HEADER PEROXIDASE 16-MAY-98 1BES TITLE INTERACTION BETWEEN PROXIMAL AND DISTALS REGIONS OF CYTOCHROME C TITLE 2 PEROXIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C PEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.11.1.5; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: FE(III)-CL COMPLEX, WITH A MES (+) ZWITTERION BOUND IN COMPND 8 THE PROXIMAL REGION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PUC8 KEYWDS PEROXIDASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.MILLER,J.KRAUT REVDAT 3 14-MAR-18 1BES 1 SEQADV REVDAT 2 24-FEB-09 1BES 1 VERSN REVDAT 1 21-OCT-98 1BES 0 JRNL AUTH M.A.MILLER,G.W.HAN,J.KRAUT JRNL TITL INTERACTION BETWEEN PROXIMAL AND DISTALS REGIONS OF JRNL TITL 2 CYTOCHROME C PEROXIDASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.M.FITZGERALD,R.A.MUSAH,D.E.MCREE,D.B.GOODIN REMARK 1 TITL A LIGAND-GATED, HINGED LOOP REARRANGEMENT OPENS A CHANNEL TO REMARK 1 TITL 2 A BURIED ARTIFICIAL PROTEIN CAVITY REMARK 1 REF NAT.STRUCT.BIOL. V. 3 626 1996 REMARK 1 REFN ISSN 1072-8368 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.A.MILLER,G.W.HAN,J.KRAUT REMARK 1 TITL A CATION BINDING MOTIF STABILIZES THE COMPOUND I RADICAL OF REMARK 1 TITL 2 CYTOCHROME C PEROXIDASE REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 91 11118 1994 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.M.WANG,M.MAURO,S.L.EDWARDS,S.J.OATLEY,L.A.FISHEL, REMARK 1 AUTH 2 V.A.ASHFORD,N.H.XUONG,J.KRAUT REMARK 1 TITL X-RAY STRUCTURES OF RECOMBINANT YEAST CYTOCHROME C REMARK 1 TITL 2 PEROXIDASE AND THREE HEME-CLEFT MUTANTS PREPARED BY REMARK 1 TITL 3 SITE-DIRECTED MUTAGENESIS REMARK 1 REF BIOCHEMISTRY V. 29 7160 1990 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 4 REMARK 1 AUTH L.A.FISHEL,J.E.VILLAFRANCA,J.M.MAURO,J.KRAUT REMARK 1 TITL YEAST CYTOCHROME C PEROXIDASE: MUTAGENESIS AND EXPRESSION IN REMARK 1 TITL 2 ESCHERICHIA COLI SHOW TRYPTOPHAN-51 IS NOT THE RADICAL SITE REMARK 1 TITL 3 IN COMPOUND I REMARK 1 REF BIOCHEMISTRY V. 26 351 1987 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 5 REMARK 1 AUTH B.C.FINZEL,T.L.POULOS,J.KRAUT REMARK 1 TITL CRYSTAL STRUCTURE OF YEAST CYTOCHROME C PEROXIDASE REFINED REMARK 1 TITL 2 AT 1.7-A RESOLUTION REMARK 1 REF J.BIOL.CHEM. V. 259 13027 1984 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 1 REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 21970 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1910 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2324 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.009 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.317 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : 17.460; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.009 ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : 0.007 ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 4.360 ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : 0.021 ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT PROTGEO REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : TNT BCORREL.DAT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 RESTRAINTS WERE RELAXED FOR PLANARITY OF THE BACKBONE UNITS FOR REMARK 3 RESIDUES 191-195, OTHERWISE THE DENSITY COULD NOT BE MODELLED REMARK 3 PROPERLY. REMARK 3 REMARK 3 THE PLANARITY OF THE PEPTIDE BOND