HEADER CELL INVASION 17-APR-18 5ZQ4 TITLE PDE-UBI-ADPR COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIDE; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: UBIQUITIN; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: UBC; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UBIQUITINATION, CELL INVASION EXPDTA X-RAY DIFFRACTION AUTHOR Y.WANG,A.GAO,P.GAO REVDAT 3 22-NOV-23 5ZQ4 1 REMARK REVDAT 2 30-MAY-18 5ZQ4 1 JRNL REVDAT 1 23-MAY-18 5ZQ4 0 JRNL AUTH Y.WANG,M.SHI,H.FENG,Y.ZHU,S.LIU,A.GAO,P.GAO JRNL TITL STRUCTURAL INSIGHTS INTO NON-CANONICAL UBIQUITINATION JRNL TITL 2 CATALYZED BY SIDE. JRNL REF CELL V. 173 1231 2018 JRNL REFN ISSN 1097-4172 JRNL PMID 29731171 JRNL DOI 10.1016/J.CELL.2018.04.023 REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 47640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2377 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.4393 - 5.6970 0.98 2779 139 0.1533 0.1848 REMARK 3 2 5.6970 - 4.5229 0.99 2719 145 0.1590 0.2066 REMARK 3 3 4.5229 - 3.9515 1.00 2711 133 0.1506 0.1929 REMARK 3 4 3.9515 - 3.5903 0.99 2712 140 0.1765 0.2356 REMARK 3 5 3.5903 - 3.3331 1.00 2686 139 0.1890 0.2320 REMARK 3 6 3.3331 - 3.1366 1.00 2713 134 0.1966 0.2138 REMARK 3 7 3.1366 - 2.9795 0.99 2657 139 0.2161 0.2406 REMARK 3 8 2.9795 - 2.8498 1.00 2722 133 0.2188 0.2955 REMARK 3 9 2.8498 - 2.7401 0.99 2657 127 0.2152 0.2524 REMARK 3 10 2.7401 - 2.6456 1.00 2667 141 0.2009 0.2587 REMARK 3 11 2.6456 - 2.5629 1.00 2691 152 0.2073 0.2514 REMARK 3 12 2.5629 - 2.4896 0.99 2657 162 0.2087 0.2514 REMARK 3 13 2.4896 - 2.4241 1.00 2666 136 0.2151 0.2814 REMARK 3 14 2.4241 - 2.3649 1.00 2647 143 0.2165 0.2957 REMARK 3 15 2.3649 - 2.3112 1.00 2615 167 0.2230 0.2973 REMARK 3 16 2.3112 - 2.2620 0.98 2669 138 0.2392 0.3057 REMARK 3 17 2.2620 - 2.2168 0.87 2295 109 0.2593 0.3228 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7021 REMARK 3 ANGLE : 1.112 9484 REMARK 3 CHIRALITY : 0.040 1013 REMARK 3 PLANARITY : 0.006 1238 REMARK 3 DIHEDRAL : 16.397 2648 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 222 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3059 3.3448 -9.8774 REMARK 3 T TENSOR REMARK 3 T11: 0.5828 T22: 0.2791 REMARK 3 T33: 0.4291 T12: -0.0185 REMARK 3 T13: -0.0397 T23: -0.0523 REMARK 3 L TENSOR REMARK 3 L11: 4.2618 L22: 4.4859 REMARK 3 L33: 4.0261 L12: 2.0743 REMARK 3 L13: -0.0138 L23: -0.0871 REMARK 3 S TENSOR REMARK 3 S11: -0.4917 S12: 0.2704 S13: 0.4966 REMARK 3 S21: -0.5185 S22: 0.4741 S23: -0.1239 