HEADER PROTEIN BINDING 03-JAN-19 6NJG TITLE UBIQUITIN VARIANT IN COMPLEX WITH UBIQUITIN INTERACTING MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: GOLGI RETENTION DEFECTIVE PROTEIN 11; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: POLYUBIQUITIN-B; COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 4 S288C); SOURCE 5 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 6 ORGANISM_TAXID: 559292; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: UBB; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UBIQUITIN VARIANT, UIM, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR N.MANCZYK,F.SICHERI REVDAT 4 11-OCT-23 6NJG 1 REMARK REVDAT 3 08-JAN-20 6NJG 1 REMARK REVDAT 2 24-APR-19 6NJG 1 JRNL REVDAT 1 06-MAR-19 6NJG 0 SPRSDE 06-MAR-19 6NJG 5UCL JRNL AUTH N.MANCZYK,G.VEGGIANI,G.D.GISH,B.P.YATES,A.ERNST,S.S.SIDHU, JRNL AUTH 2 F.SICHERI JRNL TITL DIMERIZATION OF A UBIQUITIN VARIANT LEADS TO HIGH AFFINITY JRNL TITL 2 INTERACTIONS WITH A UBIQUITIN INTERACTING MOTIF. JRNL REF PROTEIN SCI. V. 28 848 2019 JRNL REFN ESSN 1469-896X JRNL PMID 30793400 JRNL DOI 10.1002/PRO.3593 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3211:000) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 4747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 240 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.4319 - 2.9549 0.99 2350 125 0.1950 0.2232 REMARK 3 2 2.9549 - 2.3458 0.98 2157 115 0.2595 0.3543 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 725 REMARK 3 ANGLE : 1.251 982 REMARK 3 CHIRALITY : 0.065 120 REMARK 3 PLANARITY : 0.007 127 REMARK 3 DIHEDRAL : 3.620 454 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 255 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0183 35.9689 128.4883 REMARK 3 T TENSOR REMARK 3 T11: 0.3996 T22: 0.5757 REMARK 3 T33: 0.4852 T12: 0.1329 REMARK 3 T13: -0.0367 T23: -0.0582 REMARK 3 L TENSOR REMARK 3 L11: 0.3744 L22: 8.8134 REMARK 3 L33: 5.0777 L12: -1.9829 REMARK 3 L13: -1.4386 L23: 6.3104 REMARK 3 S TENSOR REMARK 3 S11: -0.0488 S12: -0.3921 S13: 0.3206 REMARK 3 S21: -0.4915 S22: 0.8111 S23: -1.1991 REMARK 3 S31: -0.5997 S32: 2.2607 S33: 0.0715 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9211 40.7840 149.1089 REMARK 3 T TENSOR REMARK 3 T11: 1.0657 T22: 0.4415 REMARK 3 T33: 0.4007 T12: 0.0576 REMARK 3 T13: -0.0571 T23: -0.1004 REMARK 3 L TENSOR REMARK 3 L11: 9.3434 L22: 5.5144 REMARK 3 L33: 0.9303 L12: -3.7070 REMARK 3 L13: -2.2841 L23: 2.1492 REMARK 3 S TENSOR REMARK 3 S11: -0.2761 S12: -0.6700 S13: 0.7654 REMARK 3 S21: 0.7420 S22: 0.3150 S23: -0.3101 REMARK 3 S31: -2.2293 S32: -0.6016 S33: -0.3081 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4855 38.1633 133.9432 REMARK 3 T TENSOR REMARK 3 T11: 0.5489 T22: 0.4726 REMARK 3 T33: 0.6006 T12: 0.0544 REMARK 3 T13: 0.0834 T23: -0.0659 REMARK 3 L TENSOR REMARK 3 L11: 3.6923 L22: 7.8655 REMARK 3 L33: 7.6850 L12: -3.5707 REMARK 3 L13: 3.8552 L23: -3.2453 REMARK 3 S TENSOR REMARK 3 S11: -1.3968 S12: -0.0542 S13: 1.2781 REMARK 3 S21: -0.4335 S22: 0.3344 S23: 