HEADER IMMUNE SYSTEM 10-OCT-18 6MQS TITLE VACCINE-ELICITED NHP FP-TARGETING HIV NEUTRALIZING ANTIBODY A12V163- TITLE 2 A.01 IN COMPLEX WITH HIV FUSION PEPTIDE (RESIDUE 512-519) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY A12V163-A.01 HEAVY CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIBODY A12V163-A.01 LIGHT CHAIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HIV FUSION PEPTIDE RESIDUE 512-519; COMPND 11 CHAIN: E, F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 3 ORGANISM_TAXID: 9544; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 8 ORGANISM_TAXID: 9544; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 14 ORGANISM_TAXID: 11676 KEYWDS HIV, NEUTRALIZING, NHP, FP, FUSION PEPTIDE, VACCINE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.XU,Y.WANG,P.D.KWONG REVDAT 3 13-NOV-19 6MQS 1 SOURCE REVDAT 2 07-AUG-19 6MQS 1 JRNL REVDAT 1 31-JUL-19 6MQS 0 JRNL AUTH R.KONG,H.DUAN,Z.SHENG,K.XU,P.ACHARYA,X.CHEN,C.CHENG, JRNL AUTH 2 A.S.DINGENS,J.GORMAN,M.SASTRY,C.H.SHEN,B.ZHANG,T.ZHOU, JRNL AUTH 3 G.Y.CHUANG,C.W.CHAO,Y.GU,A.J.JAFARI,M.K.LOUDER,S.O'DELL, JRNL AUTH 4 A.P.ROWSHAN,E.G.VIOX,Y.WANG,C.W.CHOI,M.M.CORCORAN, JRNL AUTH 5 A.R.CORRIGAN,V.P.DANDEY,E.T.ENG,H.GENG,K.E.FOULDS,Y.GUO, JRNL AUTH 6 Y.D.KWON,B.LIN,K.LIU,R.D.MASON,M.C.NASON,T.Y.OHR,L.OU, JRNL AUTH 7 R.RAWI,E.K.SARFO,A.SCHON,J.P.TODD,S.WANG,H.WEI,W.WU, JRNL AUTH 8 J.C.MULLIKIN,R.T.BAILER,N.A.DORIA-ROSE, JRNL AUTH 9 G.B.KARLSSON HEDESTAM,D.G.SCORPIO,J.OVERBAUGH,J.D.BLOOM, JRNL AUTH10 B.CARRAGHER,C.S.POTTER,L.SHAPIRO,P.D.KWONG,J.R.MASCOLA JRNL TITL ANTIBODY LINEAGES WITH VACCINE-INDUCED ANTIGEN-BINDING JRNL TITL 2 HOTSPOTS DEVELOP BROAD HIV NEUTRALIZATION. JRNL REF CELL V. 178 567 2019 JRNL REFN ISSN 1097-4172 JRNL PMID 31348886 JRNL DOI 10.1016/J.CELL.2019.06.030 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 26350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 1360 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6884 - 6.4529 0.99 2750 145 0.2214 0.2062 REMARK 3 2 6.4529 - 5.1237 0.99 2591 142 0.2388 0.2277 REMARK 3 3 5.1237 - 4.4766 0.99 2515 148 0.1950 0.2156 REMARK 3 4 4.4766 - 4.0676 0.98 2497 130 0.2113 0.2207 REMARK 3 5 4.0676 - 3.7761 0.99 2485 135 0.2298 0.2696 REMARK 3 6 3.7761 - 3.5536 0.99 2474 145 0.2523 0.3262 REMARK 3 7 3.5536 - 3.3757 0.99 2462 134 0.2639 0.3073 REMARK 3 8 3.3757 - 3.2288 0.99 2467 129 0.2798 0.3066 REMARK 3 9 3.2288 - 3.1045 0.98 2421 131 0.3055 0.3390 REMARK 3 10 3.1045 - 2.9974 0.94 2328 121 0.3309 0.3582 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 87.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 96.