WAS RELAXED FOR RESIDUES REMARK 3 190-194 BECAUSE IT WAS THE ONLY WAY THE MODEL COULD BE REMARK 3 FITTED INTO THE DENSITY. THE DENSITY WAS CONTINUOUS REMARK 3 THROUGH THIS REGION, AND SO THE AUTHORS CHOSE TO MODEL REMARK 3 INTO THE DENSITY RATHER THAN TO PRESERVE THE REQUIREMENT REMARK 3 FOR PLANARITY OF OMEGA. REMARK 3 REMARK 3 COORDINATES FOR RESIDUES -1, 0, AND 1 - 3 ARE NOT INCLUDED REMARK 3 IN THIS ENTRY BECAUSE THESE RESIDUES COULD NOT BE RESOLVED REMARK 3 IN THE FINAL ELECTRON DENSITY MAPS. WATER MOLECULES WITH REMARK 3 B-FACTORS GREATER THAN 80 WERE NOT INCLUDED IN THE MODEL. REMARK 4 REMARK 4 1BES COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171670. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NOV-97 REMARK 200 TEMPERATURE (KELVIN) : 273 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21914 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% MPD, 20 MM TRIS/MES PH 6.0, 150 MM REMARK 280 NACL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.64750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.55350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.12800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 22.55350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.64750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.12800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE MUTATION INFLUENCES THE COORDINATION STATE OF THE REMARK 400 ENZYME. THE BINDING OF MES FROM BUFFER TENDS TO PROMOTE REMARK 400 ANION BINDING AT THE IRON. THE INCREASED AFFINITY FOR REMARK 400 ANIONS CAUSES CL TO BIND AT IRON, CREATING A 6C-HS REMARK 400 FERRIC HEME. REMARK 400 REMARK 400 THE TRP 191 TO TYR SUBSTITUTION CREATES AN UNSTABLE REMARK 400 CONFORMATION OF THE 191 LOOP. THE ORIENTATION OF TYR 191 REMARK 400 CAN ALLOW K+ BINDING IN KPO4 BUFFER. IN MES BUFFER REMARK 400 (THIS STRUCTURE), THE 191 LOOP ROTATES TOWARD THE REMARK 400 MOLECULAR SURFACE, AND A MES MOLECULE TO BIND TO THE REMARK 400 RESULTING CAVITY. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 35 CD OE1 OE2 REMARK 470 TYR A 39 CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 75 CD CE NZ REMARK 470 GLN A 86 CD OE1 NE2 REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 ASP A 136 CB CG OD1 OD2 REMARK 470 LYS A 183 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 17 CD GLU A 17 OE1 0.080 REMARK 500 GLU A 76 CD GLU A 76 OE1 0.068 REMARK 500 GLU A 98 CD GLU A 98 OE1 0.079 REMARK 500 GLU A 118 CD GLU A 118 OE1 0.068 REMARK 500 GLU A 188 CD GLU A 188 OE2 0.070 REMARK 500 GLU A 209 CD GLU A 209 OE2 0.070 REMARK 500 GLU A 250 CD GLU A 250 OE2 0.068 REMARK 500 GLU A 290 CD GLU A 290 OE1 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 34 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 34 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 58 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 58 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG A 127 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 127 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 130 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 132 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 132 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 150 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 150 CB - CG - OD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ASN A 162 CA - CB - CG ANGL. DEV. = -13.4 DEGREES REMARK 500 ASP A 165 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 165 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 235 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP A 254 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 254 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP A 256 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 261 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 261 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 272 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 272 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP A 279 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 PHE A 284 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 148 36.43 -89.00 REMARK 500 ALA A 193 -107.72 4.75 REMARK 500 ALA A 194 140.36 44.23 REMARK 500 ASN A 196 34.50 -144.73 REMARK 500 SER A 227 -3.99 -59.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 191 GLY A 192 -92.61 REMARK 500 GLY A 192 ALA A 193 91.92 REMARK 500 ALA A 193 ALA A 194 -139.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 296 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CL A 595 CL REMARK 620 2 HEM A 296 NA 77.8 REMARK 620 3 HEM A 296 NB 84.6 89.6 REMARK 620 4 HEM A 296 NC 102.8 179.4 90.5 REMARK 620 5 HEM A 296 ND 91.5 87.4 175.5 92.6 REMARK 620 6 HIS A 175 NE2 173.3 96.1 92.7 83.3 91.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 595 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 975 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CCP RELATED DB: PDB REMARK 900 NATIVE REMARK 900 RELATED ID: 2CCP RELATED DB: PDB REMARK 900 D235N REMARK 900 RELATED ID: 3CCP RELATED DB: PDB REMARK 900 W191F REMARK 900 RELATED ID: 4CCP RELATED DB: PDB REMARK 900 W51F REMARK 900 RELATED ID: 1CPD RELATED DB: PDB REMARK 900 RELATED ID: 1CPE RELATED DB: PDB REMARK 900 RELATED ID: 1CPF RELATED DB: PDB REMARK 900 RELATED ID: 1CPG RELATED DB: PDB REMARK 900 RELATED ID: 1BEJ RELATED DB: PDB REMARK 900 RELATED ID: 1BEM RELATED DB: PDB REMARK 900 RELATED ID: 1BEQ RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CYTOCHROME C PEROXIDASE DIFFERS FROM A PREVIOUSLY REMARK 999 DEPOSITED STRUCTURE (PROTEIN DATA BANK ENTRY 2CYP) BY REMARK 999 TWO STRAIN-RELATED SEQUENCE DIFFERENCES: THR 53 TO ILE REMARK 999 AND ASP 152 TO GLY, AND THE ADDITION OF MET-ILE AT THE REMARK 999 N-TERMINUS, HENCE CCP(MI). THE OVERALL STRUCTURE IS THE REMARK 999 SAME AS THE PREVIOUSLY DEPOSITED ONE BUT IN A DIFFERENT REMARK 999 PACKING. REMARK 999 REMARK 999 THE SEQUENCE DIFFERS FROM THAT REPORTED FOR 2CYP AT RESIDUE REMARK 999 272. IN THE PRESENT ENTRY, THIS RESIDUE IS REPORTED AS REMARK 999 ASN. THIS CORRECTS AN ERROR INTRODUCED IN 2CYP, WHERE THE REMARK 999 RESIDUE IS INCORRECTLY REPORTED TO BE ASP. REMARK 999 REMARK 999 RESIDUES ARE NUMBERED TO BE CONSISTENT WITH THE SEQUENCE OF REMARK 999 THE NATIVE (2CYP) STRUCTURE. THUS THE FIRST TWO RESIDUES REMARK 999 HAVE RESIDUE NUMBERS -1 AND 0, RESPECTIVELY. DBREF 1BES A 4 294 UNP P00431 CCPR_YEAST 71 361 SEQADV 1BES ILE A 53 UNP P00431 THR 120 ENGINEERED MUTATION SEQADV 1BES GLY A 152 UNP P00431 ASP 219 ENGINEERED MUTATION SEQADV 1BES TYR A 191 UNP P00431 TRP 258 ENGINEERED MUTATION SEQADV 1BES ASP A 272 