REMARK 3 S31: -0.6388 S32: 0.2443 S33: -0.0048 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 276 THROUGH 393 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2650 -3.2841 2.7631 REMARK 3 T TENSOR REMARK 3 T11: 0.4046 T22: 0.4045 REMARK 3 T33: 0.3476 T12: -0.0045 REMARK 3 T13: -0.0703 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 2.5000 L22: 3.6217 REMARK 3 L33: 2.6271 L12: -0.4644 REMARK 3 L13: -0.3047 L23: -0.3591 REMARK 3 S TENSOR REMARK 3 S11: -0.1320 S12: -0.5190 S13: 0.1500 REMARK 3 S21: 0.4811 S22: 0.0071 S23: -0.2285 REMARK 3 S31: -0.2607 S32: 0.0809 S33: 0.1280 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 394 THROUGH 513 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2939 -17.7045 -8.7681 REMARK 3 T TENSOR REMARK 3 T11: 0.4105 T22: 0.5527 REMARK 3 T33: 0.5367 T12: 0.1099 REMARK 3 T13: 0.0213 T23: 0.1574 REMARK 3 L TENSOR REMARK 3 L11: 2.9320 L22: 1.7054 REMARK 3 L33: 2.3761 L12: 0.1447 REMARK 3 L13: -0.3969 L23: -0.4179 REMARK 3 S TENSOR REMARK 3 S11: -0.0854 S12: -0.2973 S13: -0.4183 REMARK 3 S21: 0.0795 S22: -0.2451 S23: -0.5961 REMARK 3 S31: 0.4190 S32: 0.9098 S33: 0.1884 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 514 THROUGH 576 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4795 -12.9771 -19.0225 REMARK 3 T TENSOR REMARK 3 T11: 0.4863 T22: 0.3499 REMARK 3 T33: 0.4477 T12: -0.0718 REMARK 3 T13: 0.0207 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 4.6678 L22: 0.9776 REMARK 3 L33: 3.5873 L12: -2.0740 REMARK 3 L13: 1.2148 L23: -0.9204 REMARK 3 S TENSOR REMARK 3 S11: -0.0322 S12: 0.2341 S13: -0.3892 REMARK 3 S21: -0.0500 S22: -0.0512 S23: 0.0644 REMARK 3 S31: 0.3789 S32: 0.2061 S33: 0.1183 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.1399 -12.9847 -28.5063 REMARK 3 T TENSOR REMARK 3 T11: 0.4882 T22: 0.8609 REMARK 3 T33: 0.5267 T12: 0.0521 REMARK 3 T13: 0.0429 T23: 0.0920 REMARK 3 L TENSOR REMARK 3 L11: 6.9037 L22: 3.4321 REMARK 3 L33: 5.2597 L12: 0.8761 REMARK 3 L13: -2.3062 L23: 0.2596 REMARK 3 S TENSOR REMARK 3 S11: -0.1713 S12: 1.1338 S13: 0.1538 REMARK 3 S21: -0.2633 S22: 0.1940 S23: -0.5199 REMARK 3 S31: 0.2540 S32: 0.7121 S33: 0.1196 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 23 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.7657 -4.3399 -31.1073 REMARK 3 T TENSOR REMARK 3 T11: 0.4365 T22: 0.7782 REMARK 3 T33: 0.5382 T12: -0.0263 REMARK 3 T13: 0.0569 T23: 0.2433 REMARK 3 L TENSOR REMARK 3 L11: 9.3135 L22: 8.0229 REMARK 3 L33: 9.0766 L12: 