MODEL 28 MODEL 29 MODEL 30