HEADER HYDROLASE/PROTEIN BINDING 23-MAR-19 6OCF TITLE THE CRYSTAL STRUCTURE OF VASH1-SVBP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUBULINYL-TYR CARBOXYPEPTIDASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TUBULIN CARBOXYPEPTIDASE 1,TYROSINE CARBOXYPEPTIDASE 1,TTCP COMPND 5 1,VASOHIBIN-1; COMPND 6 EC: 3.4.17.17; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SMALL VASOHIBIN-BINDING PROTEIN; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: COILED COIL DOMAIN-CONTAINING PROTEIN 23; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VASH1, KIAA1036, VASH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: SVBP, CCDC23; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS TUBULIN CARBOXYPEPTIDASES, MICROTUBULE MODIFICATION, TUBULIN KEYWDS 2 DETYROSINATION, VASH1-SVBP COMPLEX, HYDROLASE-PROTEIN BINDING KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.LI,X.LUO,H.YU REVDAT 4 18-DEC-19 6OCF 1 REMARK REVDAT 3 17-JUL-19 6OCF 1 JRNL REVDAT 2 10-JUL-19 6OCF 1 JRNL REVDAT 1 26-JUN-19 6OCF 0 JRNL AUTH F.LI,Y.HU,S.QI,X.LUO,H.YU JRNL TITL STRUCTURAL BASIS OF TUBULIN DETYROSINATION BY VASOHIBINS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 26 583 2019 JRNL REFN ESSN 1545-9985 JRNL PMID 31235910 JRNL DOI 10.1038/S41594-019-0242-X REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.1 REMARK 3 NUMBER OF REFLECTIONS : 48368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2405 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.2242 - 5.4024 1.00 3302 170 0.1904 0.2235 REMARK 3 2 5.4024 - 4.2891 1.00 3304 168 0.1577 0.1762 REMARK 3 3 4.2891 - 3.7473 1.00 3275 170 0.1522 0.1478 REMARK 3 4 3.7473 - 3.4048 1.00 3313 176 0.1673 0.2228 REMARK 3 5 3.4048 - 3.1608 1.00 3261 172 0.1833 0.2260 REMARK 3 6 3.1608 - 2.9745 1.00 3315 174 0.1891 0.2020 REMARK 3 7 2.9745 - 2.8255 1.00 3292 177 0.1967 0.2285 REMARK 3 8 2.8255 - 2.7026 1.00 3267 171 0.2111 0.2329 REMARK 3 9 2.7026 - 2.5985 0.99 3295 175 0.2257 0.2472 REMARK 3 10 2.5985 - 2.5089 0.96 3152 167 0.2388 0.2649 REMARK 3 11 2.5089 - 2.4304 0.89 2939 156 0.2498 0.2977 REMARK 3 12 2.4304 - 2.3610 0.76 2517 129 0.2512 0.2956 REMARK 3 13 2.3610 - 2.2988 0.67 2185 113 0.2691 0.2362 REMARK 3 14 2.2988 - 2.2427 0.57 1875 94 0.2756 0.3429 REMARK 3 15 2.2427 - 2.1917 0.48 1578 82 0.2927 0.3350 REMARK 3 16 2.1917 - 2.1451 0.38 1244 67 0.3048 0.3768 REMARK 3 17 2.1451 - 2.1022 0.26 849 44 0.3064 0.3193 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 119.4676 113.9706 21.2871 REMARK 3 T TENSOR REMARK 3 T11: 0.1864 T22: 0.3293 REMARK 3 T33: 0.1783 T12: 0.0302 REMARK 3 T13: -0.0935 T23: -0.1974 REMARK 3 L TENSOR REMARK 3 L11: 4.2269 L22: 2.1670 REMARK 3 L33: 3.5785 L12: 1.5273 REMARK 3 L13: 2.7130 L23: 0.9258 REMARK 3 S TENSOR REMARK 3 S11: 0.1155 S12: -0.3299 S13: 0.0233 REMARK 3 S21: 0.2855 S22: 0.0053 S23: -0.2752 REMARK 3 S31: -0.1019 S32: 0.1017 S33: 0.0083 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 62 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 