HEADER HYDROLASE 07-SEP-18 6HKS TITLE CRYSTAL STRUCTURE OF THE PTPN3 PDZ DOMAIN BOUND TO THE HPV16 E6 TITLE 2 ONCOPROTEIN C-TERMINAL PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 3; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE H1,PTP-H1; COMPND 5 EC: 3.1.3.48; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROTEIN E6; COMPND 9 CHAIN: G, H, I, J, K, L; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN3, PTPH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HUMAN PAPILLOMAVIRUS TYPE 16; SOURCE 11 ORGANISM_TAXID: 333760; SOURCE 12 GENE: E6; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: B KEYWDS PDZ DOMAIN PROTEIN TYROSINE PHOSPHATASE HUMAN PAPILLOMAVIRUS E6 KEYWDS 2 ONCOPROTEIN PDZ BINDING MOTIF, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GENERA,A.HAOUZ,C.CAILLET-SAGUY REVDAT 3 17-JAN-24 6HKS 1 REMARK REVDAT 2 29-MAY-19 6HKS 1 JRNL REVDAT 1 22-MAY-19 6HKS 0 JRNL AUTH M.GENERA,D.SAMSON,B.RAYNAL,A.HAOUZ,B.BARON,C.SIMENEL, JRNL AUTH 2 R.GUEROIS,N.WOLFF,C.CAILLET-SAGUY JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF THE PDZ DOMAIN JRNL TITL 2 OF THE HUMAN PHOSPHATASE PTPN3 AND ITS INTERACTION WITH THE JRNL TITL 3 HUMAN PAPILLOMAVIRUS E6 ONCOPROTEIN. JRNL REF SCI REP V. 9 7438 2019 JRNL REFN ESSN 2045-2322 JRNL PMID 31092861 JRNL DOI 10.1038/S41598-019-43932-X REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.365 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 46869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.003 REMARK 3 FREE R VALUE TEST SET COUNT : 2345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.3516 - 5.6385 0.99 2702 142 0.1667 0.2021 REMARK 3 2 5.6385 - 4.4770 1.00 2673 141 0.1368 0.1691 REMARK 3 3 4.4770 - 3.9115 1.00 2647 139 0.1430 0.1983 REMARK 3 4 3.9115 - 3.5540 1.00 2670 140 0.1593 0.2151 REMARK 3 5 3.5540 - 3.2994 1.00 2648 140 0.1876 0.2556 REMARK 3 6 3.2994 - 3.1049 1.00 2610 138 0.2025 0.2966 REMARK 3 7 3.1049 - 2.9495 1.00 2680 141 0.2185 0.3048 REMARK 3 8 2.9495 - 2.8211 0.99 2613 138 0.2192 0.2574 REMARK 3 9 2.8211 - 2.7125 0.99 2643 139 0.2258 0.2881 REMARK 3 10 2.7125 - 2.6189 1.00 2612 138 0.2295 0.2733 REMARK 3 11 2.6189 - 2.5370 0.99 2644 140 0.2354 0.2784 REMARK 3 12 2.5370 - 2.4645 1.00 2606 137 0.2814 0.3680 REMARK 3 13 2.4645 - 2.3996 0.99 2638 138 0.3063 0.3219 REMARK 3 14 2.3996 - 2.3411 1.00 2585 137 0.3117 0.3931 REMARK 3 15 2.3411 - 2.2879 0.98 2626 138 0.3504 0.3860 REMARK 3 16 2.2879 - 2.2392 1.00 2622 138 0.3753 