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND RESID 2 THROUGH 222) REMARK 3 SELECTION : CHAIN C REMARK 3 ATOM PAIRS NUMBER : 1897 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN B REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 1906 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN E REMARK 3 SELECTION : CHAIN F REMARK 3 ATOM PAIRS NUMBER : 44 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MQS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000237412. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26605 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : 0.84000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M NH4CH3CO2, 0.085 M ACETATE PH REMARK 280 4.6, 25.5% W/V PEG 4000, AND 15% GLYCEROL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 130.50450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.39050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.39050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.25225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.39050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.39050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 195.75675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.39050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.39050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 65.25225 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.39050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.39050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 195.75675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 130.50450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 GLN C 1 REMARK 465 LYS C 223 REMARK 465 THR C 224 REMARK 465 CYS C 225 REMARK 465 PHE E 519 REMARK 465 PHE F 519 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 77 CG GLN A 79 1.72 REMARK 500 NZ LYS A 77 CB GLN A 79 1.79 REMARK 500 CE LYS A 77 OE1 GLN A 79 1.96 REMARK 500 NH2 ARG D 55 O ILE D 59 2.12 REMARK 500 OE2 GLU D 51 NZ LYS D 54 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 142 CG - CD - OE2 ANGL. DEV. = -12.0 DEGREES REMARK 500 LEU A 187 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 CYS A 225 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG C 60 CA - CB - CG ANGL. DEV. = -17.2 DEGREES REMARK 500 ARG C 60 CB - CG - CD ANGL. DEV. = 20.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 15 -5.82 71.12 REMARK 500 SER A 143 -19.16 88.42 REMARK 500 ASP A 153 66.80 60.19 REMARK 500 ASN B 28 -74.83 -114.00 REMARK 500 ASN B 52 -28.05 69.88 REMARK 500 TYR B 53 -3.73 -146.45 REMARK 500 ASP B 155 -54.98 -26.34 REMARK 500 ASN B 174 -0.89 64.02 REMARK 500 SER C 15 -4.76 77.72 REMARK 500 ASN D 28 -72.83 -113.05 REMARK 500 ASN D 52 -26.79 70.90 REMARK 500 TYR D 53 -5.50 -146.36 REMARK 500 SER D 103 174.71 -57.45 REMARK 500 ASN D 174 -0.01 64.