1.1559 REMARK 3 L13: 3.1508 L23: 0.2647 REMARK 3 S TENSOR REMARK 3 S11: 0.3377 S12: 1.6171 S13: 0.9530 REMARK 3 S21: -0.6792 S22: 0.1387 S23: 0.2064 REMARK 3 S31: -0.2650 S32: 0.1644 S33: -0.3782 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 45 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.3344 -5.9486 -22.3592 REMARK 3 T TENSOR REMARK 3 T11: 0.5302 T22: 1.0631 REMARK 3 T33: 0.6009 T12: -0.0343 REMARK 3 T13: -0.0279 T23: 0.1837 REMARK 3 L TENSOR REMARK 3 L11: 5.6636 L22: 6.3236 REMARK 3 L33: 6.0844 L12: 1.4981 REMARK 3 L13: -2.2137 L23: 2.7192 REMARK 3 S TENSOR REMARK 3 S11: -0.0195 S12: -0.1230 S13: 0.7187 REMARK 3 S21: 0.6131 S22: -0.1218 S23: -0.6152 REMARK 3 S31: -0.1716 S32: 1.5786 S33: 0.0926 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 222 THROUGH 393 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2146 -5.3178 -45.6725 REMARK 3 T TENSOR REMARK 3 T11: 0.4700 T22: 0.5483 REMARK 3 T33: 0.3427 T12: 0.0078 REMARK 3 T13: -0.0110 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 2.4439 L22: 4.3357 REMARK 3 L33: 3.4271 L12: 0.1218 REMARK 3 L13: 0.0248 L23: 1.0016 REMARK 3 S TENSOR REMARK 3 S11: -0.1086 S12: 0.5378 S13: 0.0619 REMARK 3 S21: -0.3148 S22: -0.0378 S23: 0.3248 REMARK 3 S31: -0.3221 S32: -0.2325 S33: 0.1557 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 394 THROUGH 576 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3105 -15.0778 -31.5470 REMARK 3 T TENSOR REMARK 3 T11: 0.4993 T22: 0.7246 REMARK 3 T33: 0.5636 T12: -0.2202 REMARK 3 T13: 0.1118 T23: -0.2454 REMARK 3 L TENSOR REMARK 3 L11: 1.9199 L22: 1.6338 REMARK 3 L33: 3.7523 L12: -0.5583 REMARK 3 L13: -0.4420 L23: 1.0920 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: 0.2953 S13: -0.3853 REMARK 3 S21: 0.2924 S22: -0.4996 S23: 0.5143 REMARK 3 S31: 0.7180 S32: -1.2186 S33: 0.2757 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.1091 -5.7444 -18.7244 REMARK 3 T TENSOR REMARK 3 T11: 0.5464 T22: 1.2069 REMARK 3 T33: 0.6363 T12: -0.1747 REMARK 3 T13: 0.0019 T23: -0.4107 REMARK 3 L TENSOR REMARK 3 L11: 9.8165 L22: 4.6931 REMARK 3 L33: 3.5658 L12: -1.9856 REMARK 3 L13: -1.1982 L23: -0.9496 REMARK 3 S TENSOR REMARK 3 S11: -0.7269 S12: -0.3683 S13: 0.0064 REMARK 3 S21: 0.1622 S22: 0.1673 S23: 0.5590 REMARK 3 S31: 0.1342 S32: -1.3017 S33: 0.5173 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 23 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0928 3.2035 -18.9814 REMARK 3 T TENSOR REMARK 3 T11: 0.4866 T22: 0.8729 REMARK 