0.3682 REMARK 3 17 2.2392 - 2.1944 0.88 2305 121 0.4131 0.4362 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.386 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.224 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4813 REMARK 3 ANGLE : 0.938 6483 REMARK 3 CHIRALITY : 0.057 740 REMARK 3 PLANARITY : 0.005 863 REMARK 3 DIHEDRAL : 7.169 3207 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -0.4396 41.3236 32.3647 REMARK 3 T TENSOR REMARK 3 T11: 0.3473 T22: 0.3191 REMARK 3 T33: 0.4414 T12: 0.0050 REMARK 3 T13: 0.0078 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.5729 L22: 0.0564 REMARK 3 L33: 0.3768 L12: 0.0464 REMARK 3 L13: 0.1740 L23: 0.0452 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: -0.0131 S13: 0.0145 REMARK 3 S21: -0.0017 S22: 0.0201 S23: -0.0144 REMARK 3 S31: -0.0105 S32: 0.0185 S33: -0.0280 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HKS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200011797. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978549599648 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47024 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 46.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5EZ0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG 3350 0.2 MM KI PH 7, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.71500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 484 REMARK 465 ALA A 485 REMARK 465 MET A 486 REMARK 465 GLY A 487 REMARK 465 SER A 488 REMARK 465 SER A 489 REMARK 465 THR A 490 REMARK 465 GLU A 491 REMARK 465 ASP A 492 REMARK 465 ALA A 493 REMARK 465 SER A 494 REMARK 465 GLN A 495 REMARK 465 TYR A 496 REMARK 465 TYR A 497 REMARK 465 CYS A 498 REMARK 465 ASP A 499 REMARK 465 LYS A 500 REMARK 465 ASN A 501 REMARK 465 ASP A 502 REMARK 465 ASN A 503 REMARK 465 GLY A 504 REMARK 465 GLY B 484 REMARK 465 ALA B 485 REMARK 465 MET B 486 REMARK 465 GLY B 487 REMARK 465 SER B 488 REMARK 465 SER B 489 REMARK 465 THR B 490 REMARK 465 GLU B 491 REMARK 465 ASP B 492 REMARK 465 ALA B 493 REMARK 465 SER B 494 REMARK 465 GLN B 495 REMARK 465 TYR B 496 REMARK 465 TYR B 497 REMARK 465 CYS B 498 REMARK 465 ASP B 499 REMARK 465 LYS B 500 REMARK 465 ASN B 501 REMARK 465 ASP B 502 REMARK 465 ASN B 503 REMARK 465 GLY C 484 REMARK 465 ALA C 485 REMARK 465 MET C 486 REMARK 465 GLY C 487 REMARK 465 SER C 488 REMARK 465 SER C 489 REMARK 465 THR C 490 REMARK 465 GLU C 491 REMARK 465 ASP C 492 REMARK 465 ALA C 493 REMARK 465 SER C 