UNP P00431 ASN 339 ENGINEERED MUTATION SEQRES 1 A 291 LEU VAL HIS VAL ALA SER VAL GLU LYS GLY ARG SER TYR SEQRES 2 A 291 GLU ASP PHE GLN LYS VAL TYR ASN ALA ILE ALA LEU LYS SEQRES 3 A 291 LEU ARG GLU ASP ASP GLU TYR ASP ASN TYR ILE GLY TYR SEQRES 4 A 291 GLY PRO VAL LEU VAL ARG LEU ALA TRP HIS ILE SER GLY SEQRES 5 A 291 THR TRP ASP LYS HIS ASP ASN THR GLY GLY SER TYR GLY SEQRES 6 A 291 GLY THR TYR ARG PHE LYS LYS GLU PHE ASN ASP PRO SER SEQRES 7 A 291 ASN ALA GLY LEU GLN ASN GLY PHE LYS PHE LEU GLU PRO SEQRES 8 A 291 ILE HIS LYS GLU PHE PRO TRP ILE SER SER GLY ASP LEU SEQRES 9 A 291 PHE SER LEU GLY GLY VAL THR ALA VAL GLN GLU MET GLN SEQRES 10 A 291 GLY PRO LYS ILE PRO TRP ARG CYS GLY ARG VAL ASP THR SEQRES 11 A 291 PRO GLU ASP THR THR PRO ASP ASN GLY ARG LEU PRO ASP SEQRES 12 A 291 ALA ASP LYS ASP ALA GLY TYR VAL ARG THR PHE PHE GLN SEQRES 13 A 291 ARG LEU ASN MET ASN ASP ARG GLU VAL VAL ALA LEU MET SEQRES 14 A 291 GLY ALA HIS ALA LEU GLY LYS THR HIS LEU LYS ASN SER SEQRES 15 A 291 GLY TYR GLU GLY PRO TYR GLY ALA ALA ASN ASN VAL PHE SEQRES 16 A 291 THR ASN GLU PHE TYR LEU ASN LEU LEU ASN GLU ASP TRP SEQRES 17 A 291 LYS LEU GLU LYS ASN ASP ALA ASN ASN GLU GLN TRP ASP SEQRES 18 A 291 SER LYS SER GLY TYR MET MET LEU PRO THR ASP TYR SER SEQRES 19 A 291 LEU ILE GLN ASP PRO LYS TYR LEU SER ILE VAL LYS GLU SEQRES 20 A 291 TYR ALA ASN ASP GLN ASP LYS PHE PHE LYS ASP PHE SER SEQRES 21 A 291 LYS ALA PHE GLU LYS LEU LEU GLU ASP GLY ILE THR PHE SEQRES 22 A 291 PRO LYS ASP ALA PRO SER PRO PHE ILE PHE LYS THR LEU SEQRES 23 A 291 GLU GLU GLN GLY LEU HET CL A 595 1 HET HEM A 296 43 HET MES A 975 12 HETNAM CL CHLORIDE ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN HEM HEME FORMUL 2 CL CL 1- FORMUL 3 HEM C34 H32 FE N4 O4 FORMUL 4 MES C6 H13 N O4 S FORMUL 5 HOH *169(H2 O) HELIX 1 1 TYR A 16 GLU A 32 1 17 HELIX 2 2 TYR A 36 TYR A 39 1 4 HELIX 3 3 GLY A 43 SER A 54 1 12 HELIX 4 4 THR A 70 ARG A 72 5 3 HELIX 5 5 LYS A 74 PHE A 77 1 4 HELIX 6 6 PRO A 80 ASN A 82 5 3 HELIX 7 7 LEU A 85 GLU A 98 5 14 HELIX 8 8 SER A 104 GLU A 118 1 15 HELIX 9 9 GLU A 135 THR A 137 5 3 HELIX 10 10 ALA A 151 LEU A 161 1 11 HELIX 11 11 ASP A 165 ALA A 176 1 12 HELIX 12 12 LEU A 182 SER A 185 1 4 HELIX 13 13 GLU A 201 ASN A 208 1 8 HELIX 14 14 PRO A 233 GLN A 240 1 8 HELIX 15 15 PRO A 242 ASN A 253 1 12 HELIX 16 16 GLN A 255 GLU A 271 1 17 HELIX 17 17 LEU A 289 GLN A 292 1 4 SHEET 1 A 2 TRP A 211 LYS A 215 0 SHEET 2 A 2 GLU A 221 SER A 225 -1 N ASP A 224 O LYS A 212 LINK CL CL A 595 FE HEM A 296 1555 1555 2.19 LINK FE HEM A 296 NE2 HIS A 175 1555 1555 2.07 CISPEP 1 GLY A 189 PRO A 190 0 1.83 SITE 1 AC1 6 ARG A 48 TRP A 51 HIS A 52 HEM A 296 SITE 2 AC1 6 HOH A 596 HOH A 648 SITE 1 AC2 19 PRO A 44 ARG A 48 TRP A 51 PRO A 145 SITE 2 AC2 19 ASP A 146 LEU A 171 ALA A 174 HIS A 175 SITE 3 AC2 19 LEU A 177 GLY A 178 LYS A 179 THR A 180 SITE 4 AC2 19 HIS A 181 ASN A 184 SER A 185 HOH A 348 SITE 5 AC2 19 CL A 595 HOH A 895 HOH A 896 SITE 1 AC3 11 HIS A 175 LEU A 177 GLY A 178 THR A 180 SITE 2 AC3 11 PRO A 190 ASN A 205 TYR A 229 MET A 230 SITE 3 AC3 11 MET A 231 HOH A 712 HOH A 977 CRYST1 105.295 74.256 45.107 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009497 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013467 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022170 0.00000