3 T33: 0.6330 T12: 0.0388 REMARK 3 T13: 0.0192 T23: -0.2604 REMARK 3 L TENSOR REMARK 3 L11: 8.0779 L22: 6.2263 REMARK 3 L33: 8.0598 L12: 1.8700 REMARK 3 L13: 1.8778 L23: 1.8547 REMARK 3 S TENSOR REMARK 3 S11: 0.0842 S12: 0.6585 S13: 0.1047 REMARK 3 S21: -0.0134 S22: -0.5466 S23: 0.8329 REMARK 3 S31: -0.8169 S32: -0.9085 S33: 0.2536 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 45 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.2191 -0.8834 -26.7746 REMARK 3 T TENSOR REMARK 3 T11: 0.6781 T22: 1.1004 REMARK 3 T33: 0.6782 T12: -0.0671 REMARK 3 T13: -0.0277 T23: -0.2718 REMARK 3 L TENSOR REMARK 3 L11: 5.6295 L22: 0.3170 REMARK 3 L33: 0.2988 L12: 0.0187 REMARK 3 L13: 0.6130 L23: 0.3617 REMARK 3 S TENSOR REMARK 3 S11: 0.0144 S12: 0.7766 S13: 0.2866 REMARK 3 S21: -0.3430 S22: -0.3506 S23: 0.7458 REMARK 3 S31: -0.1098 S32: -0.9503 S33: 0.4140 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZQ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-APR-18. REMARK 100 THE DEPOSITION ID IS D_1300007394. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47640 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5ZQ5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 10000, BICINE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.69200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 221 REMARK 465 ASP B 486 REMARK 465 ASP B 487 REMARK 465 GLU B 488 REMARK 465 ASP B 489 REMARK 465 GLU B 490 REMARK 465 GLU B 491 REMARK 465 GLU B 492 REMARK 465 LYS B 577 REMARK 465 ILE B 578 REMARK 465 THR B 579 REMARK 465 PRO B 580 REMARK 465 ILE B 581 REMARK 465 LYS B 582 REMARK 465 ARG B 583 REMARK 465 ALA B 584 REMARK 465 PHE B 585 REMARK 465 GLN B 586 REMARK 465 SER B 587 REMARK 465 SER B 588 REMARK 465 SER B 589 REMARK 465 LEU B 590 REMARK 465 GLU B 591 REMARK 465 HIS B 592 REMARK 465 HIS B 593 REMARK 465 HIS B 594 REMARK 465 HIS B 595 REMARK 465 HIS B 596 REMARK 465 HIS B 597 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 ARG C 74 REMARK 465 GLY C 75 REMARK 465 GLY C 76 REMARK 465 MET A 221 REMARK 465 ASP A 486 REMARK 465 ASP A 487 REMARK 465 GLU A 488 REMARK 465 ASP A 489 REMARK 465 GLU A 490 REMARK 465 GLU A 491 REMARK 465 GLU A 492 REMARK 465 LYS A 577 REMARK 465 ILE A 578 REMARK 465 THR A 579 REMARK 465 PRO A 580 REMARK 465 ILE A 581 REMARK 465 LYS A 582 REMARK 465 ARG A 583 REMARK 465 ALA A 584 REMARK 465 PHE A 585 REMARK 465 GLN A 586 REMARK 465 SER A 587 REMARK 465 SER A 588 REMARK 465 SER A 589 REMARK 465 LEU A 590 REMARK 