494 REMARK 465 GLN C 495 REMARK 465 TYR C 496 REMARK 465 TYR C 497 REMARK 465 CYS C 498 REMARK 465 ASP C 499 REMARK 465 LYS C 500 REMARK 465 ASN C 501 REMARK 465 ASP C 502 REMARK 465 ASN C 503 REMARK 465 GLY C 504 REMARK 465 ASP C 505 REMARK 465 ARG C 597 REMARK 465 GLY D 484 REMARK 465 ALA D 485 REMARK 465 MET D 486 REMARK 465 GLY D 487 REMARK 465 SER D 488 REMARK 465 SER D 489 REMARK 465 THR D 490 REMARK 465 GLU D 491 REMARK 465 ASP D 492 REMARK 465 ALA D 493 REMARK 465 SER D 494 REMARK 465 GLN D 495 REMARK 465 TYR D 496 REMARK 465 TYR D 497 REMARK 465 CYS D 498 REMARK 465 ASP D 499 REMARK 465 LYS D 500 REMARK 465 ASN D 501 REMARK 465 ASP D 502 REMARK 465 ASN D 503 REMARK 465 GLY D 504 REMARK 465 ARG D 597 REMARK 465 GLY E 484 REMARK 465 ALA E 485 REMARK 465 MET E 486 REMARK 465 GLY E 487 REMARK 465 SER E 488 REMARK 465 SER E 489 REMARK 465 THR E 490 REMARK 465 GLU E 491 REMARK 465 ASP E 492 REMARK 465 ALA E 493 REMARK 465 SER E 494 REMARK 465 GLN E 495 REMARK 465 TYR E 496 REMARK 465 TYR E 497 REMARK 465 CYS E 498 REMARK 465 ASP E 499 REMARK 465 LYS E 500 REMARK 465 ASN E 501 REMARK 465 ASP E 502 REMARK 465 ASN E 503 REMARK 465 GLY E 504 REMARK 465 GLY F 484 REMARK 465 ALA F 485 REMARK 465 MET F 486 REMARK 465 GLY F 487 REMARK 465 SER F 488 REMARK 465 SER F 489 REMARK 465 THR F 490 REMARK 465 GLU F 491 REMARK 465 ASP F 492 REMARK 465 ALA F 493 REMARK 465 SER F 494 REMARK 465 GLN F 495 REMARK 465 TYR F 496 REMARK 465 TYR F 497 REMARK 465 CYS F 498 REMARK 465 ASP F 499 REMARK 465 LYS F 500 REMARK 465 ASN F 501 REMARK 465 ASP F 502 REMARK 465 ASN F 503 REMARK 465 GLY F 504 REMARK 465 ARG G -3 REMARK 465 SER G -2 REMARK 465 SER G -1 REMARK 465 ARG G 0 REMARK 465 ARG H -3 REMARK 465 SER H -2 REMARK 465 SER H -1 REMARK 465 ARG H 0 REMARK 465 THR H 1 REMARK 465 ARG I -3 REMARK 465 SER I -2 REMARK 465 SER I -1 REMARK 465 ARG I 0 REMARK 465 THR I 1 REMARK 465 ARG J -3 REMARK 465 SER J -2 REMARK 465 SER J -1 REMARK 465 ARG J 0 REMARK 465 THR J 1 REMARK 465 ARG K -3 REMARK 465 SER K -2 REMARK 465 SER K -1 REMARK 465 ARG K 0 REMARK 465 THR K 1 REMARK 465 ARG L -3 REMARK 465 SER L -2 REMARK 465 SER L -1 REMARK 465 ARG L 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 532 40.85 -98.43 REMARK 500 SER A 585 -160.26 -121.93 REMARK 500 ARG A 588 -0.46 64.80 REMARK 500 GLU B 543 -4.22 76.36 REMARK 500 SER B 585 178.16 -59.63 REMARK 500 SER D 585 -178.15 -65.17 REMARK 500 GLU E 543 -0.31 71.05 REMARK 500 ARG K 3 118.24 175.94 REMARK 500 ARG L 2 115.44 61.