88.1938 96.8174 6.4894 REMARK 3 T TENSOR REMARK 3 T11: 0.2592 T22: 0.2460 REMARK 3 T33: 0.2062 T12: 0.0821 REMARK 3 T13: -0.0492 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 9.0487 L22: 3.8954 REMARK 3 L33: 6.8896 L12: 4.9805 REMARK 3 L13: -4.9415 L23: -4.9193 REMARK 3 S TENSOR REMARK 3 S11: 0.1117 S12: 0.3980 S13: -0.9887 REMARK 3 S21: 0.0847 S22: 0.2418 S23: -0.4859 REMARK 3 S31: 0.5781 S32: -0.0570 S33: -0.3759 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 123.9703 114.8003 19.9969 REMARK 3 T TENSOR REMARK 3 T11: 0.2670 T22: 0.4727 REMARK 3 T33: 0.2302 T12: 0.0052 REMARK 3 T13: -0.0656 T23: -0.1851 REMARK 3 L TENSOR REMARK 3 L11: 0.9421 L22: 3.2908 REMARK 3 L33: 1.0876 L12: -0.7598 REMARK 3 L13: -0.0447 L23: 0.1634 REMARK 3 S TENSOR REMARK 3 S11: 0.3418 S12: -0.1153 S13: -0.1156 REMARK 3 S21: -0.0853 S22: 0.0215 S23: -0.3178 REMARK 3 S31: 0.0899 S32: 0.1935 S33: -0.0846 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): 127.7316 97.5265 6.2367 REMARK 3 T TENSOR REMARK 3 T11: -0.1073 T22: 0.3753 REMARK 3 T33: 0.4296 T12: 0.0119 REMARK 3 T13: -0.0651 T23: -0.1552 REMARK 3 L TENSOR REMARK 3 L11: 0.8993 L22: 0.9766 REMARK 3 L33: 0.3863 L12: -0.1565 REMARK 3 L13: -0.1019 L23: 0.3206 REMARK 3 S TENSOR REMARK 3 S11: 0.0914 S12: -0.1661 S13: -0.1165 REMARK 3 S21: -0.0722 S22: 0.1498 S23: -0.7582 REMARK 3 S31: -0.0258 S32: 0.3343 S33: 0.0083 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 130.5981 85.3276 -7.0656 REMARK 3 T TENSOR REMARK 3 T11: 0.5329 T22: 0.4825 REMARK 3 T33: 0.6990 T12: 0.1285 REMARK 3 T13: 0.1015 T23: -0.2513 REMARK 3 L TENSOR REMARK 3 L11: 8.0811 L22: 4.8567 REMARK 3 L33: 2.9781 L12: 1.3680 REMARK 3 L13: 0.5228 L23: 1.0672 REMARK 3 S TENSOR REMARK 3 S11: 0.1468 S12: 0.3351 S13: -0.5592 REMARK 3 S21: -0.1951 S22: 0.0909 S23: -0.3425 REMARK 3 S31: 0.4978 S32: 0.6310 S33: -0.2296 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OCF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000240449. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48368 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 24.50 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 42.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.40 REMARK 200 R MERGE FOR SHELL (I) : 2.56800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE, PH 5.0, AND 18% (W/V) PEG20000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 50.27900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 50.27900 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.36500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.27900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.68250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.27900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 155.04750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.27900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 155.04750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.27900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.68250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 