465 GLU A 591 REMARK 465 HIS A 592 REMARK 465 HIS A 593 REMARK 465 HIS A 594 REMARK 465 HIS A 595 REMARK 465 HIS A 596 REMARK 465 HIS A 597 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 GLY D 75 REMARK 465 GLY D 76 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 248 -53.64 -140.87 REMARK 500 ASP B 336 -167.52 -175.26 REMARK 500 SER B 340 -51.37 74.46 REMARK 500 ASN B 508 4.88 85.25 REMARK 500 PRO B 528 46.41 -83.59 REMARK 500 TYR A 248 -65.90 -142.33 REMARK 500 ASP A 336 -157.51 -155.90 REMARK 500 SER A 340 -30.96 -138.49 REMARK 500 GLU A 507 -129.14 53.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 601 DBREF 5ZQ4 B 222 589 UNP Q6RCR1 Q6RCR1_LEGPN 222 589 DBREF 5ZQ4 C 1 76 UNP P0CG48 UBC_HUMAN 1 76 DBREF 5ZQ4 A 222 589 UNP Q6RCR1 Q6RCR1_LEGPN 222 589 DBREF 5ZQ4 D 1 76 UNP P0CG48 UBC_HUMAN 1 76 SEQADV 5ZQ4 MET B 221 UNP Q6RCR1 INITIATING METHIONINE SEQADV 5ZQ4 LEU B 590 UNP Q6RCR1 EXPRESSION TAG SEQADV 5ZQ4 GLU B 591 UNP Q6RCR1 EXPRESSION TAG SEQADV 5ZQ4 HIS B 592 UNP Q6RCR1 EXPRESSION TAG SEQADV 5ZQ4 HIS B 593 UNP Q6RCR1 EXPRESSION TAG SEQADV 5ZQ4 HIS B 594 UNP Q6RCR1 EXPRESSION TAG SEQADV 5ZQ4 HIS B 595 UNP Q6RCR1 EXPRESSION TAG SEQADV 5ZQ4 HIS B 596 UNP Q6RCR1 EXPRESSION TAG SEQADV 5ZQ4 HIS B 597 UNP Q6RCR1 EXPRESSION TAG SEQADV 5ZQ4 GLY C -1 UNP P0CG48 EXPRESSION TAG SEQADV 5ZQ4 SER C 0 UNP P0CG48 EXPRESSION TAG SEQADV 5ZQ4 MET A 221 UNP Q6RCR1 INITIATING METHIONINE SEQADV 5ZQ4 LEU A 590 UNP Q6RCR1 EXPRESSION TAG SEQADV 5ZQ4 GLU A 591 UNP Q6RCR1 EXPRESSION TAG SEQADV 5ZQ4 HIS A 592 UNP Q6RCR1 EXPRESSION TAG SEQADV 5ZQ4 HIS A 593 UNP Q6RCR1 EXPRESSION TAG SEQADV 5ZQ4 HIS A 594 UNP Q6RCR1 EXPRESSION TAG SEQADV 5ZQ4 HIS A 595 UNP Q6RCR1 EXPRESSION TAG SEQADV 5ZQ4 HIS A 596 UNP Q6RCR1 EXPRESSION TAG SEQADV 5ZQ4 HIS A 597 UNP Q6RCR1 EXPRESSION TAG SEQADV 5ZQ4 GLY D -1 UNP P0CG48 EXPRESSION TAG SEQADV 5ZQ4 SER D 0 UNP P0CG48 EXPRESSION TAG SEQRES 1 B 377 MET SER VAL PRO THR TRP ASN GLY PHE SER LEU TYR THR SEQRES 2 B 377 ASP GLU THR VAL ARG ASN ALA ALA ARG TYR ALA TYR ASP SEQRES 3 B 377 ASN TYR LEU GLY LYS PRO TYR THR GLY THR VAL GLU ALA SEQRES 4 B 377 THR PRO VAL ASN PHE GLY GLY GLN MET VAL TYR ARG GLN SEQRES 5 B 377 HIS HIS GLY LEU ALA HIS THR LEU ARG THR MET ALA TYR SEQRES 6 B 377 ALA GLU ILE ILE VAL GLU GLU ALA ARG LYS ALA LYS LEU SEQRES 7 B 377 ARG GLY GLU SER LEU LYS THR PHE ALA ASP GLY ARG THR SEQRES 8 B 377 LEU ALA ASP VAL THR PRO GLU GLU LEU ARG LYS ILE MET SEQRES 9 B 377 ILE ALA GLN ALA PHE PHE VAL THR GLY ARG ASP