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH E 730 DISTANCE = 6.09 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD E 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD F 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD F 602 DBREF 6HKS A 489 597 UNP P26045 PTN3_HUMAN 489 597 DBREF 6HKS B 489 597 UNP P26045 PTN3_HUMAN 489 597 DBREF 6HKS C 489 597 UNP P26045 PTN3_HUMAN 489 597 DBREF 6HKS D 489 597 UNP P26045 PTN3_HUMAN 489 597 DBREF 6HKS E 489 597 UNP P26045 PTN3_HUMAN 489 597 DBREF 6HKS F 489 597 UNP P26045 PTN3_HUMAN 489 597 DBREF 6HKS G -3 7 UNP P03126 VE6_HPV16 148 158 DBREF 6HKS H -3 7 UNP P03126 VE6_HPV16 148 158 DBREF 6HKS I -3 7 UNP P03126 VE6_HPV16 148 158 DBREF 6HKS J -3 7 UNP P03126 VE6_HPV16 148 158 DBREF 6HKS K -3 7 UNP P03126 VE6_HPV16 148 158 DBREF 6HKS L -3 7 UNP P03126 VE6_HPV16 148 158 SEQADV 6HKS GLY A 484 UNP P26045 EXPRESSION TAG SEQADV 6HKS ALA A 485 UNP P26045 EXPRESSION TAG SEQADV 6HKS MET A 486 UNP P26045 EXPRESSION TAG SEQADV 6HKS GLY A 487 UNP P26045 EXPRESSION TAG SEQADV 6HKS SER A 488 UNP P26045 EXPRESSION TAG SEQADV 6HKS GLY B 484 UNP P26045 EXPRESSION TAG SEQADV 6HKS ALA B 485 UNP P26045 EXPRESSION TAG SEQADV 6HKS MET B 486 UNP P26045 EXPRESSION TAG SEQADV 6HKS GLY B 487 UNP P26045 EXPRESSION TAG SEQADV 6HKS SER B 488 UNP P26045 EXPRESSION TAG SEQADV 6HKS GLY C 484 UNP P26045 EXPRESSION TAG SEQADV 6HKS ALA C 485 UNP P26045 EXPRESSION TAG SEQADV 6HKS MET C 486 UNP P26045 EXPRESSION TAG SEQADV 6HKS GLY C 487 UNP P26045 EXPRESSION TAG SEQADV 6HKS SER C 488 UNP P26045 EXPRESSION TAG SEQADV 6HKS GLY D 484 UNP P26045 EXPRESSION TAG SEQADV 6HKS ALA D 485 UNP P26045 EXPRESSION TAG SEQADV 6HKS MET D 486 UNP P26045 EXPRESSION TAG SEQADV 6HKS GLY D 487 UNP P26045 EXPRESSION TAG SEQADV 6HKS SER D 488 UNP P26045 EXPRESSION TAG SEQADV 6HKS GLY E 484 UNP P26045 EXPRESSION TAG SEQADV 6HKS ALA E 485 UNP P26045 EXPRESSION TAG SEQADV 6HKS MET E 486 UNP P26045 EXPRESSION TAG SEQADV 6HKS GLY E 487 UNP P26045 EXPRESSION TAG SEQADV 6HKS SER E 488 UNP P26045 EXPRESSION TAG SEQADV 6HKS GLY F 484 UNP P26045 EXPRESSION TAG SEQADV 6HKS ALA F 485 UNP P26045 EXPRESSION TAG SEQADV 6HKS MET F 486 UNP P26045 EXPRESSION TAG SEQADV 6HKS GLY F 487 UNP P26045 EXPRESSION TAG SEQADV 6HKS SER F 488 UNP P26045 EXPRESSION TAG SEQRES 1 A 114 GLY ALA MET GLY SER SER THR GLU ASP ALA SER GLN TYR SEQRES 2 A 114 TYR CYS ASP LYS ASN ASP ASN GLY ASP SER TYR LEU VAL SEQRES 3 A 114 LEU ILE ARG ILE