0.3782 REMARK 3 S31: -2.3067 S32: -1.5917 S33: -0.5399 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9820 39.4382 118.7929 REMARK 3 T TENSOR REMARK 3 T11: 0.6738 T22: 0.8583 REMARK 3 T33: 0.6813 T12: -0.0107 REMARK 3 T13: -0.0475 T23: 0.1308 REMARK 3 L TENSOR REMARK 3 L11: 3.1830 L22: 8.3262 REMARK 3 L33: 2.1413 L12: -3.0615 REMARK 3 L13: 1.0728 L23: 1.1415 REMARK 3 S TENSOR REMARK 3 S11: -0.8303 S12: 1.7455 S13: 0.0749 REMARK 3 S21: 0.1409 S22: -0.5816 S23: -1.7864 REMARK 3 S31: -0.1644 S32: -1.4795 S33: -0.0549 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 16 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4764 46.1595 107.0155 REMARK 3 T TENSOR REMARK 3 T11: 0.8907 T22: 1.0173 REMARK 3 T33: 0.7577 T12: 0.3614 REMARK 3 T13: 0.3531 T23: 0.2797 REMARK 3 L TENSOR REMARK 3 L11: 7.7922 L22: 1.4401 REMARK 3 L33: 4.5487 L12: -0.9802 REMARK 3 L13: -0.7987 L23: 1.4342 REMARK 3 S TENSOR REMARK 3 S11: 1.7422 S12: 3.5175 S13: 0.7357 REMARK 3 S21: -0.7386 S22: -0.6042 S23: -0.1249 REMARK 3 S31: -0.5791 S32: -1.1294 S33: -0.0184 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 23 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3115 49.4491 117.4113 REMARK 3 T TENSOR REMARK 3 T11: 0.6150 T22: 0.6196 REMARK 3 T33: 0.5974 T12: 0.1130 REMARK 3 T13: -0.1453 T23: 0.0761 REMARK 3 L TENSOR REMARK 3 L11: 5.3561 L22: 3.9147 REMARK 3 L33: 4.7251 L12: -2.3439 REMARK 3 L13: -4.7665 L23: 1.8354 REMARK 3 S TENSOR REMARK 3 S11: 0.0445 S12: 0.3613 S13: 1.7737 REMARK 3 S21: -0.3753 S22: -0.1670 S23: 0.1129 REMARK 3 S31: -1.6976 S32: -0.6855 S33: 0.0316 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 35 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1271 47.2568 123.7447 REMARK 3 T TENSOR REMARK 3 T11: 0.8495 T22: 0.5081 REMARK 3 T33: 0.6632 T12: 0.0796 REMARK 3 T13: -0.1074 T23: -0.0756 REMARK 3 L TENSOR REMARK 3 L11: 3.5682 L22: 4.3250 REMARK 3 L33: 7.7971 L12: 0.2521 REMARK 3 L13: -3.2653 L23: 4.1894 REMARK 3 S TENSOR REMARK 3 S11: -0.5714 S12: -0.0883 S13: 1.5761 REMARK 3 S21: 1.0732 S22: 0.7316 S23: -1.2932 REMARK 3 S31: -1.1659 S32: -0.2412 S33: 0.1106 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 45 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5145 41.9503 114.0257 REMARK 3 T TENSOR REMARK 3 T11: 0.7771 T22: 0.5439 REMARK 3 T33: 0.5613 T12: -0.0051 REMARK 3 T13: 0.1115 T23: -0.0374 REMARK 3 L TENSOR REMARK 3 L11: 5.5973 L22: 4.4296 REMARK 3 L33: 4.5063 L12: -2.4664 REMARK 3 L13: -2.0606 L23: -2.2571 REMARK 3 S TENSOR REMARK 3 S11: -0.1649 S12: 0.2357 S13: 0.3362 REMARK 3 S21: -1.0159 S22: -0.3566 S23: -1.6531 REMARK 3 S31: -1.1435 S32: 0.4413 S33: -0.0806 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 57 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6254 37.1505 109.1962 REMARK 3 T TENSOR REMARK 3 T11: 0.8070 T22: 1.0669 REMARK 3 T33: 0.6718 T12: -0.0463 REMARK 3 T13: -0.0311 T23: -0.0418 REMARK 3 L TENSOR REMARK 3 L11: 1.5530 L22: 2.6470 REMARK 3 L33: 3.1688 L12: -1.8160 REMARK 3 L13: 1.0194 L23: -2.3569 REMARK 3 S TENSOR