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA B 154 ASP B 155 -143.89 REMARK 500 REMARK 500 REMARK: NULL DBREF 6MQS A 1 225 PDB 6MQS 6MQS 1 225 DBREF 6MQS B 1 215 PDB 6MQS 6MQS 1 215 DBREF 6MQS C 1 225 PDB 6MQS 6MQS 1 225 DBREF 6MQS D 1 215 PDB 6MQS 6MQS 1 215 DBREF 6MQS E 512 519 PDB 6MQS 6MQS 512 519 DBREF 6MQS F 512 519 PDB 6MQS 6MQS 512 519 SEQRES 1 A 225 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 A 225 PRO SER GLU THR LEU SER LEU THR CYS GLY VAL SER GLY SEQRES 3 A 225 GLY SER ILE SER ASP ALA TYR TYR TRP SER TRP ILE ARG SEQRES 4 A 225 GLN SER PRO GLY LYS ARG LEU GLU TRP ILE GLY TYR ILE SEQRES 5 A 225 PHE GLY SER ASN GLY GLY THR ARG TYR ASN PRO SER LEU SEQRES 6 A 225 ARG SER ARG VAL SER ILE SER ILE ASP THR SER LYS ASN SEQRES 7 A 225 GLN LEU SER LEU LYS LEU THR SER VAL THR ALA ALA ASP SEQRES 8 A 225 THR ALA VAL TYR TYR CYS VAL ARG GLU GLY VAL PRO THR SEQRES 9 A 225 GLU ALA THR THR GLY ASP HIS TRP GLY GLN GLY VAL PRO SEQRES 10 A 225 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 A 225 PHE PRO LEU ALA PRO SER SER ARG SER THR SER GLU SER SEQRES 12 A 225 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 A 225 GLU PRO VAL THR VAL SER TRP ASN SER GLY SER LEU THR SEQRES 14 A 225 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 A 225 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 A 225 SER SER LEU GLY THR GLN THR TYR VAL CYS ASN VAL ASN SEQRES 17 A 225 HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU SEQRES 18 A 225 ILE LYS THR CYS SEQRES 1 B 215 GLN PHE VAL LEU THR GLN PRO PRO SER MET SER GLY ALA SEQRES 2 B 215 PRO GLY GLN ARG VAL THR ILE SER CYS THR GLY THR ASN SEQRES 3 B 215 SER ASN ILE GLY VAL ASN TYR VAL GLN TRP TYR GLN GLN SEQRES 4 B 215 PHE PRO GLY THR ALA PRO LYS LEU LEU ILE TYR GLU ASN SEQRES 5 B 215 TYR LYS ARG PRO SER GLY ILE SER ASP ARG PHE SER GLY SEQRES 6 B 215 SER GLN SER GLY SER SER ALA SER LEU THR ILE THR GLY SEQRES 7 B 215 LEU GLN SER GLU ASP GLU ALA ASP TYR TYR CYS GLN SER SEQRES 8 B 215 TYR ASP ILE SER LEU GLY ALA HIS VAL PHE GLY SER GLY SEQRES 9 B 215 THR GLU LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SEQRES 10 B 215 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 B 215 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 B 215 TYR PRO GLY ALA VAL GLU VAL ALA TRP LYS ALA ASP GLY SEQRES 13 B 215 SER ALA VAL ASN ALA GLY VAL GLU THR THR LYS PRO SER SEQRES 14 B 215 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 B 215 SER LEU THR SER ASP GLN TRP LYS SER HIS LYS SER TYR SEQRES 16 B 215 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 B 215 THR VAL ALA PRO ALA GLU CYS SEQRES 1 C 225 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 C 225 PRO SER GLU THR LEU SER LEU THR CYS GLY VAL SER GLY SEQRES 3 C 225 GLY SER ILE SER ASP ALA TYR TYR TRP SER TRP ILE ARG SEQRES 4 C 225 GLN SER PRO GLY LYS ARG LEU GLU TRP ILE GLY TYR ILE SEQRES 5 C 225 PHE GLY SER ASN GLY GLY THR ARG TYR ASN PRO SER LEU SEQRES 6 C 225 ARG SER ARG VAL SER ILE SER ILE ASP THR SER LYS ASN SEQRES 7 C 225 GLN LEU SER LEU LYS LEU THR SER VAL THR ALA ALA