THR PRO ASP GLU ASP GLY LYS PHE GLY SEQRES 4 A 114 PHE ASN LEU LYS GLY GLY VAL ASP GLN LYS MET PRO LEU SEQRES 5 A 114 VAL VAL SER ARG ILE ASN PRO GLU SER PRO ALA ASP THR SEQRES 6 A 114 CYS ILE PRO LYS LEU ASN GLU GLY ASP GLN ILE VAL LEU SEQRES 7 A 114 ILE ASN GLY ARG ASP ILE SER GLU HIS THR HIS ASP GLN SEQRES 8 A 114 VAL VAL MET PHE ILE LYS ALA SER ARG GLU SER HIS SER SEQRES 9 A 114 ARG GLU LEU ALA LEU VAL ILE ARG ARG ARG SEQRES 1 B 114 GLY ALA MET GLY SER SER THR GLU ASP ALA SER GLN TYR SEQRES 2 B 114 TYR CYS ASP LYS ASN ASP ASN GLY ASP SER TYR LEU VAL SEQRES 3 B 114 LEU ILE ARG ILE THR PRO ASP GLU ASP GLY LYS PHE GLY SEQRES 4 B 114 PHE ASN LEU LYS GLY GLY VAL ASP GLN LYS MET PRO LEU SEQRES 5 B 114 VAL VAL SER ARG ILE ASN PRO GLU SER PRO ALA ASP THR SEQRES 6 B 114 CYS ILE PRO LYS LEU ASN GLU GLY ASP GLN ILE VAL LEU SEQRES 7 B 114 ILE ASN GLY ARG ASP ILE SER GLU HIS THR HIS ASP GLN SEQRES 8 B 114 VAL VAL MET PHE ILE LYS ALA SER ARG GLU SER HIS SER SEQRES 9 B 114 ARG GLU LEU ALA LEU VAL ILE ARG ARG ARG SEQRES 1 C 114 GLY ALA MET GLY SER SER THR GLU ASP ALA SER GLN TYR SEQRES 2 C 114 TYR CYS ASP LYS ASN ASP ASN GLY ASP SER TYR LEU VAL SEQRES 3 C 114 LEU ILE ARG ILE THR PRO ASP GLU ASP GLY LYS PHE GLY SEQRES 4 C 114 PHE ASN LEU LYS GLY GLY VAL ASP GLN LYS MET PRO LEU SEQRES 5 C 114 VAL VAL SER ARG ILE ASN PRO GLU SER PRO ALA ASP THR SEQRES 6 C 114 CYS ILE PRO LYS LEU ASN GLU GLY ASP GLN ILE VAL LEU SEQRES 7 C 114 ILE ASN GLY ARG ASP ILE SER GLU HIS THR HIS ASP GLN SEQRES 8 C 114 VAL VAL MET PHE ILE LYS ALA SER ARG GLU SER HIS SER SEQRES 9 C 114 ARG GLU LEU ALA LEU VAL ILE ARG ARG ARG SEQRES 1 D 114 GLY ALA MET GLY SER SER THR GLU ASP ALA SER GLN TYR SEQRES 2 D 114 TYR CYS ASP LYS ASN ASP ASN GLY ASP SER TYR LEU VAL SEQRES 3 D 114 LEU ILE ARG ILE THR PRO ASP GLU ASP GLY LYS PHE GLY SEQRES 4 D 114 PHE ASN LEU LYS GLY GLY VAL ASP GLN LYS MET PRO LEU SEQRES 5 D 114 VAL VAL SER ARG ILE ASN PRO GLU SER PRO ALA ASP THR SEQRES 6 D 114 CYS ILE PRO LYS LEU ASN GLU GLY ASP GLN ILE VAL LEU SEQRES 7 D 114 ILE ASN GLY ARG ASP ILE SER GLU HIS THR HIS ASP GLN SEQRES 8 D 114 VAL VAL MET PHE ILE LYS ALA SER ARG GLU SER HIS SER SEQRES 9 D 114 ARG GLU LEU ALA LEU VAL ILE ARG ARG ARG SEQRES 1 E 114 GLY ALA MET GLY SER SER THR GLU ASP ALA SER GLN TYR SEQRES 2 E 114 TYR CYS ASP LYS ASN ASP ASN GLY ASP SER TYR LEU VAL SEQRES 3 E 114 LEU ILE ARG ILE THR PRO ASP GLU ASP GLY LYS PHE GLY SEQRES 4 E 114 PHE ASN LEU LYS GLY GLY VAL ASP GLN LYS MET PRO LEU