50.27900 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 50.27900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 103.36500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 50.27900 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 50.27900 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 103.36500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 50.27900 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 155.04750 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 50.27900 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 51.68250 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 50.27900 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 51.68250 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 50.27900 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 155.04750 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 50.27900 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 50.27900 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 103.36500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 518 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 633 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 625 O HOH A 631 2.08 REMARK 500 O HOH A 591 O HOH A 610 2.13 REMARK 500 O HOH A 620 O HOH A 632 2.14 REMARK 500 NH2 ARG A 130 OE2 GLU A 224 2.15 REMARK 500 OE1 GLU A 131 O HOH A 501 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 61 65.67 -105.38 REMARK 500 ASN A 63 85.62 -41.42 REMARK 500 ARG A 64 174.09 -54.75 REMARK 500 GLN A 133 143.82 83.39 REMARK 500 LYS A 168 -168.04 -117.63 REMARK 500 PHE A 197 -60.49 -128.10 REMARK 500 MSE A 227 -107.91 -139.00 REMARK 500 TRP A 251 10.93 81.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 DBREF 6OCF A 58 305 UNP Q7L8A9 VASH1_HUMAN 58 305 DBREF 6OCF B 18 66 UNP Q8N300 SVBP_HUMAN 18 66 SEQRES 1 A 248 VAL PRO PHE PHE VAL ASN ARG GLY GLY LEU PRO VAL ASP SEQRES 2 A 248 GLU ALA THR TRP GLU ARG MSE TRP LYS HIS VAL ALA LYS SEQRES 3 A 248 ILE HIS PRO ASP GLY GLU LYS VAL ALA GLN ARG ILE ARG SEQRES 4 A 248 GLY ALA THR ASP LEU PRO LYS ILE PRO ILE PRO SER VAL SEQRES 5 A 248 PRO THR PHE GLN PRO SER THR PRO VAL PRO GLU ARG LEU SEQRES 6 A 248 GLU ALA VAL GLN ARG TYR ILE ARG GLU LEU GLN TYR ASN SEQRES 7 A 248 HIS THR GLY THR GLN PHE PHE GLU ILE LYS LYS SER ARG SEQRES 8 A 248 PRO LEU THR GLY LEU MSE ASP LEU ALA LYS GLU MSE THR SEQRES 9 A 248 LYS GLU ALA LEU PRO ILE LYS CYS LEU GLU ALA VAL ILE SEQRES 10 A 248 LEU GLY ILE TYR LEU THR ASN SER MSE PRO THR LEU GLU SEQRES 11 A 248 ARG PHE PRO ILE SER PHE LYS THR TYR PHE SER GLY ASN SEQRES 12 A 248 TYR PHE ARG HIS ILE VAL LEU GLY VAL ASN PHE ALA GLY SEQRES 13 A 248 ARG TYR GLY ALA LEU GLY MSE SER ARG ARG GLU ASP LEU SEQRES 14 A 248 MSE TYR LYS PRO PRO ALA PHE ARG THR LEU SER GLU LEU SEQRES 15 A 248 VAL LEU ASP PHE GLU ALA ALA TYR GLY ARG CYS TRP HIS SEQRES 16 A 248 VAL LEU LYS LYS VAL LYS LEU GLY GLN SER VAL SER HIS SEQRES 