ASP GLU SEQRES 10 B 377 GLU SER SER LYS ASN TYR GLU LYS TYR HIS GLU GLN SER SEQRES 11 B 377 ARG ASP ALA PHE LEU LYS TYR VAL GLU GLU ASN LYS SER SEQRES 12 B 377 THR LEU ILE PRO ASP VAL PHE LYS ASP GLU LYS ASP VAL SEQRES 13 B 377 LYS PHE TYR ALA ASP VAL ILE GLU ASP LYS ASP HIS LYS SEQRES 14 B 377 TRP ALA ASP SER PRO ALA HIS VAL LEU VAL ASN GLN GLY SEQRES 15 B 377 HIS MET VAL ASP LEU VAL ARG VAL LYS GLN PRO PRO GLU SEQRES 16 B 377 SER TYR LEU GLU TYR TYR PHE SER GLN LEU GLN PRO TRP SEQRES 17 B 377 ILE GLY SER THR ALA THR GLU ALA VAL PHE ALA THR GLN SEQRES 18 B 377 ARG GLN PHE PHE HIS ALA THR TYR GLU ALA VAL ALA GLY SEQRES 19 B 377 PHE ASP SER GLU ASN LYS GLU PRO HIS LEU VAL VAL ASP SEQRES 20 B 377 GLY LEU GLY ARG TYR VAL ILE GLY GLN ASP GLY ASN PRO SEQRES 21 B 377 ILE ARG GLU GLU SER ASP ASP GLU ASP GLU GLU GLU SER SEQRES 22 B 377 GLY GLU LEU LYS PHE PHE SER GLN LYS LYS LYS LEU GLU SEQRES 23 B 377 GLU ASN GLN ARG TYR MET ARG VAL ASP GLU TYR LEU LYS SEQRES 24 B 377 LEU ASP GLU VAL GLN LYS ARG PHE PRO GLY ALA GLY LYS SEQRES 25 B 377 LYS LEU ASP GLY GLY LEU PRO GLY LEU LYS GLU TYR GLN SEQRES 26 B 377 TYR LEU GLN ARG LEU ASN SER ILE ASN ARG ALA ARG CYS SEQRES 27 B 377 GLU ASN ASP VAL ASP PHE CYS LEU GLY GLN LEU GLN THR SEQRES 28 B 377 ALA HIS HIS GLN THR LYS ILE THR PRO ILE LYS ARG ALA SEQRES 29 B 377 PHE GLN SER SER SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 78 GLY SER MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS SEQRES 2 C 78 THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 C 78 ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO SEQRES 4 C 78 PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU SEQRES 5 C 78 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 6 C 78 GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 A 377 MET SER VAL PRO THR TRP ASN GLY PHE SER LEU TYR THR SEQRES 2 A 377 ASP GLU THR VAL ARG ASN ALA ALA ARG TYR ALA TYR ASP SEQRES 3 A 377 ASN TYR LEU GLY LYS PRO TYR THR GLY THR VAL GLU ALA SEQRES 4 A 377 THR PRO VAL ASN PHE GLY GLY GLN MET VAL TYR ARG GLN SEQRES 5 A 377 HIS HIS GLY LEU ALA HIS THR LEU ARG THR MET ALA TYR SEQRES 6 A 377 ALA GLU ILE ILE VAL GLU GLU ALA ARG LYS ALA LYS LEU SEQRES 7 A 377 ARG GLY GLU SER LEU LYS THR PHE ALA ASP GLY ARG THR SEQRES 8 A 377 LEU ALA ASP VAL THR PRO GLU GLU LEU ARG LYS ILE MET SEQRES 9 A 377 ILE ALA GLN ALA PHE PHE VAL THR GLY ARG ASP ASP GLU SEQRES 10 A 377 GLU SER SER LYS ASN TYR GLU LYS TYR HIS GLU GLN SER SEQRES 11 A 377 ARG ASP ALA PHE LEU LYS