ASP SEQRES 8 C 225 THR ALA VAL TYR TYR CYS VAL ARG GLU GLY VAL PRO THR SEQRES 9 C 225 GLU ALA THR THR GLY ASP HIS TRP GLY GLN GLY VAL PRO SEQRES 10 C 225 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 C 225 PHE PRO LEU ALA PRO SER SER ARG SER THR SER GLU SER SEQRES 12 C 225 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 C 225 GLU PRO VAL THR VAL SER TRP ASN SER GLY SER LEU THR SEQRES 14 C 225 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 C 225 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 C 225 SER SER LEU GLY THR GLN THR TYR VAL CYS ASN VAL ASN SEQRES 17 C 225 HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU SEQRES 18 C 225 ILE LYS THR CYS SEQRES 1 D 215 GLN PHE VAL LEU THR GLN PRO PRO SER MET SER GLY ALA SEQRES 2 D 215 PRO GLY GLN ARG VAL THR ILE SER CYS THR GLY THR ASN SEQRES 3 D 215 SER ASN ILE GLY VAL ASN TYR VAL GLN TRP TYR GLN GLN SEQRES 4 D 215 PHE PRO GLY THR ALA PRO LYS LEU LEU ILE TYR GLU ASN SEQRES 5 D 215 TYR LYS ARG PRO SER GLY ILE SER ASP ARG PHE SER GLY SEQRES 6 D 215 SER GLN SER GLY SER SER ALA SER LEU THR ILE THR GLY SEQRES 7 D 215 LEU GLN SER GLU ASP GLU ALA ASP TYR TYR CYS GLN SER SEQRES 8 D 215 TYR ASP ILE SER LEU GLY ALA HIS VAL PHE GLY SER GLY SEQRES 9 D 215 THR GLU LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SEQRES 10 D 215 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 D 215 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 D 215 TYR PRO GLY ALA VAL GLU VAL ALA TRP LYS ALA ASP GLY SEQRES 13 D 215 SER ALA VAL ASN ALA GLY VAL GLU THR THR LYS PRO SER SEQRES 14 D 215 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 D 215 SER LEU THR SER ASP GLN TRP LYS SER HIS LYS SER TYR SEQRES 16 D 215 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 D 215 THR VAL ALA PRO ALA GLU CYS SEQRES 1 E 8 ALA VAL GLY ILE GLY ALA VAL PHE SEQRES 1 F 8 ALA VAL GLY ILE GLY ALA VAL PHE HELIX 1 AA1 THR A 88 THR A 92 5 5 HELIX 2 AA2 THR A 140 GLU A 142 5 3 HELIX 3 AA3 SER A 165 SER A 167 5 3 HELIX 4 AA4 SER A 196 GLN A 201 1 6 HELIX 5 AA5 LYS A 210 ASN A 213 5 4 HELIX 6 AA6 GLN B 80 GLU B 84 5 5 HELIX 7 AA7 SER B 125 ALA B 131 1 7 HELIX 8 AA8 SER B 186 SER B 191 1 6 HELIX 9 AA9 PRO C 63 ARG C 66 5 4 HELIX 10 AB1 THR C 88 THR C 92 5 5 HELIX 11 AB2 SER C 136 SER C 141 1 6 HELIX 12 AB3 SER C 196 THR C 200 5 5 HELIX 13 AB4 LYS C 210 ASN C 213 5 4 HELIX 14 AB5 GLN D 80 GLU D 84 5 5 HELIX 15 AB6 SER D 125 ALA D 131 1 7 HELIX 16 AB7 SER D 186 LYS D 190 1 5 SHEET 1 AA1 4 GLN A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O SER A 25 N GLN A 3 SHEET 3 AA1 4 GLN A 79 LEU A 84 -1 O LEU A 84 N LEU A 18 SHEET 4 AA1 4 VAL A 69 ASP A 74 -1 N ASP A 74 O GLN A 79 SHEET 1 AA2 6 LEU A 11 VAL A 12 0 SHEET 2 AA2 6 VAL A 116 VAL A 120 1 O THR A 119 N VAL A 12 SHEET 3 AA2 6 ALA A 93 ARG A 99 -1 N ALA A 93 O VAL A 118 SHEET 4 AA2 6 TYR A 34 GLN