SEQRES 5 E 114 VAL VAL SER ARG ILE ASN PRO GLU SER PRO ALA ASP THR SEQRES 6 E 114 CYS ILE PRO LYS LEU ASN GLU GLY ASP GLN ILE VAL LEU SEQRES 7 E 114 ILE ASN GLY ARG ASP ILE SER GLU HIS THR HIS ASP GLN SEQRES 8 E 114 VAL VAL MET PHE ILE LYS ALA SER ARG GLU SER HIS SER SEQRES 9 E 114 ARG GLU LEU ALA LEU VAL ILE ARG ARG ARG SEQRES 1 F 114 GLY ALA MET GLY SER SER THR GLU ASP ALA SER GLN TYR SEQRES 2 F 114 TYR CYS ASP LYS ASN ASP ASN GLY ASP SER TYR LEU VAL SEQRES 3 F 114 LEU ILE ARG ILE THR PRO ASP GLU ASP GLY LYS PHE GLY SEQRES 4 F 114 PHE ASN LEU LYS GLY GLY VAL ASP GLN LYS MET PRO LEU SEQRES 5 F 114 VAL VAL SER ARG ILE ASN PRO GLU SER PRO ALA ASP THR SEQRES 6 F 114 CYS ILE PRO LYS LEU ASN GLU GLY ASP GLN ILE VAL LEU SEQRES 7 F 114 ILE ASN GLY ARG ASP ILE SER GLU HIS THR HIS ASP GLN SEQRES 8 F 114 VAL VAL MET PHE ILE LYS ALA SER ARG GLU SER HIS SER SEQRES 9 F 114 ARG GLU LEU ALA LEU VAL ILE ARG ARG ARG SEQRES 1 G 11 ARG SER SER ARG THR ARG ARG GLU THR GLN LEU SEQRES 1 H 11 ARG SER SER ARG THR ARG ARG GLU THR GLN LEU SEQRES 1 I 11 ARG SER SER ARG THR ARG ARG GLU THR GLN LEU SEQRES 1 J 11 ARG SER SER ARG THR ARG ARG GLU THR GLN LEU SEQRES 1 K 11 ARG SER SER ARG THR ARG ARG GLU THR GLN LEU SEQRES 1 L 11 ARG SER SER ARG THR ARG ARG GLU THR GLN LEU HET IOD A 601 2 HET IOD B 601 2 HET IOD C 601 1 HET IOD E 601 1 HET IOD F 601 1 HET IOD F 602 2 HETNAM IOD IODIDE ION FORMUL 13 IOD 6(I 1-) FORMUL 19 HOH *233(H2 O) HELIX 1 AA1 SER A 544 CYS A 549 1 6 HELIX 2 AA2 THR A 571 SER A 582 1 12 HELIX 3 AA3 SER B 544 CYS B 549 1 6 HELIX 4 AA4 THR B 571 SER B 582 1 12 HELIX 5 AA5 ARG B 583 SER B 585 5 3 HELIX 6 AA6 SER C 544 CYS C 549 1 6 HELIX 7 AA7 THR C 571 SER C 582 1 12 HELIX 8 AA8 ARG C 583 SER C 585 5 3 HELIX 9 AA9 SER D 544 CYS D 549 1 6 HELIX 10 AB1 THR D 571 SER D 582 1 12 HELIX 11 AB2 ARG D 583 SER D 585 5 3 HELIX 12 AB3 VAL E 529 LYS E 532 5 4 HELIX 13 AB4 SER E 544 CYS E 549 1 6 HELIX 14 AB5 THR E 571 SER E 582 1 12 HELIX 15 AB6 ARG E 583 SER E 585 5 3 HELIX 16 AB7 SER F 544 CYS F 549 1 6 HELIX 17 AB8 THR F 571 SER F 582 1 12 HELIX 18 AB9 ARG F 583 SER F 585 5 3 SHEET 1 AA1 4 TYR A 507 ILE A 513 0 SHEET 2 AA1 4 LEU A 590 ARG A 596 -1 O LEU A 590 N ILE A 513 SHEET 3 AA1 4 GLN A 558 ILE A 562 -1 N VAL A 560 O VAL A 593 SHEET 4 AA1 4 ARG A 565 ASP A 566 -1 O ARG A 565 N ILE A 562 SHEET 1 AA2 3 MET A 533 ILE A 540 0 SHEET 2 AA2 3 PHE A 523 GLY A 528 -1 N ASN A 524 O SER A 538 SHEET 3 AA2 3 GLU G 4 LEU G 7 -1 O THR G 5 N LEU A 525 SHEET 