TYR VAL GLU GLU ASN LYS SER SEQRES 12 A 377 THR LEU ILE PRO ASP VAL PHE LYS ASP GLU LYS ASP VAL SEQRES 13 A 377 LYS PHE TYR ALA ASP VAL ILE GLU ASP LYS ASP HIS LYS SEQRES 14 A 377 TRP ALA ASP SER PRO ALA HIS VAL LEU VAL ASN GLN GLY SEQRES 15 A 377 HIS MET VAL ASP LEU VAL ARG VAL LYS GLN PRO PRO GLU SEQRES 16 A 377 SER TYR LEU GLU TYR TYR PHE SER GLN LEU GLN PRO TRP SEQRES 17 A 377 ILE GLY SER THR ALA THR GLU ALA VAL PHE ALA THR GLN SEQRES 18 A 377 ARG GLN PHE PHE HIS ALA THR TYR GLU ALA VAL ALA GLY SEQRES 19 A 377 PHE ASP SER GLU ASN LYS GLU PRO HIS LEU VAL VAL ASP SEQRES 20 A 377 GLY LEU GLY ARG TYR VAL ILE GLY GLN ASP GLY ASN PRO SEQRES 21 A 377 ILE ARG GLU GLU SER ASP ASP GLU ASP GLU GLU GLU SER SEQRES 22 A 377 GLY GLU LEU LYS PHE PHE SER GLN LYS LYS LYS LEU GLU SEQRES 23 A 377 GLU ASN GLN ARG TYR MET ARG VAL ASP GLU TYR LEU LYS SEQRES 24 A 377 LEU ASP GLU VAL GLN LYS ARG PHE PRO GLY ALA GLY LYS SEQRES 25 A 377 LYS LEU ASP GLY GLY LEU PRO GLY LEU LYS GLU TYR GLN SEQRES 26 A 377 TYR LEU GLN ARG LEU ASN SER ILE ASN ARG ALA ARG CYS SEQRES 27 A 377 GLU ASN ASP VAL ASP PHE CYS LEU GLY GLN LEU GLN THR SEQRES 28 A 377 ALA HIS HIS GLN THR LYS ILE THR PRO ILE LYS ARG ALA SEQRES 29 A 377 PHE GLN SER SER SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 78 GLY SER MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS SEQRES 2 D 78 THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 D 78 ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO SEQRES 4 D 78 PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU SEQRES 5 D 78 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 6 D 78 GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HET AMP B 601 23 HET AMP A 601 23 HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 5 AMP 2(C10 H14 N5 O7 P) FORMUL 7 HOH *118(H2 O) HELIX 1 AA1 ASP B 234 TYR B 248 1 15 HELIX 2 AA2 GLY B 275 ARG B 299 1 25 HELIX 3 AA3 THR B 311 VAL B 315 5 5 HELIX 4 AA4 THR B 316 PHE B 330 1 15 HELIX 5 AA5 ASN B 342 ASN B 361 1 20 HELIX 6 AA6 ASN B 361 ILE B 366 1 6 HELIX 7 AA7 ASP B 372 ASP B 385 1 14 HELIX 8 AA8 SER B 393 ASP B 406 1 14 HELIX 9 AA9 LEU B 407 VAL B 410 5 4 HELIX 10 AB1 PRO B 413 GLY B 430 1 18 HELIX 11 AB2 GLY B 430 THR B 448 1 19 HELIX 12 AB3 ARG B 513 LEU B 520 1 8 HELIX 13 AB4 LEU B 520 PHE B 527 1 8 HELIX 14 AB5 LYS B 542 ASN B 551 1 10 HELIX 15 AB6 SER B 552 ASP B 561 1 10 HELIX 16 AB7 ASP B 561 THR B 576 1 16 HELIX 17 AB8 THR C 22 GLY C 35 1 14 HELIX 18 AB9 PRO C 37 ASP C 39 5 3 HELIX 19 AC1 