A 40 -1 N ILE A 38 O TYR A 96 SHEET 5 AA2 6 LEU A 46 PHE A 53 -1 O GLU A 47 N ARG A 39 SHEET 6 AA2 6 THR A 59 TYR A 61 -1 O ARG A 60 N TYR A 51 SHEET 1 AA3 4 LEU A 11 VAL A 12 0 SHEET 2 AA3 4 VAL A 116 VAL A 120 1 O THR A 119 N VAL A 12 SHEET 3 AA3 4 ALA A 93 ARG A 99 -1 N ALA A 93 O VAL A 118 SHEET 4 AA3 4 HIS A 111 TRP A 112 -1 O HIS A 111 N ARG A 99 SHEET 1 AA4 4 SER A 129 LEU A 133 0 SHEET 2 AA4 4 THR A 144 TYR A 154 -1 O LEU A 150 N PHE A 131 SHEET 3 AA4 4 TYR A 185 PRO A 194 -1 O TYR A 185 N TYR A 154 SHEET 4 AA4 4 VAL A 172 THR A 174 -1 N HIS A 173 O VAL A 190 SHEET 1 AA5 4 SER A 129 LEU A 133 0 SHEET 2 AA5 4 THR A 144 TYR A 154 -1 O LEU A 150 N PHE A 131 SHEET 3 AA5 4 TYR A 185 PRO A 194 -1 O TYR A 185 N TYR A 154 SHEET 4 AA5 4 VAL A 178 LEU A 179 -1 N VAL A 178 O SER A 186 SHEET 1 AA6 3 THR A 160 TRP A 163 0 SHEET 2 AA6 3 TYR A 203 HIS A 209 -1 O ASN A 206 N SER A 162 SHEET 3 AA6 3 THR A 214 VAL A 220 -1 O VAL A 220 N TYR A 203 SHEET 1 AA7 5 SER B 9 GLY B 12 0 SHEET 2 AA7 5 THR B 105 VAL B 109 1 O GLU B 106 N MET B 10 SHEET 3 AA7 5 ALA B 85 ASP B 93 -1 N ALA B 85 O LEU B 107 SHEET 4 AA7 5 VAL B 34 GLN B 39 -1 N TYR B 37 O TYR B 88 SHEET 5 AA7 5 LYS B 46 ILE B 49 -1 O LYS B 46 N GLN B 38 SHEET 1 AA8 4 SER B 9 GLY B 12 0 SHEET 2 AA8 4 THR B 105 VAL B 109 1 O GLU B 106 N MET B 10 SHEET 3 AA8 4 ALA B 85 ASP B 93 -1 N ALA B 85 O LEU B 107 SHEET 4 AA8 4 ALA B 98 PHE B 101 -1 O VAL B 100 N SER B 91 SHEET 1 AA9 3 VAL B 18 THR B 23 0 SHEET 2 AA9 3 SER B 71 ILE B 76 -1 O ILE B 76 N VAL B 18 SHEET 3 AA9 3 PHE B 63 SER B 68 -1 N SER B 64 O THR B 75 SHEET 1 AB1 4 SER B 118 PHE B 122 0 SHEET 2 AB1 4 LYS B 133 PHE B 143 -1 O LEU B 139 N THR B 120 SHEET 3 AB1 4 TYR B 176 THR B 185 -1 O TYR B 176 N PHE B 143 SHEET 4 AB1 4 VAL B 163 THR B 165 -1 N GLU B 164 O TYR B 181 SHEET 1 AB2 4 SER B 118 PHE B 122 0 SHEET 2 AB2 4 LYS B 133 PHE B 143 -1 O LEU B 139 N THR B 120 SHEET 3 AB2 4 TYR B 176 THR B 185 -1 O TYR B 176 N PHE B 143 SHEET 4 AB2 4 SER B 169 LYS B 170 -1 N SER B 169 O ALA B 177 SHEET 1 AB3 4 ALA B 158 VAL B 159 0 SHEET 2 AB3 4 GLU B 149 ALA B 154 -1 N TRP B 152 O VAL B 159 SHEET 3 AB3 4 TYR B 195 HIS B 201 -1 O THR B 200 N GLU B 149 SHEET 4 AB3 4 SER B 204 VAL B 210 -1 O SER B 204 N HIS B 201 SHEET 1 AB4 4 GLN C 3 SER C 7 0 SHEET 2 AB4 4 LEU C 18 SER C 25 -1 O GLY C 23 N GLN C 5 SHEET 3 AB4 4 GLN C 79 LEU C 84 -1 O LEU C 82 N LEU C 20 SHEET 4 AB4 4 VAL C 69 ASP C 74 -1 N SER C 70 O LYS C 83 SHEET 1 AB5 6 LEU C 11 VAL C 12 0 SHEET 2 AB5 6 VAL C 116 VAL C 120 1 O THR C 119 N VAL C 12 SHEET 3 AB5 6 ALA C 93 ARG C 99 -1 N ALA C 93 O VAL C 118 SHEET 4 AB5 6 TYR C 34 GLN C 40 -1 N ILE C 38 O TYR C 96 SHEET 5 AB5 6 LEU C 46 PHE C 53 -1 O ILE C 49 N TRP C 37 SHEET 6 AB5 6 THR C 59 TYR C 61 -1 O ARG C 60 N TYR C 51 SHEET 1 AB6 4 LEU C 11 VAL C 12 0 SHEET 2 AB6 4 VAL C 116 VAL C 120 1 O THR C 