17 A 248 ASP PRO HIS SER VAL GLU GLN ILE GLU TRP LYS HIS SER SEQRES 18 A 248 VAL LEU ASP VAL GLU ARG LEU GLY ARG ASP ASP PHE ARG SEQRES 19 A 248 LYS GLU LEU GLU ARG HIS ALA ARG ASP MSE ARG LEU LYS SEQRES 20 A 248 ILE SEQRES 1 B 49 ARG VAL GLU LYS ALA LYS GLN LYS SER ALA GLN GLN GLU SEQRES 2 B 49 LEU LYS GLN ARG GLN ARG ALA GLU ILE TYR ALA LEU ASN SEQRES 3 B 49 ARG VAL MSE THR GLU LEU GLU GLN GLN GLN PHE ASP GLU SEQRES 4 B 49 PHE CYS LYS GLN MSE GLN PRO PRO GLY GLU MODRES 6OCF MSE A 77 MET MODIFIED RESIDUE MODRES 6OCF MSE A 154 MET MODIFIED RESIDUE MODRES 6OCF MSE A 160 MET MODIFIED RESIDUE MODRES 6OCF MSE A 183 MET MODIFIED RESIDUE MODRES 6OCF MSE A 220 MET MODIFIED RESIDUE MODRES 6OCF MSE A 227 MET MODIFIED RESIDUE MODRES 6OCF MSE A 301 MET MODIFIED RESIDUE MODRES 6OCF MSE B 46 MET MODIFIED RESIDUE MODRES 6OCF MSE B 61 MET MODIFIED RESIDUE HET MSE A 77 8 HET MSE A 154 8 HET MSE A 160 8 HET MSE A 183 8 HET MSE A 220 8 HET MSE A 227 8 HET MSE A 301 8 HET MSE B 46 8 HET MSE B 61 13 HET GOL A 401 14 HET CL A 402 1 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 3 GOL C3 H8 O3 FORMUL 4 CL CL 1- FORMUL 5 HOH *168(H2 O) HELIX 1 AA1 ASP A 70 HIS A 85 1 16 HELIX 2 AA2 GLY A 88 GLY A 97 1 10 HELIX 3 AA3 PRO A 117 LEU A 132 1 16 HELIX 4 AA4 PRO A 149 ALA A 164 1 16 HELIX 5 AA5 LYS A 168 ASN A 181 1 14 HELIX 6 AA6 ARG A 223 MSE A 227 5 5 HELIX 7 AA7 THR A 235 CYS A 250 1 16 HELIX 8 AA8 GLY A 286 LYS A 304 1 19 HELIX 9 AA9 VAL B 19 GLN B 62 1 44 SHEET 1 AA1 6 LYS A 229 PHE A 233 0 SHEET 2 AA1 6 ARG A 214 LEU A 218 -1 N TYR A 215 O PHE A 233 SHEET 3 AA1 6 TYR A 201 PHE A 211 -1 N LEU A 207 O LEU A 218 SHEET 4 AA1 6 LEU A 186 TYR A 196 -1 N PHE A 189 O GLY A 208 SHEET 5 AA1 6 VAL A 253 LEU A 259 -1 O LYS A 255 N LYS A 194 SHEET 6 AA1 6 SER A 278 ASP A 281 -1 O LEU A 280 N VAL A 257 LINK C ARG A 76 N MSE A 77 1555 1555 1.33 LINK C MSE A 77 N TRP A 78 1555 1555 1.35 LINK C LEU A 153 N MSE A 154 1555 1555 1.34 LINK C MSE A 154 N ASP A 155 1555 1555 1.34 LINK C GLU A 159 N MSE A 160 1555 1555 1.34 LINK C MSE A 160 N THR A 161 1555 1555 1.33 LINK C SER A 182 N MSE A 183 1555 1555 1.33 LINK C MSE A 183 N PRO A 184 1555 1555 1.34 LINK C GLY A 219 N MSE A 220 1555 1555 1.32 LINK C MSE A 220 N SER A 221 1555 1555 1.33 LINK C LEU A 226 N MSE A 227 1555 1555 1.32 LINK C MSE A 227 N TYR A 228 1555 1555 1.33 LINK C ASP A 300 N MSE A 301 1555 1555 1.33 LINK C MSE A 301 N ARG A 302 1555 1555 1.33 LINK C VAL B 45 N MSE B 46 1555 1555 1.33 LINK C MSE B 46 N THR B 47 1555 1555 1.34 LINK C GLN B 60 N MSE B 61 1555 1555 1.32 LINK C MSE B 61 N GLN B 62 1555 1555 1.33 CISPEP 1 LEU A 67 PRO A 68 0 -1.76 SITE 1 AC1 9 TYR A 134 CYS A 169 HIS A 204 SER A 221 SITE 2 AC1 9 ARG A 222 HOH A 522 HOH A 523 PRO B 64 SITE 3 AC1 9 GLY B 65 SITE 1 AC2 1 ARG A 130 CRYST1 100.558 100.558 206.730 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009945 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009945 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004837 0.00000