LEU C 56 ASN C 60 5 5 HELIX 20 AC2 ASP A 234 TYR A 248 1 15 HELIX 21 AC3 GLY A 275 ARG A 299 1 25 HELIX 22 AC4 THR A 311 VAL A 315 5 5 HELIX 23 AC5 THR A 316 PHE A 329 1 14 HELIX 24 AC6 ASN A 342 ASN A 361 1 20 HELIX 25 AC7 ASN A 361 ILE A 366 1 6 HELIX 26 AC8 ASP A 372 ASP A 385 1 14 HELIX 27 AC9 SER A 393 ASP A 406 1 14 HELIX 28 AD1 LEU A 407 VAL A 410 5 4 HELIX 29 AD2 PRO A 413 GLY A 430 1 18 HELIX 30 AD3 GLY A 430 THR A 448 1 19 HELIX 31 AD4 ARG A 513 LYS A 519 1 7 HELIX 32 AD5 LEU A 520 PHE A 527 1 8 HELIX 33 AD6 LYS A 542 ASN A 551 1 10 HELIX 34 AD7 SER A 552 ASP A 561 1 10 HELIX 35 AD8 ASP A 561 THR A 576 1 16 HELIX 36 AD9 THR D 22 GLY D 35 1 14 HELIX 37 AE1 PRO D 37 ASP D 39 5 3 HELIX 38 AE2 LEU D 56 ASN D 60 5 5 SHEET 1 AA1 2 VAL B 262 PHE B 264 0 SHEET 2 AA1 2 GLN B 267 VAL B 269 -1 O GLN B 267 N PHE B 264 SHEET 1 AA2 2 PHE B 455 ASP B 456 0 SHEET 2 AA2 2 LYS B 533 LEU B 534 -1 O LEU B 534 N PHE B 455 SHEET 1 AA3 2 VAL B 473 ILE B 474 0 SHEET 2 AA3 2 ARG B 510 TYR B 511 -1 O ARG B 510 N ILE B 474 SHEET 1 AA4 5 THR C 12 GLU C 16 0 SHEET 2 AA4 5 GLN C 2 THR C 7 -1 N VAL C 5 O ILE C 13 SHEET 3 AA4 5 THR C 66 LEU C 71 1 O LEU C 67 N PHE C 4 SHEET 4 AA4 5 GLN C 41 PHE C 45 -1 N ARG C 42 O VAL C 70 SHEET 5 AA4 5 LYS C 48 GLN C 49 -1 O LYS C 48 N PHE C 45 SHEET 1 AA5 2 VAL A 262 PHE A 264 0 SHEET 2 AA5 2 GLN A 267 VAL A 269 -1 O VAL A 269 N VAL A 262 SHEET 1 AA6 2 PHE A 455 ASP A 456 0 SHEET 2 AA6 2 LYS A 533 LEU A 534 -1 O LEU A 534 N PHE A 455 SHEET 1 AA7 2 VAL A 473 ILE A 474 0 SHEET 2 AA7 2 ARG A 510 TYR A 511 -1 O ARG A 510 N ILE A 474 SHEET 1 AA8 5 THR D 12 GLU D 16 0 SHEET 2 AA8 5 GLN D 2 THR D 7 -1 N VAL D 5 O ILE D 13 SHEET 3 AA8 5 THR D 66 LEU D 71 1 O LEU D 67 N PHE D 4 SHEET 4 AA8 5 GLN D 41 PHE D 45 -1 N ARG D 42 O VAL D 70 SHEET 5 AA8 5 LYS D 48 GLN D 49 -1 O LYS D 48 N PHE D 45 CISPEP 1 ILE B 366 PRO B 367 0 7.50 CISPEP 2 GLN B 412 PRO B 413 0 -0.62 CISPEP 3 ILE A 366 PRO A 367 0 2.41 CISPEP 4 GLN A 412 PRO A 413 0 0.11 SITE 1 AC1 11 ARG B 334 TYR B 343 TRP B 390 ASN B 400 SITE 2 AC1 11 GLN B 401 HIS B 403 MET B 404 LEU B 407 SITE 3 AC1 11 TYR B 420 GLN B 424 HOH B 753 SITE 1 AC2 10 TYR A 343 TRP A 390 ASN A 400 HIS A 403 SITE 2 AC2 10 MET A 404 TYR A 420 GLN A 424 HOH A 701 SITE 3 AC2 10 HOH A 715 HOH A 732 CRYST1 95.417 55.384 98.435 90.00 110.22 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010480 0.000000 0.003861 0.00000 SCALE2 0.000000 0.018056 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010826 0.00000