1 AA3 4 TYR B 507 ILE B 513 0 SHEET 2 AA3 4 LEU B 590 ARG B 596 -1 O LEU B 592 N ILE B 511 SHEET 3 AA3 4 GLN B 558 ILE B 562 -1 N VAL B 560 O VAL B 593 SHEET 4 AA3 4 ARG B 565 ASP B 566 -1 O ARG B 565 N ILE B 562 SHEET 1 AA4 3 MET B 533 ILE B 540 0 SHEET 2 AA4 3 PHE B 523 GLY B 528 -1 N LYS B 526 O VAL B 536 SHEET 3 AA4 3 GLU H 4 LEU H 7 -1 O THR H 5 N LEU B 525 SHEET 1 AA5 4 TYR C 507 ILE C 513 0 SHEET 2 AA5 4 LEU C 590 ARG C 596 -1 O LEU C 592 N ILE C 511 SHEET 3 AA5 4 GLN C 558 ILE C 562 -1 N VAL C 560 O VAL C 593 SHEET 4 AA5 4 ARG C 565 ASP C 566 -1 O ARG C 565 N ILE C 562 SHEET 1 AA6 3 MET C 533 ILE C 540 0 SHEET 2 AA6 3 PHE C 523 GLY C 528 -1 N GLY C 528 O MET C 533 SHEET 3 AA6 3 GLU I 4 GLN I 6 -1 O THR I 5 N LEU C 525 SHEET 1 AA7 4 TYR D 507 ILE D 513 0 SHEET 2 AA7 4 LEU D 590 ARG D 596 -1 O LEU D 592 N ILE D 511 SHEET 3 AA7 4 GLN D 558 ILE D 562 -1 N GLN D 558 O ARG D 595 SHEET 4 AA7 4 ARG D 565 ASP D 566 -1 O ARG D 565 N ILE D 562 SHEET 1 AA8 3 MET D 533 ILE D 540 0 SHEET 2 AA8 3 PHE D 523 GLY D 528 -1 N GLY D 528 O MET D 533 SHEET 3 AA8 3 GLU J 4 GLN J 6 -1 O THR J 5 N LEU D 525 SHEET 1 AA9 4 TYR E 507 ILE E 513 0 SHEET 2 AA9 4 LEU E 590 ARG E 596 -1 O LEU E 592 N ILE E 511 SHEET 3 AA9 4 GLN E 558 ILE E 562 -1 N VAL E 560 O VAL E 593 SHEET 4 AA9 4 ARG E 565 ASP E 566 -1 O ARG E 565 N ILE E 562 SHEET 1 AB1 3 MET E 533 ILE E 540 0 SHEET 2 AB1 3 PHE E 523 GLY E 528 -1 N LYS E 526 O VAL E 536 SHEET 3 AB1 3 GLU K 4 GLN K 6 -1 O THR K 5 N LEU E 525 SHEET 1 AB2 4 TYR F 507 ILE F 513 0 SHEET 2 AB2 4 LEU F 590 ARG F 596 -1 O LEU F 590 N ILE F 513 SHEET 3 AB2 4 GLN F 558 ILE F 562 -1 N VAL F 560 O VAL F 593 SHEET 4 AB2 4 ARG F 565 ASP F 566 -1 O ARG F 565 N ILE F 562 SHEET 1 AB3 3 MET F 533 ILE F 540 0 SHEET 2 AB3 3 PHE F 523 GLY F 528 -1 N GLY F 528 O MET F 533 SHEET 3 AB3 3 GLU L 4 GLN L 6 -1 O THR L 5 N LEU F 525 CISPEP 1 ILE A 550 PRO A 551 0 -0.26 CISPEP 2 ILE B 550 PRO B 551 0 0.35 CISPEP 3 ILE C 550 PRO C 551 0 -2.41 CISPEP 4 ILE D 550 PRO D 551 0 -1.20 CISPEP 5 ILE E 550 PRO E 551 0 -3.78 CISPEP 6 ILE F 550 PRO F 551 0 -1.20 SITE 1 AC1 3 HOH A 736 GLY C 564 HOH C 702 SITE 1 AC2 4 PRO B 551 LYS B 552 ARG B 596 GLY D 564 SITE 1 AC3 2 LYS E 552 HOH E 710 SITE 1 AC4 1 LYS F 552 SITE 1 AC5 1 HOH F 738 CRYST1 46.620 77.430 130.030 90.00 90.14 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021450 0.000000 0.000052 0.00000 SCALE2 0.000000 0.012915 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007691 0.00000