119 N VAL C 12 SHEET 3 AB6 4 ALA C 93 ARG C 99 -1 N ALA C 93 O VAL C 118 SHEET 4 AB6 4 HIS C 111 TRP C 112 -1 O HIS C 111 N ARG C 99 SHEET 1 AB7 4 SER C 129 LEU C 133 0 SHEET 2 AB7 4 THR C 144 TYR C 154 -1 O LYS C 152 N SER C 129 SHEET 3 AB7 4 TYR C 185 PRO C 194 -1 O VAL C 193 N ALA C 145 SHEET 4 AB7 4 VAL C 172 THR C 174 -1 N HIS C 173 O VAL C 190 SHEET 1 AB8 4 SER C 129 LEU C 133 0 SHEET 2 AB8 4 THR C 144 TYR C 154 -1 O LYS C 152 N SER C 129 SHEET 3 AB8 4 TYR C 185 PRO C 194 -1 O VAL C 193 N ALA C 145 SHEET 4 AB8 4 VAL C 178 LEU C 179 -1 N VAL C 178 O SER C 186 SHEET 1 AB9 3 THR C 160 TRP C 163 0 SHEET 2 AB9 3 TYR C 203 HIS C 209 -1 O ASN C 206 N SER C 162 SHEET 3 AB9 3 THR C 214 VAL C 220 -1 O THR C 214 N HIS C 209 SHEET 1 AC1 5 SER D 9 GLY D 12 0 SHEET 2 AC1 5 THR D 105 VAL D 109 1 O GLU D 106 N MET D 10 SHEET 3 AC1 5 ALA D 85 ASP D 93 -1 N ALA D 85 O LEU D 107 SHEET 4 AC1 5 VAL D 34 GLN D 39 -1 N TYR D 37 O TYR D 88 SHEET 5 AC1 5 LYS D 46 ILE D 49 -1 O LEU D 48 N TRP D 36 SHEET 1 AC2 4 SER D 9 GLY D 12 0 SHEET 2 AC2 4 THR D 105 VAL D 109 1 O GLU D 106 N MET D 10 SHEET 3 AC2 4 ALA D 85 ASP D 93 -1 N ALA D 85 O LEU D 107 SHEET 4 AC2 4 ALA D 98 PHE D 101 -1 O VAL D 100 N SER D 91 SHEET 1 AC3 3 VAL D 18 THR D 23 0 SHEET 2 AC3 3 SER D 71 ILE D 76 -1 O ILE D 76 N VAL D 18 SHEET 3 AC3 3 PHE D 63 SER D 68 -1 N SER D 64 O THR D 75 SHEET 1 AC4 4 SER D 118 PHE D 122 0 SHEET 2 AC4 4 LYS D 133 PHE D 143 -1 O VAL D 137 N PHE D 122 SHEET 3 AC4 4 TYR D 176 THR D 185 -1 O TYR D 176 N PHE D 143 SHEET 4 AC4 4 VAL D 163 THR D 165 -1 N GLU D 164 O TYR D 181 SHEET 1 AC5 4 SER D 118 PHE D 122 0 SHEET 2 AC5 4 LYS D 133 PHE D 143 -1 O VAL D 137 N PHE D 122 SHEET 3 AC5 4 TYR D 176 THR D 185 -1 O TYR D 176 N PHE D 143 SHEET 4 AC5 4 SER D 169 LYS D 170 -1 N SER D 169 O ALA D 177 SHEET 1 AC6 4 SER D 157 VAL D 159 0 SHEET 2 AC6 4 GLU D 149 ALA D 154 -1 N ALA D 154 O SER D 157 SHEET 3 AC6 4 TYR D 195 HIS D 201 -1 O THR D 200 N GLU D 149 SHEET 4 AC6 4 SER D 204 VAL D 210 -1 O VAL D 210 N TYR D 195 SSBOND 1 CYS A 22 CYS A 97 1555 1555 2.06 SSBOND 2 CYS A 149 CYS A 205 1555 1555 2.06 SSBOND 3 CYS A 225 CYS B 215 1555 1555 1.99 SSBOND 4 CYS B 22 CYS B 89 1555 1555 2.08 SSBOND 5 CYS B 138 CYS B 197 1555 1555 2.06 SSBOND 6 CYS C 22 CYS C 97 1555 1555 2.05 SSBOND 7 CYS C 149 CYS C 205 1555 1555 2.02 SSBOND 8 CYS D 22 CYS D 89 1555 1555 2.07 SSBOND 9 CYS D 138 CYS D 197 1555 1555 2.07 CISPEP 1 PHE A 155 PRO A 156 0 -12.17 CISPEP 2 GLU A 157 PRO A 158 0 -2.34 CISPEP 3 TYR B 144 PRO B 145 0 -6.52 CISPEP 4 PHE C 155 PRO C 156 0 -15.70 CISPEP 5 GLU C 157 PRO C 158 0 0.11 CISPEP 6 TYR D 144 PRO D 145 0 -7.06 CRYST1 98.781 98.781 261.009 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010123 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010123 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003831 0.00000