REMARK 3 S11: 0.5196 S12: 0.9887 S13: 0.3217 REMARK 3 S21: -0.7731 S22: 0.0709 S23: 0.3194 REMARK 3 S31: 0.0009 S32: -1.4620 S33: -0.4066 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 68 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4459 43.4920 128.3241 REMARK 3 T TENSOR REMARK 3 T11: 0.7273 T22: 0.6283 REMARK 3 T33: 0.6481 T12: 0.1436 REMARK 3 T13: -0.0718 T23: -0.0562 REMARK 3 L TENSOR REMARK 3 L11: 5.2468 L22: 3.6027 REMARK 3 L33: 3.3293 L12: -4.2320 REMARK 3 L13: -3.6914 L23: 2.4999 REMARK 3 S TENSOR REMARK 3 S11: 0.0966 S12: 1.1495 S13: 1.2259 REMARK 3 S21: 0.0510 S22: -0.5540 S23: 0.2074 REMARK 3 S31: -0.4183 S32: -1.3057 S33: 0.1647 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NJG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000238827. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E DW REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 2000.0.98.706 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 2000.0.98.706 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4788 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.30200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.410 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 6.5.0 REMARK 200 STARTING MODEL: 1Q0W, 1UBQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1 M DL-MALIC ACID, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.17150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 22.30650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 22.30650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.25725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 22.30650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 22.30650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.08575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 22.30650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 22.30650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 78.25725 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 22.30650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 22.30650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.08575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.17150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 44.61300 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 44.61300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 260.85750 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 17 REMARK 465 GLU B 18 REMARK 465 SER B 19 REMARK 465 ARG B 20 REMARK 465 ASN B 21 REMARK 465 SER B 22 REMARK 465 ALA B 23 REMARK 465 GLY C -6 REMARK 465 GLY C -5 REMARK 465 ALA C -4 REMARK 465 ALA C -3 REMARK 465 GLN C -2 REMARK 465 PRO C -1 REMARK 465 ALA C 0 REMARK 465 ARG C 77 REMARK 465 ALA C 78 REMARK 465 GLY C 79 REMARK 465 ALA C 80 REMARK 465 ALA C 81 REMARK 465 ALA C 82 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 2 CG CD OE1 OE2 REMARK 470 GLN C 2 CG CD OE1 NE2 REMARK 470 GLU C 16 CG CD OE1 OE2 REMARK 470 GLU C 18 CG CD OE1 OE2 REMARK 470 LYS C 29 CG CD CE NZ REMARK 470 SER C 57 OG REMARK 470 LYS C 62 CG CD CE NZ REMARK 470 ARG C 74 CG CD NE CZ NH1 NH2 REMARK 470 SER C 75 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG B 9 OD2 ASP C 64 6567 1.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA C 46 48.39 38.08 REMARK 500 REMARK 500 REMARK: NULL DBREF 6NJG B 1 23 UNP P40343 VPS27_YEAST 256 278 DBREF 6NJG C 1 78 UNP J3QS39 J3QS39_HUMAN 1 78 SEQADV 6NJG TYR B 0 UNP P40343 EXPRESSION TAG SEQADV 6NJG GLY C -6 UNP J3QS39 EXPRESSION TAG SEQADV 6NJG GLY C -5 UNP J3QS39 EXPRESSION TAG SEQADV 6NJG ALA C -4 UNP J3QS39 EXPRESSION TAG SEQADV 6NJG ALA C -3 UNP J3QS39 EXPRESSION TAG SEQADV 6NJG GLN C -2 UNP J3QS39 EXPRESSION TAG SEQADV 6NJG PRO C -1 UNP J3QS39 EXPRESSION TAG SEQADV 6NJG ALA C 0 UNP J3QS39 EXPRESSION TAG SEQADV 6NJG GLN C 6 UNP J3QS39 LYS 6 ENGINEERED MUTATION SEQADV 6NJG ILE C 8 UNP J3QS39 LEU 8 ENGINEERED MUTATION SEQADV 6NJG VAL C 10 UNP J3QS39 GLY 10 ENGINEERED MUTATION SEQADV 6NJG MET C 11 UNP J3QS39 LYS 11 ENGINEERED MUTATION SEQADV 6NJG ARG C 12 UNP J3QS39 THR 12 ENGINEERED MUTATION SEQADV 6NJG ALA C 14 UNP J3QS39 THR 14 ENGINEERED MUTATION SEQADV 6NJG MET C 48 UNP J3QS39 LYS 48 ENGINEERED MUTATION SEQADV 6NJG LYS C 62 UNP J3QS39 GLN 62 ENGINEERED MUTATION SEQADV 6NJG ARG C 63 UNP J3QS39 LYS 63 ENGINEERED MUTATION SEQADV 6NJG ASP C 64 UNP J3QS39 GLU 64 ENGINEERED MUTATION SEQADV 6NJG ASN C 66 UNP J3QS39 THR 66 ENGINEERED MUTATION SEQADV 6NJG TYR C 68 UNP J3QS39 HIS 68 ENGINEERED MUTATION SEQADV 6NJG SER C 71 UNP J3QS39 LEU 71 ENGINEERED MUTATION SEQADV 6NJG SER C 72 UNP J3QS39 ARG 72 ENGINEERED MUTATION SEQADV 6NJG SER C 75 UNP J3QS39 GLY 75 ENGINEERED MUTATION SEQADV 6NJG LEU C 76 UNP J3QS39 GLY 76 ENGINEERED MUTATION SEQADV 6NJG ARG C 77 UNP J3QS39 MET 77 ENGINEERED MUTATION SEQADV 6NJG ALA C 78 UNP J3QS39 GLN 78 ENGINEERED MUTATION SEQADV 6NJG GLY C 79 UNP J3QS39 EXPRESSION TAG SEQADV 6NJG ALA C 80 UNP J3QS39 EXPRESSION TAG SEQADV 6NJG ALA C 81 UNP J3QS39 EXPRESSION TAG SEQADV 6NJG ALA C 82 UNP J3QS39 EXPRESSION TAG SEQRES 1 B 24 TYR PRO GLU ASP GLU GLU GLU LEU ILE ARG LYS ALA ILE SEQRES 2 B 24 GLU LEU SER LEU LYS GLU SER ARG ASN SER ALA SEQRES 1 C 89 GLY GLY ALA ALA GLN PRO ALA MET GLN ILE PHE VAL GLN SEQRES 2 C 89 THR ILE THR VAL MET ARG ILE ALA LEU GLU VAL GLU PRO SEQRES 3 C 89 SER ASP THR ILE GLU ASN VAL LYS ALA LYS ILE GLN ASP SEQRES 4 C 89 LYS GLU GLY ILE PRO PRO ASP GLN GLN ARG LEU ILE PHE SEQRES 5 C 89 ALA GLY MET GLN LEU GLU ASP GLY ARG THR LEU SER ASP SEQRES 6 C 89 TYR ASN ILE LYS ARG ASP SER ASN LEU TYR LEU VAL SER SEQRES 7 C 89 SER LEU ARG SER LEU ARG ALA GLY ALA ALA ALA FORMUL 3 HOH *8(H2 O) HELIX 1 AA1 TYR B 0 SER B 15 1 16 HELIX 2 AA2 THR C 22 GLY C 35 1 14 HELIX 3 AA3 PRO C 37 ASP C 39 5 3 HELIX 4 AA4 LEU C 56 ASN C 60 5 5 SHEET 1 AA1 3 MET C 48 GLN C 49 0 SHEET 2 AA1 3 GLN C 41 PHE C 45 -1 N PHE C 45 O MET C 48 SHEET 3 AA1 3 TYR C 68 SER C 71 -1 O TYR C 68 N ILE C 44 CRYST1 44.613 44.613 104.343 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022415 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009584 0.00000